Wall clock time and date at job start Wed Apr 1 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47124 * 2 1 4 4 N 1.46505 * 109.47268 * 120.00017 * 2 1 3 5 5 C 1.36940 * 119.99978 * 275.00099 * 4 2 1 6 6 H 1.08000 * 119.99817 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99786 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00017 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00199 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.46593 * 90.00345 * 9 7 5 11 11 H 1.48502 * 109.47332 * 210.00005 * 9 7 5 12 12 H 1.48496 * 109.47156 * 330.00571 * 9 7 5 13 13 C 1.53002 * 109.47472 * 239.99987 * 2 1 3 14 14 H 1.08997 * 110.91193 * 302.44943 * 13 2 1 15 15 C 1.55154 * 111.00007 * 66.34812 * 13 2 1 16 16 C 1.54342 * 103.01996 * 153.38427 * 15 13 2 17 17 N 1.47027 * 107.26156 * 338.13887 * 16 15 13 18 18 C 1.34780 * 125.64600 * 178.84570 * 17 16 15 19 19 O 1.21487 * 119.99703 * 179.69429 * 18 17 16 20 20 C 1.48330 * 119.99767 * 359.69891 * 18 17 16 21 21 N 1.31341 * 127.13641 * 359.68041 * 20 18 17 22 22 O 1.21239 * 111.48465 * 180.21919 * 21 20 18 23 23 C 1.33655 * 111.63715 * 359.72943 * 22 21 20 24 24 C 1.34945 * 106.60363 * 0.48089 * 23 22 21 25 25 C 1.50088 * 126.62095 * 178.90137 * 24 23 22 26 26 C 1.53336 * 108.92148 * 28.01667 * 25 24 23 27 27 C 1.52663 * 109.57100 * 271.48833 * 26 25 24 28 28 C 1.52624 * 110.91189 * 61.43921 * 27 26 25 29 29 C 1.50614 * 127.96424 * 181.17710 * 23 22 21 30 30 C 1.47425 * 108.70510 * 358.58736 * 17 16 15 31 31 H 1.08991 * 109.47284 * 60.00104 * 1 2 3 32 32 H 1.08998 * 109.46661 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46965 * 299.99733 * 1 2 3 34 34 H 0.96993 * 119.99853 * 94.99912 * 4 2 1 35 35 H 0.96998 * 120.00260 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.72133 * 271.93877 * 15 13 2 37 37 H 1.09002 * 110.72133 * 35.21937 * 15 13 2 38 38 H 1.08995 * 109.99221 * 218.66861 * 16 15 13 39 39 H 1.08996 * 109.77744 * 97.49761 * 16 15 13 40 40 H 1.09003 * 109.56719 * 147.84725 * 25 24 23 41 41 H 1.09001 * 109.56451 * 268.18463 * 25 24 23 42 42 H 1.09003 * 109.45086 * 151.46036 * 26 25 24 43 43 H 1.08999 * 109.44007 * 31.51216 * 26 25 24 44 44 H 1.08991 * 109.18963 * 301.06778 * 27 26 25 45 45 H 1.09005 * 109.18780 * 181.80551 * 27 26 25 46 46 H 1.09001 * 109.39579 * 273.51061 * 28 27 26 47 47 H 1.09001 * 109.32341 * 153.73732 * 28 27 26 48 48 H 1.09006 * 109.53989 * 346.12605 * 29 23 22 49 49 H 1.08996 * 109.54120 * 106.29381 * 29 23 22 50 50 H 1.08993 * 110.36558 * 143.19296 * 30 17 16 51 51 H 1.08996 * 110.36773 * 265.51654 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3758 6 1 1.8919 1.0403 2.4244 7 6 2.6114 -0.6620 3.5092 8 7 2.7366 -0.0055 4.6432 9 14 3.0543 -2.4748 3.4257 10 1 4.4870 -2.6179 3.0619 11 1 2.8143 -3.1046 4.7490 12 1 2.2140 -3.1429 2.3997 13 6 2.0401 -0.7212 -1.2492 14 1 1.6547 -1.7398 -1.2950 15 6 1.6776 0.0688 -2.5344 16 6 2.7788 -0.3588 -3.5277 17 7 3.9166 -0.8464 -2.7343 18 6 5.0708 -1.3322 -3.2325 19 8 5.9489 -1.7034 -2.4794 20 6 5.2690 -1.4134 -4.7003 21 7 4.4181 -1.0596 -5.6361 22 8 4.8713 -1.2517 -6.7440 23 6 6.1057 -1.7614 -6.6900 24 6 6.4113 -1.8938 -5.3823 25 6 7.6846 -2.4471 -4.8120 26 6 8.8241 -2.1998 -5.8078 27 6 8.9094 -3.3675 -6.7876 28 6 7.6182 -3.5004 -7.5903 29 6 7.0132 -2.1149 -7.8389 30 6 3.5882 -0.7102 -1.3035 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6317 1.1526 35 1 3.0600 -0.4628 5.4352 36 1 0.6922 -0.2202 -2.8997 37 1 1.7231 1.1426 -2.3527 38 1 3.0870 0.4941 -4.1323 39 1 2.4062 -1.1562 -4.1705 40 1 7.9093 -1.9484 -3.8691 41 1 7.5737 -3.5182 -4.6429 42 1 9.7661 -2.1105 -5.2666 43 1 8.6322 -1.2782 -6.3571 44 1 9.0826 -4.2892 -6.2323 45 1 9.7412 -3.2008 -7.4720 46 1 6.9073 -4.1113 -7.0339 47 1 7.8351 -3.9775 -8.5460 48 1 6.4397 -2.1284 -8.7657 49 1 7.8107 -1.3757 -7.9143 50 1 3.9935 -1.5503 -0.7397 51 1 3.9747 0.2313 -0.9136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569819561.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:22 Heat of formation + Delta-G solvation = 11.755208 kcal Electronic energy + Delta-G solvation = -31214.255384 eV Core-core repulsion = 27115.918348 eV Total energy + Delta-G solvation = -4098.337036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.24440 -41.30120 -39.41004 -38.97482 -37.01743 -35.24853 -34.35009 -32.96796 -32.65066 -32.03886 -30.43566 -29.87985 -27.37711 -26.23041 -25.82053 -25.55812 -23.77167 -22.85107 -22.05712 -21.38037 -20.67060 -20.39479 -19.59194 -18.98287 -18.40255 -17.97679 -17.40240 -16.73773 -16.66329 -16.35906 -15.95786 -15.76879 -15.53478 -15.08341 -14.72602 -14.63953 -14.41610 -14.34557 -14.28303 -14.10528 -13.96082 -13.68423 -13.44232 -13.30446 -13.17572 -12.93838 -12.88035 -12.63764 -12.43575 -12.17582 -12.16695 -11.97786 -11.86991 -11.81712 -11.74514 -11.62877 -11.49783 -11.41795 -11.38909 -11.21012 -11.01535 -10.14671 -9.91321 -9.32731 -8.03329 -5.35041 -0.06278 0.56863 1.33327 1.37322 1.42358 1.52670 1.87935 1.93444 2.45736 2.68883 3.23036 3.29219 3.43226 3.53021 3.60432 3.70892 3.85340 3.89768 3.91625 4.03974 4.11834 4.18522 4.22612 4.31496 4.35350 4.40567 4.42414 4.53550 4.60499 4.71206 4.76919 4.77447 4.79066 4.85465 4.87857 4.92375 4.96893 5.03559 5.04367 5.10027 5.15008 5.22459 5.25447 5.32701 5.33545 5.40750 5.50503 5.58450 5.78073 6.16978 6.21559 6.66375 6.95076 7.07537 7.84648 8.01462 9.18445 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002544 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.804739 B =11002.294407 C =12336.673643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.049 0.951 4 N -0.754 5.754 5 C -0.218 4.218 6 H 0.061 0.939 7 C -0.063 4.063 8 N -0.984 5.984 9 Si 0.944 3.056 10 H -0.288 1.288 11 H -0.295 1.295 12 H -0.252 1.252 13 C -0.094 4.094 14 H 0.088 0.912 15 C -0.110 4.110 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.599 3.401 19 O -0.560 6.560 20 C -0.040 4.040 21 N -0.337 5.337 22 O 0.133 5.867 23 C -0.014 4.014 24 C -0.166 4.166 25 C -0.046 4.046 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.115 4.115 29 C -0.037 4.037 30 C 0.119 3.881 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.362 0.638 35 H 0.256 0.744 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -5.712 -35.447 36.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 H 0.067 0.933 4 N -0.397 5.397 5 C -0.349 4.349 6 H 0.079 0.921 7 C -0.254 4.254 8 N -0.635 5.635 9 Si 0.773 3.227 10 H -0.215 1.215 11 H -0.222 1.222 12 H -0.177 1.177 13 C -0.114 4.114 14 H 0.106 0.894 15 C -0.148 4.148 16 C -0.014 4.014 17 N -0.337 5.337 18 C 0.386 3.614 19 O -0.438 6.438 20 C -0.197 4.197 21 N -0.037 5.037 22 O 0.057 5.943 23 C -0.077 4.077 24 C -0.171 4.171 25 C -0.084 4.084 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.153 4.153 29 C -0.075 4.075 30 C -0.003 4.003 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.194 0.806 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.122 0.878 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.797 -5.228 -34.830 35.870 hybrid contribution 0.931 -1.148 1.662 2.224 sum 7.729 -6.376 -33.168 34.648 Atomic orbital electron populations 1.22252 0.96329 1.01503 1.01309 1.20378 0.93509 0.94882 0.83602 0.93265 1.42862 1.80117 1.09441 1.07250 1.19007 1.34290 0.94419 0.87169 0.92064 1.25381 1.02799 1.01828 0.95429 1.69860 1.55085 1.37451 1.01121 0.85562 0.78230 0.81899 0.77020 1.21480 1.22199 1.17702 1.22563 0.92075 1.01087 0.95716 0.89354 1.22735 0.99030 1.01149 0.91907 1.22285 0.85248 0.99793 0.94108 1.48513 1.15579 1.60715 1.08911 1.16893 0.81357 0.77762 0.85388 1.90772 1.42967 1.50706 1.59327 1.22939 0.94981 1.07314 0.94435 1.74470 1.21270 1.17578 0.90405 1.84737 1.26834 1.58633 1.24118 1.24756 0.86231 0.99131 0.97625 1.20882 0.98115 1.05668 0.92474 1.19997 0.89336 1.00318 0.98763 1.21746 0.97050 1.00070 0.96839 1.21559 0.98374 0.97897 0.97972 1.21610 0.96774 0.94830 1.02077 1.20582 0.95468 0.99195 0.92205 1.22200 0.96836 1.01285 0.79999 0.89944 0.93098 0.94838 0.80566 0.93511 0.86547 0.89223 0.90394 0.90234 0.92142 0.90474 0.90710 0.90565 0.91846 0.89453 0.92978 0.87755 0.86605 0.86272 0.92701 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.34 71.98 0.67 -4.09 16 2 C 0.18 6.52 2.40 44.99 0.11 6.63 16 3 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 4 N -0.75 -34.82 4.62 -322.93 -1.49 -36.32 16 5 C -0.22 -12.41 10.41 84.03 0.87 -11.54 16 6 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 7 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.98 -64.39 13.97 21.65 0.30 -64.08 16 9 Si 0.94 47.57 27.73 68.60 1.90 49.47 16 10 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 12 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 13 C -0.09 -2.71 2.63 -9.40 -0.02 -2.74 16 14 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.11 -2.26 5.58 31.79 0.18 -2.08 16 16 C 0.11 2.48 5.57 86.73 0.48 2.96 16 17 N -0.60 -18.78 3.33 -814.63 -2.71 -21.49 16 18 C 0.60 20.46 7.88 86.93 0.68 21.15 16 19 O -0.56 -22.84 15.76 -3.68 -0.06 -22.90 16 20 C -0.04 -1.11 7.02 42.70 0.30 -0.81 16 21 N -0.34 -8.07 9.78 -49.01 -0.48 -8.55 16 22 O 0.13 2.53 11.19 74.81 0.84 3.36 16 23 C -0.01 -0.22 6.63 24.90 0.17 -0.05 16 24 C -0.17 -3.69 5.72 -20.02 -0.11 -3.81 16 25 C -0.05 -0.95 5.37 29.77 0.16 -0.79 16 26 C -0.12 -1.45 5.55 30.59 0.17 -1.28 16 27 C -0.12 -0.87 5.64 30.36 0.17 -0.70 16 28 C -0.12 -0.69 5.63 30.54 0.17 -0.52 16 29 C -0.04 -0.23 5.55 29.89 0.17 -0.06 16 30 C 0.12 4.09 6.08 86.85 0.53 4.61 16 31 H 0.08 1.88 7.50 -2.39 -0.02 1.86 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.36 16.54 5.66 -92.71 -0.52 16.01 16 35 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.12 1.73 8.13 -2.39 -0.02 1.71 16 37 H 0.09 1.74 8.01 -2.39 -0.02 1.72 16 38 H 0.08 1.71 7.82 -2.39 -0.02 1.70 16 39 H 0.08 1.73 7.67 -2.39 -0.02 1.71 16 40 H 0.06 1.61 7.09 -2.39 -0.02 1.60 16 41 H 0.08 1.59 7.83 -2.39 -0.02 1.57 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.81 5.69 -2.39 -0.01 0.80 16 44 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 45 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.05 0.52 7.79 -2.39 -0.02 0.50 16 47 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.12 0.19 8.14 -2.38 -0.02 0.18 16 49 H 0.12 0.41 6.38 -2.39 -0.02 0.39 16 50 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 51 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 Total: -1.00 -77.81 394.76 3.82 -74.00 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.35 Total: 22.96 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.16 Total: 3.55 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -4.38 Total: -130.44 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.78 Total: -19.54 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.90 Total: 49.47 kcal Total: -77.81 3.82 -74.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569819561.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.751 kcal (2) G-P(sol) polarization free energy of solvation -77.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds