Wall clock time and date at job start Wed Apr 1 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 O 1.42901 * 109.46772 * 239.99911 * 2 1 3 5 5 C 1.35724 * 116.99565 * 204.32216 * 4 2 1 6 6 C 1.39227 * 120.38740 * 354.65127 * 5 4 2 7 7 C 1.38319 * 118.44406 * 179.97438 * 6 5 4 8 8 C 1.39466 * 119.13893 * 0.02562 * 7 6 5 9 9 C 1.47923 * 119.65991 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00118 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.64969 * 0.02562 * 11 9 8 13 13 C 1.54319 * 107.27114 * 178.90832 * 12 11 9 14 14 C 1.55156 * 102.94324 * 337.80903 * 13 12 11 15 15 H 1.09005 * 111.00722 * 277.42962 * 14 13 12 16 16 C 1.53001 * 111.00478 * 153.61668 * 14 13 12 17 17 H 1.08997 * 109.46818 * 299.85618 * 16 14 13 18 18 C 1.52998 * 109.47282 * 179.85759 * 16 14 13 19 19 N 1.46497 * 109.47210 * 59.85416 * 16 14 13 20 20 C 1.36933 * 120.00013 * 204.99789 * 19 16 14 21 21 H 1.08004 * 120.00180 * 0.02562 * 20 19 16 22 22 C 1.38818 * 120.00151 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99674 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47103 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46715 * 120.00365 * 24 22 20 27 27 H 1.48501 * 109.46997 * 239.99759 * 24 22 20 28 28 C 1.47422 * 125.64739 * 179.72195 * 11 9 8 29 29 N 1.32801 * 120.68145 * 359.97342 * 8 7 6 30 30 C 1.31381 * 121.69509 * 359.77240 * 29 8 7 31 31 H 1.09004 * 109.47177 * 59.99404 * 1 2 3 32 32 H 1.09011 * 109.46888 * 300.00340 * 1 2 3 33 33 H 1.08996 * 109.47595 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47283 * 120.00204 * 2 1 3 35 35 H 1.09001 * 109.47063 * 299.99785 * 3 2 1 36 36 H 1.08999 * 109.47163 * 60.00306 * 3 2 1 37 37 H 1.09005 * 109.47079 * 180.02562 * 3 2 1 38 38 H 1.07999 * 120.77297 * 0.02562 * 6 5 4 39 39 H 1.08004 * 120.42669 * 179.97438 * 7 6 5 40 40 H 1.08994 * 109.88449 * 298.32705 * 12 11 9 41 41 H 1.09005 * 109.88005 * 59.33812 * 12 11 9 42 42 H 1.09001 * 110.72148 * 96.17703 * 13 12 11 43 43 H 1.09003 * 110.71906 * 219.27214 * 13 12 11 44 44 H 1.09002 * 109.47005 * 56.80589 * 18 16 14 45 45 H 1.08993 * 109.47390 * 176.81044 * 18 16 14 46 46 H 1.08999 * 109.47169 * 296.81547 * 18 16 14 47 47 H 0.97003 * 119.99702 * 25.00284 * 19 16 14 48 48 H 0.97005 * 119.99658 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.36318 * 322.99253 * 28 11 9 50 50 H 1.08993 * 110.37033 * 85.32161 * 28 11 9 51 51 H 1.08000 * 119.60113 * 180.24260 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 3.2506 -1.2118 -1.1027 6 6 4.0510 -1.0039 0.0174 7 6 5.3121 -1.5715 0.0404 8 6 5.7367 -2.3274 -1.0520 9 6 7.0834 -2.9392 -1.0398 10 8 7.8139 -2.7815 -0.0812 11 7 7.5005 -3.6714 -2.0916 12 6 6.7234 -3.9407 -3.3103 13 6 7.6115 -4.7930 -4.2411 14 6 9.0448 -4.4808 -3.7355 15 1 9.4167 -3.5505 -4.1650 16 6 9.9971 -5.6397 -4.0368 17 1 9.6415 -6.5413 -3.5380 18 6 11.3980 -5.2942 -3.5279 19 7 10.0456 -5.8686 -5.4830 20 6 10.3842 -7.1029 -5.9699 21 1 10.6151 -7.9078 -5.2877 22 6 10.4296 -7.3199 -7.3402 23 7 10.1477 -6.3392 -8.1715 24 14 10.8908 -9.0039 -8.0043 25 1 11.1591 -9.9261 -6.8719 26 1 9.7716 -9.5370 -8.8219 27 1 12.1077 -8.8872 -8.8474 28 6 8.8139 -4.3297 -2.2134 29 7 4.9444 -2.5036 -2.1031 30 6 3.7395 -1.9824 -2.1544 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4424 -0.0005 38 1 3.6951 -0.4140 0.8490 39 1 5.9599 -1.4305 0.8930 40 1 5.8166 -4.4901 -3.0579 41 1 6.4637 -3.0017 -3.7994 42 1 7.3844 -5.8529 -4.1266 43 1 7.4901 -4.4839 -5.2793 44 1 11.3521 -5.0685 -2.4625 45 1 12.0634 -6.1419 -3.6914 46 1 11.7765 -4.4258 -4.0671 47 1 9.8379 -5.1458 -6.0956 48 1 10.1798 -6.4908 -9.1291 49 1 9.5923 -3.7080 -1.7712 50 1 8.7929 -5.3095 -1.7363 51 1 3.1221 -2.1505 -3.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569828428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:31 Heat of formation + Delta-G solvation = -41.365418 kcal Electronic energy + Delta-G solvation = -30166.851214 eV Core-core repulsion = 26066.210695 eV Total energy + Delta-G solvation = -4100.640519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07705 -41.00697 -39.58185 -38.80723 -36.78832 -34.42337 -34.20152 -33.41592 -32.16805 -31.19463 -30.75199 -28.82394 -28.19409 -26.50355 -25.72804 -24.88111 -23.92940 -22.77225 -22.28500 -21.08988 -20.89598 -19.39882 -19.14969 -18.57495 -17.96055 -17.30388 -16.93386 -16.66597 -16.47969 -15.95711 -15.68259 -15.58971 -15.42656 -15.05826 -14.90739 -14.66681 -14.45266 -14.25821 -13.99691 -13.93334 -13.77616 -13.47504 -13.41258 -13.32501 -13.17524 -13.11686 -12.90321 -12.81438 -12.73237 -12.28373 -12.10709 -12.02360 -11.95852 -11.78153 -11.63937 -11.52640 -11.45088 -11.28101 -10.94967 -10.90462 -10.57632 -9.78701 -9.46776 -8.94953 -7.88659 -5.15389 -0.40041 0.08690 1.49734 1.50311 1.59702 1.61342 1.83015 2.00614 2.59839 2.73944 3.04865 3.43854 3.46239 3.51461 3.68560 3.71141 3.77341 3.86868 3.89792 3.95727 3.99197 4.13237 4.26112 4.37814 4.41672 4.55465 4.60631 4.65082 4.67654 4.69297 4.73673 4.77962 4.84151 4.86526 4.88075 4.89909 4.98853 5.03980 5.10302 5.17542 5.22658 5.24157 5.26326 5.29143 5.38575 5.41025 5.57987 5.63551 6.14351 6.33457 6.40853 6.62245 7.01969 7.40497 8.16616 8.40598 9.34899 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.001919 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.068313 B =14588.562374 C =15605.230671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 C -0.181 4.181 4 O -0.306 6.306 5 C 0.116 3.884 6 C -0.170 4.170 7 C -0.066 4.066 8 C 0.013 3.987 9 C 0.580 3.420 10 O -0.575 6.575 11 N -0.599 5.599 12 C 0.130 3.870 13 C -0.115 4.115 14 C -0.093 4.093 15 H 0.076 0.924 16 C 0.183 3.817 17 H 0.047 0.953 18 C -0.159 4.159 19 N -0.730 5.730 20 C -0.229 4.229 21 H 0.074 0.926 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.295 1.295 27 H -0.297 1.297 28 C 0.119 3.881 29 N -0.425 5.425 30 C 0.065 3.935 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.176 0.824 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.373 0.627 48 H 0.248 0.752 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.226 16.029 20.454 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 C -0.239 4.239 4 O -0.218 6.218 5 C 0.066 3.934 6 C -0.196 4.196 7 C -0.087 4.087 8 C -0.124 4.124 9 C 0.370 3.630 10 O -0.456 6.456 11 N -0.330 5.330 12 C 0.008 3.992 13 C -0.153 4.153 14 C -0.113 4.113 15 H 0.094 0.906 16 C 0.074 3.926 17 H 0.065 0.935 18 C -0.218 4.218 19 N -0.370 5.370 20 C -0.361 4.361 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.223 1.223 27 H -0.225 1.225 28 C -0.004 4.004 29 N -0.136 5.136 30 C -0.098 4.098 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.193 0.807 39 H 0.172 0.828 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.205 0.795 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.641 15.458 20.202 32.759 hybrid contribution 0.310 -0.143 -0.299 0.454 sum -20.331 15.315 19.903 32.311 Atomic orbital electron populations 1.21897 0.90857 1.03502 1.04212 1.22891 0.96741 0.93058 0.86448 1.22419 1.01814 0.95277 1.04356 1.86151 1.27125 1.67620 1.40884 1.20482 0.85764 0.92186 0.94978 1.21971 0.94075 1.03765 0.99744 1.22005 0.96043 0.92668 0.97980 1.20742 0.94807 1.03121 0.93697 1.17775 0.85894 0.77991 0.81382 1.90744 1.56754 1.63151 1.34926 1.48423 1.17349 1.49240 1.18006 1.22093 0.93800 0.99929 0.83355 1.22562 0.93539 1.00037 0.99168 1.22414 0.95775 0.99145 0.93924 0.90551 1.20293 0.92979 0.94834 0.84500 0.93473 1.22352 0.98692 1.00563 1.00230 1.42508 1.82521 1.10525 1.01419 1.19610 1.36181 0.89754 0.90573 0.90817 1.25446 1.04086 1.00730 0.96537 1.69813 1.57852 1.32588 1.01671 0.85173 0.76719 0.80381 0.78118 1.19238 1.22283 1.22505 1.22207 0.84414 0.97680 0.96056 1.67817 1.03926 1.17819 1.24073 1.22658 0.92125 0.95889 0.99097 0.91572 0.88228 0.91799 0.89462 0.91696 0.88636 0.92380 0.80671 0.82831 0.90288 0.90423 0.91330 0.90703 0.91407 0.94310 0.93979 0.79465 0.94262 0.90398 0.90680 0.79550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.56 71.98 0.69 -0.03 16 2 C 0.06 0.47 2.85 30.59 0.09 0.56 16 3 C -0.18 -1.07 9.17 71.98 0.66 -0.41 16 4 O -0.31 -4.07 9.81 -90.47 -0.89 -4.95 16 5 C 0.12 1.79 6.62 22.75 0.15 1.94 16 6 C -0.17 -2.39 8.29 22.53 0.19 -2.20 16 7 C -0.07 -1.30 9.62 22.59 0.22 -1.08 16 8 C 0.01 0.32 6.72 41.86 0.28 0.60 16 9 C 0.58 17.87 7.83 86.81 0.68 18.55 16 10 O -0.58 -20.31 16.57 -3.87 -0.06 -20.38 16 11 N -0.60 -17.88 3.33 -815.57 -2.71 -20.59 16 12 C 0.13 3.59 5.40 86.73 0.47 4.06 16 13 C -0.11 -3.62 6.09 31.78 0.19 -3.43 16 14 C -0.09 -3.01 2.60 -9.48 -0.02 -3.03 16 15 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 16 C 0.18 6.99 2.42 44.99 0.11 7.10 16 17 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 18 C -0.16 -5.61 9.40 71.98 0.68 -4.93 16 19 N -0.73 -35.56 4.77 -322.95 -1.54 -37.10 16 20 C -0.23 -12.46 9.93 84.04 0.83 -11.63 16 21 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 23 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 24 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 28 C 0.12 3.55 5.60 86.78 0.49 4.04 16 29 N -0.42 -9.88 6.82 -184.52 -1.26 -11.14 16 30 C 0.07 1.19 11.14 85.00 0.95 2.13 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.45 6.38 -2.39 -0.02 0.43 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.06 0.43 6.86 -2.38 -0.02 0.41 16 38 H 0.18 1.33 5.55 -2.91 -0.02 1.32 16 39 H 0.15 2.84 7.63 -2.91 -0.02 2.82 16 40 H 0.08 2.08 7.53 -2.39 -0.02 2.06 16 41 H 0.08 2.10 7.40 -2.38 -0.02 2.08 16 42 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.07 1.98 7.38 -2.39 -0.02 1.96 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.37 19.62 7.80 -92.71 -0.72 18.89 16 48 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 49 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 50 H 0.07 2.18 7.98 -2.39 -0.02 2.16 16 51 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -69.25 409.94 3.16 -66.09 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.21 Total: 29.86 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 7.11 Total: 8.38 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -5.23 Total: -127.20 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.95 Total: -25.33 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.25 3.16 -66.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569828428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.723 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds