Wall clock time and date at job start Wed Apr 1 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.46496 * 119.99619 * 89.99960 * 5 4 2 7 7 C 1.34774 * 120.00261 * 270.00136 * 5 4 2 8 8 O 1.21291 * 119.99579 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00055 * 180.02562 * 7 5 4 10 10 H 1.08995 * 109.46788 * 299.99564 * 9 7 5 11 11 C 1.52997 * 109.47343 * 59.99804 * 9 7 5 12 12 C 1.50695 * 109.46853 * 179.97438 * 9 7 5 13 13 C 1.38237 * 120.00215 * 299.72044 * 12 9 7 14 14 C 1.38240 * 120.00329 * 179.81000 * 13 12 9 15 15 C 1.38236 * 119.99724 * 0.40155 * 14 13 12 16 16 C 1.38238 * 120.00001 * 359.85400 * 15 14 13 17 17 C 1.38231 * 119.99946 * 359.95895 * 16 15 14 18 18 N 1.46905 * 109.46799 * 240.00580 * 2 1 3 19 19 C 1.46898 * 111.00329 * 85.00053 * 18 2 1 20 20 C 1.50695 * 109.46941 * 179.97438 * 19 18 2 21 21 O 1.21290 * 120.00593 * 359.97438 * 20 19 18 22 22 N 1.34786 * 119.99809 * 179.97438 * 20 19 18 23 23 C 1.37091 * 119.99856 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00173 * 0.02562 * 23 22 20 25 25 C 1.38956 * 120.00065 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99753 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00139 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47448 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47146 * 120.00394 * 27 25 23 30 30 H 1.48498 * 109.47184 * 240.00451 * 27 25 23 31 31 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 33 33 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 34 34 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 35 35 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 36 36 H 1.09004 * 109.47335 * 90.00404 * 6 5 4 37 37 H 1.09006 * 109.47349 * 209.99918 * 6 5 4 38 38 H 1.09003 * 109.47665 * 330.00083 * 6 5 4 39 39 H 1.08996 * 109.46873 * 180.02562 * 11 9 7 40 40 H 1.09002 * 109.46849 * 300.00165 * 11 9 7 41 41 H 1.08993 * 109.46995 * 59.99751 * 11 9 7 42 42 H 1.08001 * 119.99642 * 0.02562 * 13 12 9 43 43 H 1.08000 * 120.00014 * 180.23126 * 14 13 12 44 44 H 1.07992 * 119.99756 * 179.82894 * 15 14 13 45 45 H 1.08000 * 120.00016 * 179.97438 * 16 15 14 46 46 H 1.08000 * 120.00070 * 180.02562 * 17 16 15 47 47 H 1.00900 * 110.99586 * 208.95683 * 18 2 1 48 48 H 1.09003 * 109.46664 * 299.99985 * 19 18 2 49 49 H 1.09002 * 109.47064 * 59.99547 * 19 18 2 50 50 H 0.96995 * 119.99647 * 359.97438 * 22 20 19 51 51 H 0.96996 * 119.99826 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.3343 0.2339 1.7611 7 6 4.0758 -1.8987 0.6113 8 8 3.3850 -2.7764 0.1384 9 6 5.5776 -2.0071 0.5514 10 1 5.9811 -1.1600 -0.0032 11 6 6.1463 -2.0043 1.9718 12 6 5.9614 -3.2897 -0.1403 13 6 5.5644 -4.5046 0.3863 14 6 5.9131 -5.6811 -0.2503 15 6 6.6659 -5.6430 -1.4091 16 6 7.0674 -4.4283 -1.9329 17 6 6.7154 -3.2518 -1.2983 18 7 2.0195 -0.6924 -1.1996 19 6 2.0823 0.2227 -2.3470 20 6 2.5883 -0.5214 -3.5558 21 8 2.8694 -1.6981 -3.4699 22 7 2.7285 0.1208 -4.7325 23 6 3.1892 -0.5560 -5.8321 24 1 3.4396 -1.6037 -5.7555 25 6 3.3332 0.1059 -7.0454 26 7 3.0282 1.3807 -7.1386 27 14 3.9618 -0.8160 -8.5434 28 1 4.2322 -2.2296 -8.1773 29 1 2.9379 -0.7707 -9.6181 30 1 5.2143 -0.1809 -9.0260 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -1.7199 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 4.5426 0.0091 2.8072 37 1 5.2722 0.2952 1.2090 38 1 3.8091 1.1865 1.6918 39 1 7.2326 -2.0823 1.9284 40 1 5.8686 -1.0768 2.4725 41 1 5.7427 -2.8514 2.5263 42 1 4.9788 -4.5345 1.2933 43 1 5.5998 -6.6301 0.1591 44 1 6.9407 -6.5622 -1.9050 45 1 7.6559 -4.3985 -2.8380 46 1 7.0287 -2.3028 -1.7077 47 1 2.9171 -1.1205 -1.0289 48 1 1.0869 0.6165 -2.5525 49 1 2.7587 1.0463 -2.1182 50 1 2.5033 1.0618 -4.8013 51 1 3.1290 1.8428 -7.9854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571412609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:59 Heat of formation + Delta-G solvation = -33.298868 kcal Electronic energy + Delta-G solvation = -31812.369901 eV Core-core repulsion = 27712.079174 eV Total energy + Delta-G solvation = -4100.290727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.68575 -38.88782 -38.10681 -36.58737 -35.21554 -34.03602 -33.69491 -31.24671 -30.80694 -30.72205 -29.38808 -27.52101 -26.45570 -26.18188 -24.31681 -23.82433 -22.42641 -21.60319 -20.26368 -19.33929 -18.99427 -17.81571 -17.08795 -16.81267 -16.49735 -16.22254 -15.46401 -15.14436 -15.04674 -14.76486 -14.47324 -14.38487 -14.06103 -13.78835 -13.71690 -13.40140 -13.25111 -13.14347 -12.83696 -12.74871 -12.59125 -12.40743 -12.15226 -12.00927 -11.82221 -11.76395 -11.66709 -11.54076 -11.44044 -11.28136 -11.06298 -10.85625 -10.81930 -10.79011 -10.29059 -10.14911 -9.60475 -9.43581 -8.74437 -8.66495 -8.55542 -8.28577 -7.89673 -7.83437 -6.34454 -3.74299 1.50191 1.63501 2.67794 2.89079 3.20789 3.30627 3.38990 3.96085 4.01556 4.18010 4.38647 4.44953 4.58219 4.78372 4.89278 4.92921 5.00428 5.11137 5.14738 5.17131 5.22417 5.27616 5.30101 5.31699 5.35251 5.41501 5.47288 5.52523 5.54586 5.70272 5.76647 5.80407 5.82640 5.88269 5.91991 6.07884 6.09963 6.14073 6.21930 6.28356 6.39333 6.49885 6.63659 6.69895 6.75331 7.16148 7.27188 7.43959 7.62745 7.90861 8.15671 8.23495 8.71290 9.26914 9.63672 10.16970 10.83830 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.003921 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.809119 B = 7139.756455 C = 9665.893517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.038 0.962 4 C 0.114 3.886 5 N -0.626 5.626 6 C 0.075 3.925 7 C 0.509 3.491 8 O -0.491 6.491 9 C -0.069 4.069 10 H 0.102 0.898 11 C -0.151 4.151 12 C -0.067 4.067 13 C -0.085 4.085 14 C -0.125 4.125 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.103 4.103 18 N -0.658 5.658 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.571 6.571 22 N -0.569 5.569 23 C -0.294 4.294 24 H 0.102 0.898 25 C 0.020 3.980 26 N -0.905 5.905 27 Si 0.927 3.073 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.354 0.646 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.391 0.609 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -1.135 21.762 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.009 4.009 5 N -0.362 5.362 6 C -0.068 4.068 7 C 0.296 3.704 8 O -0.362 6.362 9 C -0.091 4.091 10 H 0.120 0.880 11 C -0.208 4.208 12 C -0.067 4.067 13 C -0.103 4.103 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.137 4.137 17 C -0.121 4.121 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.453 6.453 22 N -0.206 5.206 23 C -0.423 4.423 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.547 5.547 27 Si 0.754 3.246 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.179 0.821 48 H 0.101 0.899 49 H 0.053 0.947 50 H 0.224 0.776 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.915 -2.587 21.241 21.955 hybrid contribution 0.801 1.067 -0.839 1.576 sum 5.716 -1.520 20.402 21.242 Atomic orbital electron populations 1.21742 0.94143 1.02671 1.01056 1.21927 0.96342 0.95631 0.90622 0.94373 1.21731 0.79105 1.02945 0.97134 1.47909 1.06814 1.21648 1.59864 1.21975 0.95762 0.90673 0.98412 1.20598 0.90403 0.81683 0.77703 1.90862 1.64083 1.38273 1.43011 1.20253 0.92572 0.97787 0.98457 0.88025 1.22052 1.01740 1.03209 0.93789 1.19189 0.98516 0.93256 0.95767 1.20791 0.97935 0.91844 0.99771 1.21041 0.99011 0.97932 0.96274 1.21106 0.98589 0.97786 0.96257 1.21074 1.00536 0.92471 0.99574 1.21002 0.98085 0.98536 0.94472 1.60189 1.36256 1.31040 1.02161 1.21731 1.00852 0.93846 0.91889 1.19873 0.84771 0.88317 0.84434 1.90580 1.54303 1.15875 1.84574 1.41865 1.58392 1.12373 1.07983 1.19749 1.39355 0.96426 0.86808 0.87981 1.25225 0.97932 0.95776 0.99113 1.69623 1.49269 1.08881 1.26918 0.85833 0.78194 0.79682 0.80861 1.19231 1.20787 1.20843 0.91680 0.92939 0.92336 0.88897 0.90107 0.92132 0.90775 0.91152 0.91276 0.90885 0.91954 0.86735 0.86420 0.86399 0.86101 0.86236 0.82134 0.89858 0.94678 0.77637 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.41 37.15 0.35 -1.33 16 2 C 0.07 0.90 2.95 -67.71 -0.20 0.70 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 4 C 0.11 1.30 5.20 -4.04 -0.02 1.28 16 5 N -0.63 -7.09 2.66 -181.57 -0.48 -7.57 16 6 C 0.07 0.54 8.80 59.84 0.53 1.07 16 7 C 0.51 7.32 5.32 -10.99 -0.06 7.26 16 8 O -0.49 -9.35 13.29 5.55 0.07 -9.28 16 9 C -0.07 -0.83 2.10 -92.93 -0.20 -1.02 16 10 H 0.10 1.13 7.14 -51.93 -0.37 0.76 16 11 C -0.15 -1.24 8.64 37.16 0.32 -0.92 16 12 C -0.07 -0.96 4.39 -104.62 -0.46 -1.42 16 13 C -0.09 -1.21 7.94 -39.58 -0.31 -1.52 16 14 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 15 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 16 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 17 C -0.10 -1.53 9.67 -39.58 -0.38 -1.92 16 18 N -0.66 -12.38 5.82 -108.00 -0.63 -13.01 16 19 C 0.05 0.98 5.97 -4.98 -0.03 0.95 16 20 C 0.44 11.28 7.82 -10.98 -0.09 11.20 16 21 O -0.57 -16.93 15.78 5.55 0.09 -16.84 16 22 N -0.57 -15.17 5.29 -10.96 -0.06 -15.23 16 23 C -0.29 -8.54 9.68 -14.93 -0.14 -8.68 16 24 H 0.10 3.15 7.16 -52.49 -0.38 2.77 16 25 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -25.30 13.05 55.50 0.72 -24.58 16 27 Si 0.93 21.76 29.55 -169.99 -5.02 16.73 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 34 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.06 0.32 6.95 -51.93 -0.36 -0.04 16 37 H 0.07 0.50 6.01 -51.93 -0.31 0.19 16 38 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.45 4.53 -51.93 -0.24 0.21 16 41 H 0.06 0.53 7.37 -51.93 -0.38 0.15 16 42 H 0.11 1.51 7.51 -52.49 -0.39 1.12 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.12 1.65 7.95 -52.49 -0.42 1.23 16 47 H 0.35 7.18 4.17 -39.29 -0.16 7.01 16 48 H 0.08 1.52 7.44 -51.93 -0.39 1.14 16 49 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 50 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 51 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -36.68 408.19 -8.97 -45.64 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -7.83 Total: 18.06 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.98 Total: -0.07 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.45 Total: -60.39 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.16 Total: -26.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.68 -8.97 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.346 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds