Wall clock time and date at job start Wed Apr 1 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 O 1.42907 * 109.47323 * 120.00281 * 2 1 3 5 5 C 1.35712 * 117.00088 * 85.25174 * 4 2 1 6 6 C 1.39235 * 120.38320 * 354.63127 * 5 4 2 7 7 C 1.38320 * 118.44999 * 179.97438 * 6 5 4 8 8 C 1.39475 * 119.12820 * 359.97438 * 7 6 5 9 9 C 1.47927 * 119.65432 * 179.97438 * 8 7 6 10 10 O 1.21547 * 120.00108 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99542 * 180.02562 * 9 8 7 12 12 C 1.47182 * 125.73731 * 359.86303 * 11 9 8 13 13 C 1.54329 * 107.29221 * 181.02859 * 12 11 9 14 14 C 1.55162 * 102.93904 * 22.28568 * 13 12 11 15 15 H 1.08997 * 111.03720 * 82.58723 * 14 13 12 16 16 C 1.52997 * 111.00069 * 206.41999 * 14 13 12 17 17 H 1.09003 * 109.47251 * 53.65153 * 16 14 13 18 18 C 1.53003 * 109.47413 * 293.65246 * 16 14 13 19 19 N 1.46506 * 109.47434 * 173.65113 * 16 14 13 20 20 C 1.36932 * 120.00301 * 205.00236 * 19 16 14 21 21 H 1.08001 * 120.00071 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00062 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47254 * 59.99544 * 24 22 20 26 26 H 1.48494 * 109.47209 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46555 * 300.00069 * 24 22 20 28 28 C 1.47428 * 125.64449 * 180.02562 * 11 9 8 29 29 N 1.32797 * 120.68451 * 0.28047 * 8 7 6 30 30 C 1.31379 * 121.69489 * 359.43274 * 29 8 7 31 31 H 1.09007 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47106 * 299.99699 * 1 2 3 33 33 H 1.08996 * 109.47501 * 59.99971 * 1 2 3 34 34 H 1.08999 * 109.47106 * 240.00301 * 2 1 3 35 35 H 1.09007 * 109.47336 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47388 * 300.00225 * 3 2 1 37 37 H 1.08999 * 109.46819 * 60.00125 * 3 2 1 38 38 H 1.08008 * 120.77628 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.43960 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.79544 * 61.64904 * 12 11 9 41 41 H 1.09002 * 110.07763 * 300.56721 * 12 11 9 42 42 H 1.08997 * 110.72029 * 263.92093 * 13 12 11 43 43 H 1.09000 * 110.87168 * 140.71795 * 13 12 11 44 44 H 1.09004 * 109.47111 * 60.00044 * 18 16 14 45 45 H 1.09005 * 109.47082 * 179.97438 * 18 16 14 46 46 H 1.08996 * 109.46666 * 299.99774 * 18 16 14 47 47 H 0.97001 * 119.98997 * 24.99997 * 19 16 14 48 48 H 0.96996 * 119.99937 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.36634 * 36.99315 * 28 11 9 50 50 H 1.08998 * 110.36446 * 274.77942 * 28 11 9 51 51 H 1.07999 * 119.59687 * 180.29182 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1173 -2.0244 1.0962 6 6 1.6718 -2.7097 -0.0310 7 6 1.8049 -4.0861 -0.0608 8 6 2.3777 -4.7366 1.0319 9 6 2.5252 -6.2084 1.0126 10 8 2.1486 -6.8444 0.0477 11 7 3.0773 -6.8441 2.0651 12 6 3.5770 -6.2021 3.2916 13 6 4.1402 -7.3180 4.1968 14 6 4.4441 -8.4604 3.1916 15 1 5.4092 -8.3096 2.7081 16 6 4.3859 -9.8258 3.8795 17 1 3.4295 -9.9346 4.3908 18 6 5.5234 -9.9331 4.8972 19 7 4.5266 -10.8843 2.8764 20 6 4.0151 -12.1309 3.1201 21 1 3.5075 -12.3337 4.0516 22 6 4.1479 -13.1336 2.1696 23 7 4.7652 -12.8861 1.0337 24 14 3.4495 -14.8340 2.5016 25 1 1.9833 -14.7340 2.7150 26 1 3.7219 -15.7168 1.3391 27 1 4.0885 -15.4032 3.7153 28 6 3.2844 -8.2994 2.1777 29 7 2.7865 -4.0490 2.0919 30 6 2.6794 -2.7409 2.1494 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.2324 -2.1789 -0.8627 39 1 1.4705 -4.6497 -0.9193 40 1 2.7597 -5.6901 3.7995 41 1 4.3652 -5.4901 3.0469 42 1 3.3957 -7.6348 4.9271 43 1 5.0524 -6.9903 4.6954 44 1 5.4186 -9.1456 5.6435 45 1 5.4816 -10.9058 5.3875 46 1 6.4798 -9.8243 4.3858 47 1 4.9822 -10.7020 2.0397 48 1 4.8584 -13.5869 0.3696 49 1 3.5645 -8.7186 1.2113 50 1 2.3826 -8.7829 2.5532 51 1 3.0272 -2.2153 3.0264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569828430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:38 Heat of formation + Delta-G solvation = -42.609827 kcal Electronic energy + Delta-G solvation = -30250.197325 eV Core-core repulsion = 26149.502844 eV Total energy + Delta-G solvation = -4100.694481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07959 -40.99160 -39.57477 -38.82053 -36.78773 -34.43962 -34.23182 -33.42635 -32.21751 -31.32978 -29.98143 -29.50352 -28.19596 -26.19616 -25.81347 -24.93010 -23.93216 -22.81996 -22.27516 -21.06564 -20.88218 -19.43055 -19.18495 -18.50557 -17.97118 -17.24601 -16.87629 -16.71408 -16.47687 -16.03566 -15.64727 -15.57602 -15.45079 -15.16569 -15.07605 -14.55302 -14.44968 -14.31292 -14.00146 -13.91751 -13.69881 -13.43971 -13.35115 -13.32164 -13.13927 -13.09125 -12.89237 -12.77652 -12.59420 -12.33904 -12.24089 -12.03323 -11.99221 -11.76101 -11.68498 -11.53476 -11.44129 -11.27364 -10.96545 -10.90706 -10.60599 -9.79075 -9.46409 -8.96822 -7.90309 -5.17916 -0.41622 0.07797 1.46578 1.49910 1.55552 1.61233 1.82560 2.00476 2.58086 2.72757 3.03943 3.42479 3.45749 3.51463 3.68053 3.75697 3.77007 3.86399 3.89100 3.94381 3.98348 4.13336 4.20072 4.40401 4.48679 4.58945 4.61704 4.66789 4.68349 4.72206 4.77495 4.80313 4.82830 4.87764 4.89810 4.91082 5.01268 5.04256 5.12152 5.14812 5.21986 5.24358 5.28608 5.30234 5.39608 5.44073 5.55327 5.67556 6.12909 6.31527 6.43552 6.62601 7.01705 7.37217 8.15234 8.36777 9.33189 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.001948 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.028976 B =14371.676471 C =15215.418997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 C -0.147 4.147 4 O -0.302 6.302 5 C 0.116 3.884 6 C -0.170 4.170 7 C -0.071 4.071 8 C 0.017 3.983 9 C 0.572 3.428 10 O -0.586 6.586 11 N -0.601 5.601 12 C 0.122 3.878 13 C -0.116 4.116 14 C -0.091 4.091 15 H 0.076 0.924 16 C 0.179 3.821 17 H 0.047 0.953 18 C -0.152 4.152 19 N -0.738 5.738 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.299 1.299 27 H -0.276 1.276 28 C 0.124 3.876 29 N -0.418 5.418 30 C 0.071 3.929 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.174 0.826 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.034 0.966 46 H 0.041 0.959 47 H 0.370 0.630 48 H 0.248 0.752 49 H 0.041 0.959 50 H 0.055 0.945 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 34.728 2.883 35.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 C -0.204 4.204 4 O -0.214 6.214 5 C 0.067 3.933 6 C -0.196 4.196 7 C -0.092 4.092 8 C -0.119 4.119 9 C 0.361 3.639 10 O -0.467 6.467 11 N -0.332 5.332 12 C 0.001 3.999 13 C -0.154 4.154 14 C -0.111 4.111 15 H 0.094 0.906 16 C 0.071 3.929 17 H 0.065 0.935 18 C -0.211 4.211 19 N -0.377 5.377 20 C -0.364 4.364 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.799 3.201 25 H -0.207 1.207 26 H -0.226 1.226 27 H -0.202 1.202 28 C 0.001 3.999 29 N -0.130 5.130 30 C -0.092 4.092 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.191 0.809 39 H 0.163 0.837 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.201 0.799 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.732 33.957 3.266 34.592 hybrid contribution -0.624 -1.232 -1.649 2.150 sum -6.355 32.726 1.617 33.376 Atomic orbital electron populations 1.22406 0.93972 1.03042 1.04397 1.22887 0.95234 0.94608 0.86465 1.21894 1.02136 0.92128 1.04244 1.86141 1.80044 1.14695 1.40524 1.20496 0.93427 0.84532 0.94889 1.21938 1.04039 0.93699 0.99918 1.21975 0.94324 0.94856 0.98088 1.20588 1.05003 0.92529 0.93764 1.18004 0.77575 0.86908 0.81430 1.90775 1.52666 1.68114 1.35171 1.48540 1.58319 1.08183 1.18120 1.22274 0.99666 0.95027 0.82943 1.22816 1.03132 0.92793 0.96664 1.22479 0.96885 0.95830 0.95918 0.90595 1.20426 0.97054 0.85791 0.89651 0.93515 1.22260 0.98772 1.00997 0.99115 1.42648 1.68226 1.08186 1.18681 1.19578 1.27543 0.88595 1.00685 0.90510 1.25535 1.02918 1.02066 0.96731 1.69825 1.49984 1.33668 1.08811 0.85263 0.78176 0.80137 0.76527 1.20717 1.22583 1.20185 1.22035 0.98605 0.79812 0.99422 1.67791 1.13334 1.08255 1.23604 1.22763 0.99231 0.88120 0.99093 0.92578 0.91425 0.88795 0.89737 0.91734 0.88394 0.91346 0.80906 0.83722 0.89740 0.89788 0.89460 0.87024 0.90069 0.94667 0.94009 0.79912 0.94336 0.94005 0.92633 0.78587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.19 71.98 0.66 -0.44 16 2 C 0.06 0.47 2.85 30.59 0.09 0.55 16 3 C -0.15 -0.67 9.56 71.98 0.69 0.02 16 4 O -0.30 -3.76 9.80 -90.33 -0.89 -4.65 16 5 C 0.12 1.76 6.63 22.75 0.15 1.91 16 6 C -0.17 -2.64 8.34 22.53 0.19 -2.45 16 7 C -0.07 -1.61 9.62 22.59 0.22 -1.40 16 8 C 0.02 0.47 6.72 41.86 0.28 0.75 16 9 C 0.57 20.48 7.83 86.81 0.68 21.16 16 10 O -0.59 -25.72 16.57 -3.86 -0.06 -25.78 16 11 N -0.60 -20.04 3.33 -814.72 -2.72 -22.75 16 12 C 0.12 2.95 5.40 86.70 0.47 3.42 16 13 C -0.12 -2.60 5.59 31.79 0.18 -2.43 16 14 C -0.09 -2.96 2.62 -9.41 -0.02 -2.98 16 15 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 16 C 0.18 6.85 2.40 44.99 0.11 6.96 16 17 H 0.05 1.81 8.05 -2.39 -0.02 1.80 16 18 C -0.15 -5.02 9.34 71.98 0.67 -4.35 16 19 N -0.74 -37.60 4.82 -322.94 -1.56 -39.16 16 20 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 23 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 24 Si 0.97 47.79 29.55 68.60 2.03 49.82 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 C 0.12 4.77 6.08 86.85 0.53 5.30 16 29 N -0.42 -9.33 6.84 -184.52 -1.26 -10.59 16 30 C 0.07 1.17 11.14 85.00 0.95 2.12 16 31 H 0.06 0.45 6.97 -2.38 -0.02 0.43 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.08 0.50 6.32 -2.39 -0.02 0.48 16 35 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.17 1.63 5.59 -2.91 -0.02 1.62 16 39 H 0.14 3.37 7.63 -2.91 -0.02 3.34 16 40 H 0.08 1.86 7.52 -2.39 -0.02 1.84 16 41 H 0.08 1.87 7.43 -2.39 -0.02 1.86 16 42 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 43 H 0.11 1.89 8.13 -2.39 -0.02 1.87 16 44 H 0.08 2.00 7.50 -2.38 -0.02 1.98 16 45 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.37 20.70 7.80 -92.71 -0.72 19.98 16 48 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 50 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 51 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -77.00 410.39 3.17 -73.83 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.21 Total: 29.32 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 7.13 Total: 11.56 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -5.25 Total: -134.11 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.95 Total: -30.43 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -77.00 3.17 -73.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569828430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.224 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds