Wall clock time and date at job start Wed Apr 1 2020 04:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 O 1.42901 * 109.46772 * 239.99911 * 2 1 3 5 5 C 1.35724 * 116.99565 * 204.32216 * 4 2 1 6 6 C 1.39227 * 120.38740 * 354.65127 * 5 4 2 7 7 C 1.38319 * 118.44406 * 179.97438 * 6 5 4 8 8 C 1.39466 * 119.13893 * 0.02562 * 7 6 5 9 9 C 1.47923 * 119.65991 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00118 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.64969 * 0.02562 * 11 9 8 13 13 C 1.54319 * 107.27114 * 178.90832 * 12 11 9 14 14 C 1.55156 * 102.94324 * 337.80903 * 13 12 11 15 15 H 1.09005 * 111.00722 * 277.42962 * 14 13 12 16 16 C 1.53001 * 111.00478 * 153.61668 * 14 13 12 17 17 H 1.08997 * 109.46818 * 299.85618 * 16 14 13 18 18 C 1.52998 * 109.47282 * 179.85759 * 16 14 13 19 19 N 1.46497 * 109.47210 * 59.85416 * 16 14 13 20 20 C 1.36933 * 120.00013 * 204.99789 * 19 16 14 21 21 H 1.08004 * 120.00180 * 0.02562 * 20 19 16 22 22 C 1.38818 * 120.00151 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99674 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47103 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46715 * 120.00365 * 24 22 20 27 27 H 1.48501 * 109.46997 * 239.99759 * 24 22 20 28 28 C 1.47422 * 125.64739 * 179.72195 * 11 9 8 29 29 N 1.32801 * 120.68145 * 359.97342 * 8 7 6 30 30 C 1.31381 * 121.69509 * 359.77240 * 29 8 7 31 31 H 1.09004 * 109.47177 * 59.99404 * 1 2 3 32 32 H 1.09011 * 109.46888 * 300.00340 * 1 2 3 33 33 H 1.08996 * 109.47595 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47283 * 120.00204 * 2 1 3 35 35 H 1.09001 * 109.47063 * 299.99785 * 3 2 1 36 36 H 1.08999 * 109.47163 * 60.00306 * 3 2 1 37 37 H 1.09005 * 109.47079 * 180.02562 * 3 2 1 38 38 H 1.07999 * 120.77297 * 0.02562 * 6 5 4 39 39 H 1.08004 * 120.42669 * 179.97438 * 7 6 5 40 40 H 1.08994 * 109.88449 * 298.32705 * 12 11 9 41 41 H 1.09005 * 109.88005 * 59.33812 * 12 11 9 42 42 H 1.09001 * 110.72148 * 96.17703 * 13 12 11 43 43 H 1.09003 * 110.71906 * 219.27214 * 13 12 11 44 44 H 1.09002 * 109.47005 * 56.80589 * 18 16 14 45 45 H 1.08993 * 109.47390 * 176.81044 * 18 16 14 46 46 H 1.08999 * 109.47169 * 296.81547 * 18 16 14 47 47 H 0.97003 * 119.99702 * 25.00284 * 19 16 14 48 48 H 0.97005 * 119.99658 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.36318 * 322.99253 * 28 11 9 50 50 H 1.08993 * 110.37033 * 85.32161 * 28 11 9 51 51 H 1.08000 * 119.60113 * 180.24260 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 3.2506 -1.2118 -1.1027 6 6 4.0510 -1.0039 0.0174 7 6 5.3121 -1.5715 0.0404 8 6 5.7367 -2.3274 -1.0520 9 6 7.0834 -2.9392 -1.0398 10 8 7.8139 -2.7815 -0.0812 11 7 7.5005 -3.6714 -2.0916 12 6 6.7234 -3.9407 -3.3103 13 6 7.6115 -4.7930 -4.2411 14 6 9.0448 -4.4808 -3.7355 15 1 9.4167 -3.5505 -4.1650 16 6 9.9971 -5.6397 -4.0368 17 1 9.6415 -6.5413 -3.5380 18 6 11.3980 -5.2942 -3.5279 19 7 10.0456 -5.8686 -5.4830 20 6 10.3842 -7.1029 -5.9699 21 1 10.6151 -7.9078 -5.2877 22 6 10.4296 -7.3199 -7.3402 23 7 10.1477 -6.3392 -8.1715 24 14 10.8908 -9.0039 -8.0043 25 1 11.1591 -9.9261 -6.8719 26 1 9.7716 -9.5370 -8.8219 27 1 12.1077 -8.8872 -8.8474 28 6 8.8139 -4.3297 -2.2134 29 7 4.9444 -2.5036 -2.1031 30 6 3.7395 -1.9824 -2.1544 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4424 -0.0005 38 1 3.6951 -0.4140 0.8490 39 1 5.9599 -1.4305 0.8930 40 1 5.8166 -4.4901 -3.0579 41 1 6.4637 -3.0017 -3.7994 42 1 7.3844 -5.8529 -4.1266 43 1 7.4901 -4.4839 -5.2793 44 1 11.3521 -5.0685 -2.4625 45 1 12.0634 -6.1419 -3.6914 46 1 11.7765 -4.4258 -4.0671 47 1 9.8379 -5.1458 -6.0956 48 1 10.1798 -6.4908 -9.1291 49 1 9.5923 -3.7080 -1.7712 50 1 8.7929 -5.3095 -1.7363 51 1 3.1221 -2.1505 -3.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569828428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:32 Heat of formation + Delta-G solvation = -22.390994 kcal Electronic energy + Delta-G solvation = -30166.028421 eV Core-core repulsion = 26066.210695 eV Total energy + Delta-G solvation = -4099.817726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28618 -39.99451 -38.69655 -37.57447 -35.16214 -33.90855 -32.79693 -32.29456 -30.97144 -30.11148 -29.11724 -27.91844 -27.38224 -25.33799 -24.39522 -23.78154 -22.80725 -21.70215 -21.31730 -19.91136 -19.55534 -18.79669 -17.67871 -17.17412 -16.93002 -16.16203 -16.00470 -15.84563 -15.10733 -14.96378 -14.88220 -14.47169 -14.17772 -13.86449 -13.70835 -13.49306 -13.32079 -13.16545 -13.12483 -12.88520 -12.83324 -12.56302 -12.48222 -12.34254 -12.26719 -11.99088 -11.63375 -11.55646 -11.36265 -11.13483 -10.87084 -10.63059 -10.52189 -10.44841 -10.22569 -10.15553 -10.12823 -9.77599 -9.65900 -9.59645 -8.88605 -8.86600 -8.43459 -6.92406 -5.73747 -3.01655 0.43773 0.80953 2.50347 2.64059 3.00032 3.45095 3.51220 3.53021 3.62627 3.96131 4.07210 4.20488 4.25141 4.35052 4.47013 4.57569 4.61938 4.72809 4.94277 4.98254 5.01801 5.09194 5.10566 5.16600 5.26017 5.39965 5.46698 5.52476 5.57729 5.58455 5.60495 5.62393 5.71538 5.85357 5.93060 5.93647 6.08375 6.13132 6.20501 6.32711 6.37743 6.51870 6.53659 6.70425 6.72025 6.75333 6.92419 7.15187 7.42947 7.60784 7.74052 8.15707 8.44901 9.56434 10.14219 10.49383 11.48995 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.001919 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.068313 B =14588.562374 C =15605.230671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.183 4.183 4 O -0.299 6.299 5 C 0.104 3.896 6 C -0.179 4.179 7 C -0.068 4.068 8 C 0.042 3.958 9 C 0.584 3.416 10 O -0.546 6.546 11 N -0.595 5.595 12 C 0.115 3.885 13 C -0.120 4.120 14 C -0.103 4.103 15 H 0.079 0.921 16 C 0.185 3.815 17 H 0.049 0.951 18 C -0.167 4.167 19 N -0.721 5.721 20 C -0.234 4.234 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.113 3.887 29 N -0.409 5.409 30 C 0.073 3.927 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.384 0.616 48 H 0.253 0.747 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.559 15.317 18.587 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 C -0.240 4.240 4 O -0.211 6.211 5 C 0.055 3.945 6 C -0.205 4.205 7 C -0.088 4.088 8 C -0.096 4.096 9 C 0.371 3.629 10 O -0.424 6.424 11 N -0.326 5.326 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.123 4.123 15 H 0.098 0.902 16 C 0.075 3.925 17 H 0.067 0.933 18 C -0.227 4.227 19 N -0.362 5.362 20 C -0.365 4.365 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.009 4.009 29 N -0.121 5.121 30 C -0.089 4.089 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.217 0.783 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.969 14.750 18.285 30.194 hybrid contribution -0.065 -0.021 0.184 0.196 sum -19.034 14.729 18.469 30.337 Atomic orbital electron populations 1.21862 0.91907 1.03473 1.03367 1.22566 0.95885 0.92762 0.87041 1.22416 1.02259 0.95737 1.03612 1.86132 1.27896 1.67820 1.39278 1.20462 0.85377 0.93257 0.95381 1.21727 0.95258 1.04421 0.99141 1.21924 0.95148 0.93126 0.98644 1.21000 0.95481 1.01008 0.92076 1.17346 0.85030 0.78514 0.82010 1.90778 1.55599 1.62052 1.34004 1.48374 1.17462 1.49121 1.17649 1.22231 0.94278 1.00097 0.84134 1.22658 0.93451 1.00319 0.99351 1.22620 0.96191 1.00617 0.92844 0.90224 1.20129 0.91520 0.93725 0.87144 0.93298 1.22487 1.00277 1.01500 0.98445 1.42363 1.82679 1.11693 0.99510 1.19272 1.38081 0.88722 0.90409 0.91192 1.24715 1.02813 0.97489 0.96027 1.69669 1.55826 1.30774 1.01871 0.86154 0.77623 0.83906 0.78747 1.20623 1.21976 1.22001 1.22328 0.83924 0.97340 0.97340 1.67939 1.03090 1.17023 1.24039 1.22361 0.92617 0.95859 0.98060 0.91180 0.90275 0.91416 0.90683 0.91074 0.90652 0.91750 0.83618 0.83195 0.91031 0.90840 0.90405 0.89579 0.94386 0.92885 0.93386 0.78266 0.93658 0.90453 0.91091 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.56 37.16 0.36 -0.20 16 2 C 0.07 0.37 2.85 -26.74 -0.08 0.30 16 3 C -0.18 -0.79 9.17 37.15 0.34 -0.45 16 4 O -0.30 -2.33 9.81 -18.88 -0.19 -2.52 16 5 C 0.10 0.92 6.62 -38.84 -0.26 0.66 16 6 C -0.18 -1.47 8.29 -39.18 -0.32 -1.80 16 7 C -0.07 -0.71 9.62 -39.09 -0.38 -1.08 16 8 C 0.04 0.54 6.72 -83.02 -0.56 -0.02 16 9 C 0.58 9.04 7.83 -12.29 -0.10 8.95 16 10 O -0.55 -9.66 16.57 5.32 0.09 -9.57 16 11 N -0.59 -8.98 3.33 -171.75 -0.57 -9.55 16 12 C 0.12 1.61 5.40 -3.07 -0.02 1.59 16 13 C -0.12 -1.88 6.09 -24.90 -0.15 -2.03 16 14 C -0.10 -1.68 2.60 -88.59 -0.23 -1.91 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.19 3.56 2.42 -67.93 -0.16 3.40 16 17 H 0.05 0.96 8.01 -51.93 -0.42 0.55 16 18 C -0.17 -3.01 9.40 37.16 0.35 -2.66 16 19 N -0.72 -17.39 4.77 -53.43 -0.26 -17.65 16 20 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 24 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.11 1.72 5.60 -2.65 -0.01 1.71 16 29 N -0.41 -4.94 6.82 -9.67 -0.07 -5.00 16 30 C 0.07 0.72 11.14 -17.37 -0.19 0.52 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.32 6.38 -51.93 -0.33 -0.01 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.32 6.86 -51.93 -0.36 -0.03 16 38 H 0.15 0.80 5.55 -52.49 -0.29 0.51 16 39 H 0.15 1.46 7.63 -52.48 -0.40 1.06 16 40 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 41 H 0.07 1.01 7.40 -51.93 -0.38 0.62 16 42 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.04 0.58 7.38 -51.93 -0.38 0.20 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.08 1.19 7.92 -51.93 -0.41 0.78 16 50 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 51 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 409.94 15.07 6.18 6.18 Total: -1.00 -32.16 409.94 -9.06 -41.22 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.29 Total: 6.68 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.66 Total: -0.02 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.17 Total: -59.24 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.10 Total: -12.09 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.16 -9.06 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569828428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.828 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds