Wall clock time and date at job start Wed Apr 1 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 N 1.46503 * 109.46903 * 239.99749 * 2 1 3 5 5 C 1.36933 * 119.99934 * 85.00037 * 4 2 1 6 6 H 1.08007 * 120.00168 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00140 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47483 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47297 * 120.00121 * 9 7 5 12 12 H 1.48504 * 109.47113 * 240.00116 * 9 7 5 13 13 C 1.52999 * 109.47170 * 119.99950 * 2 1 3 14 14 H 1.08993 * 109.49948 * 60.06061 * 13 2 1 15 15 C 1.53043 * 109.49595 * 299.99946 * 13 2 1 16 16 C 1.53039 * 109.53864 * 178.68567 * 15 13 2 17 17 C 1.53195 * 109.31425 * 61.36256 * 16 15 13 18 18 N 1.46930 * 108.77336 * 305.36819 * 17 16 15 19 19 C 1.34776 * 120.62681 * 233.57876 * 18 17 16 20 20 O 1.21496 * 119.99732 * 184.95565 * 19 18 17 21 21 C 1.48326 * 120.00127 * 4.96176 * 19 18 17 22 22 N 1.31496 * 127.15435 * 354.21278 * 21 19 18 23 23 O 1.21436 * 111.52428 * 180.02562 * 22 21 19 24 24 C 1.33186 * 111.57149 * 359.93468 * 23 22 21 25 25 C 1.35381 * 106.63475 * 0.09954 * 24 23 22 26 26 C 1.50054 * 124.93752 * 179.80580 * 25 24 23 27 27 C 1.53549 * 108.23648 * 343.94717 * 26 25 24 28 28 C 1.53114 * 109.50540 * 49.19271 * 27 26 25 29 29 C 1.50599 * 129.60510 * 180.22368 * 24 23 22 30 30 C 1.46921 * 118.74071 * 53.86234 * 18 17 16 31 31 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46698 * 300.00224 * 1 2 3 33 33 H 1.08994 * 109.47260 * 60.00046 * 1 2 3 34 34 H 0.96989 * 119.99782 * 264.99779 * 4 2 1 35 35 H 0.97002 * 119.99505 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.46555 * 58.66297 * 15 13 2 37 37 H 1.09012 * 109.46102 * 298.70459 * 15 13 2 38 38 H 1.09003 * 109.49616 * 301.41298 * 16 15 13 39 39 H 1.08999 * 109.49697 * 181.31334 * 16 15 13 40 40 H 1.09000 * 109.58861 * 185.57668 * 17 16 15 41 41 H 1.09001 * 109.69964 * 65.22143 * 17 16 15 42 42 H 1.09005 * 109.71100 * 103.63294 * 26 25 24 43 43 H 1.09006 * 109.71288 * 224.25889 * 26 25 24 44 44 H 1.08994 * 109.46796 * 169.19885 * 27 26 25 45 45 H 1.09001 * 109.46472 * 289.18059 * 27 26 25 46 46 H 1.08999 * 109.42924 * 50.21158 * 28 27 26 47 47 H 1.09000 * 109.42676 * 170.11926 * 28 27 26 48 48 H 1.08999 * 109.69248 * 43.49117 * 29 24 23 49 49 H 1.09000 * 109.73010 * 282.92468 * 29 24 23 50 50 H 1.09004 * 109.59152 * 65.92078 * 30 18 17 51 51 H 1.09001 * 109.59008 * 186.35007 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8918 1.0402 -2.4244 7 6 2.6122 -0.6619 -3.5090 8 7 2.9252 -1.9390 -3.4499 9 14 2.7913 0.2701 -5.1180 10 1 2.3762 1.6823 -4.9210 11 1 4.2084 0.2272 -5.5598 12 1 1.9310 -0.3584 -6.1525 13 6 2.0400 -0.7212 1.2492 14 1 1.6779 -1.7492 1.2492 15 6 1.5302 -0.0002 2.4992 16 6 2.0126 -0.7397 3.7492 17 6 3.5443 -0.7368 3.7802 18 7 4.0439 -1.2970 2.5171 19 6 4.9189 -2.3221 2.5191 20 8 5.3936 -2.7175 1.4730 21 6 5.3021 -2.9675 3.7984 22 7 4.9611 -2.5911 5.0113 23 8 5.4342 -3.3251 5.8552 24 6 6.1593 -4.2983 5.3067 25 6 6.1080 -4.1119 3.9668 26 6 6.7918 -4.9799 2.9516 27 6 7.8491 -5.8252 3.6762 28 6 7.2203 -6.4865 4.9057 29 6 6.9147 -5.4215 5.9671 30 6 3.5763 -0.7143 1.2520 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2490 -1.6317 -1.1525 35 1 3.2485 -2.3962 -4.2419 36 1 0.4405 0.0206 2.4875 37 1 1.9126 1.0206 2.5110 38 1 1.6512 -1.7678 3.7258 39 1 1.6298 -0.2391 4.6385 40 1 3.8941 -1.3458 4.6138 41 1 3.9075 0.2844 3.8960 42 1 6.0613 -5.6340 2.4755 43 1 7.2730 -4.3557 2.1985 44 1 8.2237 -6.5949 3.0015 45 1 8.6735 -5.1848 3.9899 46 1 6.2955 -6.9853 4.6159 47 1 7.9140 -7.2193 5.3178 48 1 6.3064 -5.8569 6.7599 49 1 7.8468 -5.0419 6.3857 50 1 3.9400 0.3095 1.1646 51 1 3.9472 -1.3085 0.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:12 Heat of formation + Delta-G solvation = 33.696594 kcal Electronic energy + Delta-G solvation = -31687.205539 eV Core-core repulsion = 27589.819953 eV Total energy + Delta-G solvation = -4097.385586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.25544 -40.02446 -38.09700 -37.60853 -35.46427 -34.10509 -32.86556 -31.72402 -31.24558 -30.64921 -29.70623 -28.21617 -26.00069 -24.80142 -24.37163 -23.30817 -23.08899 -22.64777 -21.04967 -20.13399 -19.55793 -19.04571 -17.98889 -17.36937 -17.09725 -16.70705 -15.69528 -15.32622 -15.06811 -14.82924 -14.63929 -14.30774 -14.14921 -14.08459 -13.72961 -13.57552 -13.40658 -13.39720 -13.00136 -12.88159 -12.70057 -12.62619 -12.32299 -12.08069 -11.65260 -11.34720 -11.27188 -11.26337 -11.00728 -10.98129 -10.84052 -10.77329 -10.67861 -10.40738 -10.30279 -10.22264 -10.12298 -9.98261 -9.69053 -9.51072 -9.30403 -8.86541 -8.44820 -6.88903 -5.68730 -2.97889 0.96127 1.54175 2.59754 2.94958 3.22352 3.47663 3.52804 3.55353 3.80484 4.20168 4.38380 4.46739 4.62576 4.67147 4.70116 4.81525 4.94344 5.02354 5.07127 5.11577 5.14265 5.17356 5.29702 5.39335 5.45051 5.47012 5.61230 5.63374 5.68352 5.73949 5.79536 5.83255 5.87650 5.90048 5.96630 6.02561 6.06672 6.12250 6.19904 6.24706 6.26415 6.45473 6.49510 6.55803 6.73579 6.77529 6.94729 7.13522 7.45815 7.76761 7.84652 8.20555 8.48832 9.60051 10.17761 10.52391 11.53580 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002902 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.178293 B = 9646.715527 C =11415.621524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.075 3.925 18 N -0.594 5.594 19 C 0.589 3.411 20 O -0.510 6.510 21 C -0.001 4.001 22 N -0.337 5.337 23 O 0.112 5.888 24 C -0.036 4.036 25 C -0.151 4.151 26 C -0.049 4.049 27 C -0.123 4.123 28 C -0.119 4.119 29 C -0.034 4.034 30 C 0.123 3.877 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.068 0.932 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -6.345 24.359 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.154 4.154 16 C -0.168 4.168 17 C -0.048 4.048 18 N -0.327 5.327 19 C 0.374 3.626 20 O -0.383 6.383 21 C -0.158 4.158 22 N -0.045 5.045 23 O 0.046 5.954 24 C -0.101 4.101 25 C -0.156 4.156 26 C -0.086 4.086 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.072 4.072 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.086 0.914 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.293 -5.414 24.066 25.457 hybrid contribution 0.274 -0.110 -1.346 1.378 sum 6.567 -5.524 22.720 24.286 Atomic orbital electron populations 1.22475 0.99264 1.00797 0.99895 1.20176 0.91857 0.95265 0.85727 0.93470 1.42459 1.78079 1.10747 1.05297 1.19237 1.36473 0.93798 0.87315 0.91246 1.24736 1.02257 0.95948 0.97977 1.69684 1.50789 1.08596 1.28653 0.86169 0.77279 0.78757 0.84289 1.20654 1.21926 1.22004 1.21842 0.94381 1.00541 0.95449 0.91199 1.21653 1.01020 0.99079 0.93613 1.21873 0.94951 1.01294 0.98655 1.22560 0.94885 1.00193 0.87130 1.48058 1.43185 1.32662 1.08762 1.16996 0.79933 0.79970 0.85749 1.90855 1.53349 1.63198 1.30920 1.23176 1.01544 0.97882 0.93230 1.74214 1.17141 1.14205 0.98960 1.84678 1.47928 1.29819 1.32970 1.24096 0.98819 0.94489 0.92699 1.20680 1.02158 0.97686 0.95027 1.20047 0.97141 0.96284 0.95132 1.21719 0.97997 0.99424 0.96930 1.21666 1.02036 0.96899 0.95093 1.20269 0.98677 0.90040 0.98239 1.21887 0.94038 0.99048 0.84784 0.93628 0.94269 0.92850 0.78218 0.93618 0.91186 0.91860 0.91881 0.90992 0.86063 0.91584 0.89683 0.88890 0.90482 0.91387 0.90935 0.90059 0.88915 0.88755 0.91398 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.14 37.16 0.34 -2.65 16 2 C 0.18 3.58 2.47 -67.93 -0.17 3.41 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -18.31 4.52 -53.42 -0.24 -18.55 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 9 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 C -0.10 -1.74 1.99 -90.27 -0.18 -1.92 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.12 -1.55 4.85 -26.69 -0.13 -1.68 16 16 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 17 C 0.08 1.00 6.33 -3.71 -0.02 0.97 16 18 N -0.59 -9.77 2.97 -173.43 -0.51 -10.28 16 19 C 0.59 10.45 7.72 -12.11 -0.09 10.36 16 20 O -0.51 -10.71 15.48 5.37 0.08 -10.63 16 21 C 0.00 -0.01 6.93 -82.82 -0.57 -0.58 16 22 N -0.34 -4.44 8.56 33.29 0.28 -4.15 16 23 O 0.11 1.25 11.18 19.20 0.21 1.47 16 24 C -0.04 -0.36 7.38 -35.38 -0.26 -0.62 16 25 C -0.15 -1.87 6.04 -104.92 -0.63 -2.50 16 26 C -0.05 -0.54 5.70 -27.91 -0.16 -0.70 16 27 C -0.12 -0.89 5.92 -26.39 -0.16 -1.05 16 28 C -0.12 -0.65 5.88 -26.45 -0.16 -0.80 16 29 C -0.03 -0.19 6.31 -27.71 -0.17 -0.37 16 30 C 0.12 2.26 5.49 -3.49 -0.02 2.24 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.59 6.40 -51.93 -0.33 0.25 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.38 10.54 7.64 -40.82 -0.31 10.23 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 37 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.12 1.59 3.76 -73.56 -0.28 1.31 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.20 7.75 -51.93 -0.40 0.79 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 46 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.11 2.43 6.57 -51.93 -0.34 2.09 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -33.12 395.08 -9.61 -42.73 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.30 Total: 8.53 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.80 Total: -4.87 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.25 Total: -61.06 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.30 Total: -9.16 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.12 -9.61 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.429 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds