Wall clock time and date at job start Wed Apr 1 2020 04:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 O 1.42907 * 109.47323 * 120.00281 * 2 1 3 5 5 C 1.35712 * 117.00088 * 85.25174 * 4 2 1 6 6 C 1.39235 * 120.38320 * 354.63127 * 5 4 2 7 7 C 1.38320 * 118.44999 * 179.97438 * 6 5 4 8 8 C 1.39475 * 119.12820 * 359.97438 * 7 6 5 9 9 C 1.47927 * 119.65432 * 179.97438 * 8 7 6 10 10 O 1.21547 * 120.00108 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99542 * 180.02562 * 9 8 7 12 12 C 1.47182 * 125.73731 * 359.86303 * 11 9 8 13 13 C 1.54329 * 107.29221 * 181.02859 * 12 11 9 14 14 C 1.55162 * 102.93904 * 22.28568 * 13 12 11 15 15 H 1.08997 * 111.03720 * 82.58723 * 14 13 12 16 16 C 1.52997 * 111.00069 * 206.41999 * 14 13 12 17 17 H 1.09003 * 109.47251 * 53.65153 * 16 14 13 18 18 C 1.53003 * 109.47413 * 293.65246 * 16 14 13 19 19 N 1.46506 * 109.47434 * 173.65113 * 16 14 13 20 20 C 1.36932 * 120.00301 * 205.00236 * 19 16 14 21 21 H 1.08001 * 120.00071 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00062 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47254 * 59.99544 * 24 22 20 26 26 H 1.48494 * 109.47209 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46555 * 300.00069 * 24 22 20 28 28 C 1.47428 * 125.64449 * 180.02562 * 11 9 8 29 29 N 1.32797 * 120.68451 * 0.28047 * 8 7 6 30 30 C 1.31379 * 121.69489 * 359.43274 * 29 8 7 31 31 H 1.09007 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47106 * 299.99699 * 1 2 3 33 33 H 1.08996 * 109.47501 * 59.99971 * 1 2 3 34 34 H 1.08999 * 109.47106 * 240.00301 * 2 1 3 35 35 H 1.09007 * 109.47336 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47388 * 300.00225 * 3 2 1 37 37 H 1.08999 * 109.46819 * 60.00125 * 3 2 1 38 38 H 1.08008 * 120.77628 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.43960 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.79544 * 61.64904 * 12 11 9 41 41 H 1.09002 * 110.07763 * 300.56721 * 12 11 9 42 42 H 1.08997 * 110.72029 * 263.92093 * 13 12 11 43 43 H 1.09000 * 110.87168 * 140.71795 * 13 12 11 44 44 H 1.09004 * 109.47111 * 60.00044 * 18 16 14 45 45 H 1.09005 * 109.47082 * 179.97438 * 18 16 14 46 46 H 1.08996 * 109.46666 * 299.99774 * 18 16 14 47 47 H 0.97001 * 119.98997 * 24.99997 * 19 16 14 48 48 H 0.96996 * 119.99937 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.36634 * 36.99315 * 28 11 9 50 50 H 1.08998 * 110.36446 * 274.77942 * 28 11 9 51 51 H 1.07999 * 119.59687 * 180.29182 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1173 -2.0244 1.0962 6 6 1.6718 -2.7097 -0.0310 7 6 1.8049 -4.0861 -0.0608 8 6 2.3777 -4.7366 1.0319 9 6 2.5252 -6.2084 1.0126 10 8 2.1486 -6.8444 0.0477 11 7 3.0773 -6.8441 2.0651 12 6 3.5770 -6.2021 3.2916 13 6 4.1402 -7.3180 4.1968 14 6 4.4441 -8.4604 3.1916 15 1 5.4092 -8.3096 2.7081 16 6 4.3859 -9.8258 3.8795 17 1 3.4295 -9.9346 4.3908 18 6 5.5234 -9.9331 4.8972 19 7 4.5266 -10.8843 2.8764 20 6 4.0151 -12.1309 3.1201 21 1 3.5075 -12.3337 4.0516 22 6 4.1479 -13.1336 2.1696 23 7 4.7652 -12.8861 1.0337 24 14 3.4495 -14.8340 2.5016 25 1 1.9833 -14.7340 2.7150 26 1 3.7219 -15.7168 1.3391 27 1 4.0885 -15.4032 3.7153 28 6 3.2844 -8.2994 2.1777 29 7 2.7865 -4.0490 2.0919 30 6 2.6794 -2.7409 2.1494 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.2324 -2.1789 -0.8627 39 1 1.4705 -4.6497 -0.9193 40 1 2.7597 -5.6901 3.7995 41 1 4.3652 -5.4901 3.0469 42 1 3.3957 -7.6348 4.9271 43 1 5.0524 -6.9903 4.6954 44 1 5.4186 -9.1456 5.6435 45 1 5.4816 -10.9058 5.3875 46 1 6.4798 -9.8243 4.3858 47 1 4.9822 -10.7020 2.0397 48 1 4.8584 -13.5869 0.3696 49 1 3.5645 -8.7186 1.2113 50 1 2.3826 -8.7829 2.5532 51 1 3.0272 -2.2153 3.0264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569828430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:39 Heat of formation + Delta-G solvation = -21.489943 kcal Electronic energy + Delta-G solvation = -30249.281498 eV Core-core repulsion = 26149.502844 eV Total energy + Delta-G solvation = -4099.778654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25207 -39.91811 -38.66281 -37.51063 -35.11976 -33.89687 -32.78027 -32.29815 -30.92868 -30.17088 -28.44756 -28.08229 -27.86071 -25.18012 -24.20190 -23.75577 -22.92638 -21.67462 -21.38028 -19.80398 -19.54570 -18.77877 -17.65799 -17.15075 -16.83422 -16.15212 -15.80870 -15.80571 -15.16088 -14.90688 -14.74294 -14.45642 -14.29665 -13.88999 -13.60206 -13.55442 -13.50259 -13.16469 -12.98163 -12.87066 -12.80986 -12.53779 -12.44555 -12.41945 -12.03630 -11.90615 -11.59558 -11.46986 -11.32497 -11.26521 -10.82031 -10.66468 -10.54734 -10.43698 -10.20474 -10.18920 -10.14535 -9.79103 -9.63461 -9.54500 -8.84812 -8.82777 -8.32834 -6.89692 -5.69471 -2.98286 0.47899 0.83411 2.52067 2.72440 3.09870 3.48801 3.53153 3.54196 3.68392 3.98668 4.08885 4.22235 4.26887 4.37798 4.49248 4.59913 4.65266 4.76435 4.90966 4.95436 5.02883 5.09921 5.11789 5.16961 5.19350 5.42125 5.47741 5.54378 5.56552 5.60620 5.63438 5.64393 5.74661 5.90411 5.94197 6.01407 6.05723 6.08675 6.24465 6.27596 6.41821 6.46858 6.50656 6.66390 6.71662 6.77065 6.92435 7.14670 7.45208 7.72030 7.75779 8.28380 8.48654 9.59802 10.17302 10.51911 11.53010 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.001948 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.028976 B =14371.676471 C =15215.418997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.300 6.300 5 C 0.102 3.898 6 C -0.178 4.178 7 C -0.067 4.067 8 C 0.045 3.955 9 C 0.581 3.419 10 O -0.537 6.537 11 N -0.598 5.598 12 C 0.119 3.881 13 C -0.130 4.130 14 C -0.101 4.101 15 H 0.080 0.920 16 C 0.184 3.816 17 H 0.049 0.951 18 C -0.163 4.163 19 N -0.724 5.724 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.119 3.881 29 N -0.412 5.412 30 C 0.071 3.929 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 31.376 0.839 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.206 4.206 4 O -0.212 6.212 5 C 0.053 3.947 6 C -0.204 4.204 7 C -0.088 4.088 8 C -0.093 4.093 9 C 0.368 3.632 10 O -0.414 6.414 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.168 4.168 14 C -0.122 4.122 15 H 0.098 0.902 16 C 0.074 3.926 17 H 0.067 0.933 18 C -0.223 4.223 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.002 4.002 29 N -0.124 5.124 30 C -0.091 4.091 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.476 30.558 1.145 31.066 hybrid contribution -0.651 -0.448 -1.037 1.304 sum -6.126 30.109 0.108 30.727 Atomic orbital electron populations 1.22402 0.94642 1.03343 1.03564 1.22569 0.94646 0.93970 0.87110 1.21864 1.02307 0.93093 1.03335 1.86117 1.80431 1.15595 1.39081 1.20441 0.94977 0.83837 0.95411 1.21733 1.04721 0.94954 0.99032 1.21964 0.94349 0.93678 0.98817 1.21069 1.01794 0.94550 0.91843 1.17338 0.78561 0.85229 0.82110 1.90824 1.50549 1.66613 1.33398 1.48428 1.58495 1.09101 1.16998 1.22103 0.98957 0.94937 0.84373 1.22782 1.01372 0.95085 0.97601 1.22654 0.98108 0.95888 0.95500 0.90180 1.20166 0.96353 0.85917 0.90150 0.93328 1.22429 1.00281 1.00440 0.99166 1.42416 1.68554 1.07612 1.17976 1.19161 1.29178 0.87557 1.00976 0.91291 1.24726 1.01410 0.98213 0.96562 1.69650 1.47646 1.32960 1.07744 0.86299 0.78722 0.84537 0.76803 1.21337 1.21786 1.21387 1.22305 0.98593 0.78238 1.01086 1.67903 1.13093 1.07142 1.24233 1.22309 0.99841 0.88901 0.98038 0.91749 0.91132 0.90647 0.90621 0.91439 0.90271 0.91238 0.83621 0.83085 0.91096 0.90937 0.90624 0.90205 0.94368 0.92839 0.93542 0.78268 0.93517 0.89754 0.90863 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.81 9.19 37.15 0.34 -0.47 16 2 C 0.07 0.38 2.85 -26.74 -0.08 0.30 16 3 C -0.15 -0.55 9.56 37.16 0.36 -0.20 16 4 O -0.30 -2.32 9.80 -18.84 -0.18 -2.50 16 5 C 0.10 0.90 6.63 -38.84 -0.26 0.65 16 6 C -0.18 -1.55 8.34 -39.18 -0.33 -1.87 16 7 C -0.07 -0.76 9.62 -39.09 -0.38 -1.14 16 8 C 0.05 0.61 6.72 -83.02 -0.56 0.06 16 9 C 0.58 9.88 7.83 -12.29 -0.10 9.79 16 10 O -0.54 -10.88 16.57 5.32 0.09 -10.79 16 11 N -0.60 -9.71 3.33 -171.48 -0.57 -10.28 16 12 C 0.12 1.54 5.40 -2.97 -0.02 1.53 16 13 C -0.13 -1.64 5.59 -24.89 -0.14 -1.78 16 14 C -0.10 -1.66 2.62 -88.48 -0.23 -1.89 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 16 C 0.18 3.55 2.40 -67.93 -0.16 3.39 16 17 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 18 C -0.16 -2.85 9.34 37.16 0.35 -2.51 16 19 N -0.72 -17.93 4.82 -53.42 -0.26 -18.19 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.12 2.17 6.08 -2.54 -0.02 2.15 16 29 N -0.41 -4.91 6.84 -9.67 -0.07 -4.98 16 30 C 0.07 0.68 11.14 -17.38 -0.19 0.48 16 31 H 0.06 0.34 6.97 -51.93 -0.36 -0.03 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.35 6.32 -51.93 -0.33 0.02 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.15 0.88 5.59 -52.48 -0.29 0.59 16 39 H 0.15 1.66 7.63 -52.49 -0.40 1.26 16 40 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 41 H 0.07 0.90 7.43 -51.93 -0.39 0.51 16 42 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 43 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 44 H 0.04 0.54 7.50 -51.93 -0.39 0.15 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 48 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.08 1.78 8.04 -51.93 -0.42 1.36 16 50 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 51 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 410.39 15.07 6.18 6.18 Total: -1.00 -33.41 410.39 -9.07 -42.48 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.31 Total: 6.88 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.65 Total: 1.28 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.17 Total: -61.27 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.10 Total: -13.29 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.41 -9.07 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569828430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.991 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds