Wall clock time and date at job start Wed Apr 1 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.46496 * 119.99619 * 89.99960 * 5 4 2 7 7 C 1.34774 * 120.00261 * 270.00136 * 5 4 2 8 8 O 1.21291 * 119.99579 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00055 * 180.02562 * 7 5 4 10 10 H 1.08995 * 109.46788 * 299.99564 * 9 7 5 11 11 C 1.52997 * 109.47343 * 59.99804 * 9 7 5 12 12 C 1.50695 * 109.46853 * 179.97438 * 9 7 5 13 13 C 1.38237 * 120.00215 * 299.72044 * 12 9 7 14 14 C 1.38240 * 120.00329 * 179.81000 * 13 12 9 15 15 C 1.38236 * 119.99724 * 0.40155 * 14 13 12 16 16 C 1.38238 * 120.00001 * 359.85400 * 15 14 13 17 17 C 1.38231 * 119.99946 * 359.95895 * 16 15 14 18 18 N 1.46905 * 109.46799 * 240.00580 * 2 1 3 19 19 C 1.46898 * 111.00329 * 85.00053 * 18 2 1 20 20 C 1.50695 * 109.46941 * 179.97438 * 19 18 2 21 21 O 1.21290 * 120.00593 * 359.97438 * 20 19 18 22 22 N 1.34786 * 119.99809 * 179.97438 * 20 19 18 23 23 C 1.37091 * 119.99856 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00173 * 0.02562 * 23 22 20 25 25 C 1.38956 * 120.00065 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99753 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00139 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47448 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47146 * 120.00394 * 27 25 23 30 30 H 1.48498 * 109.47184 * 240.00451 * 27 25 23 31 31 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 33 33 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 34 34 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 35 35 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 36 36 H 1.09004 * 109.47335 * 90.00404 * 6 5 4 37 37 H 1.09006 * 109.47349 * 209.99918 * 6 5 4 38 38 H 1.09003 * 109.47665 * 330.00083 * 6 5 4 39 39 H 1.08996 * 109.46873 * 180.02562 * 11 9 7 40 40 H 1.09002 * 109.46849 * 300.00165 * 11 9 7 41 41 H 1.08993 * 109.46995 * 59.99751 * 11 9 7 42 42 H 1.08001 * 119.99642 * 0.02562 * 13 12 9 43 43 H 1.08000 * 120.00014 * 180.23126 * 14 13 12 44 44 H 1.07992 * 119.99756 * 179.82894 * 15 14 13 45 45 H 1.08000 * 120.00016 * 179.97438 * 16 15 14 46 46 H 1.08000 * 120.00070 * 180.02562 * 17 16 15 47 47 H 1.00900 * 110.99586 * 208.95683 * 18 2 1 48 48 H 1.09003 * 109.46664 * 299.99985 * 19 18 2 49 49 H 1.09002 * 109.47064 * 59.99547 * 19 18 2 50 50 H 0.96995 * 119.99647 * 359.97438 * 22 20 19 51 51 H 0.96996 * 119.99826 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.3343 0.2339 1.7611 7 6 4.0758 -1.8987 0.6113 8 8 3.3850 -2.7764 0.1384 9 6 5.5776 -2.0071 0.5514 10 1 5.9811 -1.1600 -0.0032 11 6 6.1463 -2.0043 1.9718 12 6 5.9614 -3.2897 -0.1403 13 6 5.5644 -4.5046 0.3863 14 6 5.9131 -5.6811 -0.2503 15 6 6.6659 -5.6430 -1.4091 16 6 7.0674 -4.4283 -1.9329 17 6 6.7154 -3.2518 -1.2983 18 7 2.0195 -0.6924 -1.1996 19 6 2.0823 0.2227 -2.3470 20 6 2.5883 -0.5214 -3.5558 21 8 2.8694 -1.6981 -3.4699 22 7 2.7285 0.1208 -4.7325 23 6 3.1892 -0.5560 -5.8321 24 1 3.4396 -1.6037 -5.7555 25 6 3.3332 0.1059 -7.0454 26 7 3.0282 1.3807 -7.1386 27 14 3.9618 -0.8160 -8.5434 28 1 4.2322 -2.2296 -8.1773 29 1 2.9379 -0.7707 -9.6181 30 1 5.2143 -0.1809 -9.0260 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -1.7199 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 4.5426 0.0091 2.8072 37 1 5.2722 0.2952 1.2090 38 1 3.8091 1.1865 1.6918 39 1 7.2326 -2.0823 1.9284 40 1 5.8686 -1.0768 2.4725 41 1 5.7427 -2.8514 2.5263 42 1 4.9788 -4.5345 1.2933 43 1 5.5998 -6.6301 0.1591 44 1 6.9407 -6.5622 -1.9050 45 1 7.6559 -4.3985 -2.8380 46 1 7.0287 -2.3028 -1.7077 47 1 2.9171 -1.1205 -1.0289 48 1 1.0869 0.6165 -2.5525 49 1 2.7587 1.0463 -2.1182 50 1 2.5033 1.0618 -4.8013 51 1 3.1290 1.8428 -7.9854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571412609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:58 Heat of formation + Delta-G solvation = -58.764303 kcal Electronic energy + Delta-G solvation = -31813.474165 eV Core-core repulsion = 27712.079174 eV Total energy + Delta-G solvation = -4101.394991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70073 -40.23903 -39.76692 -37.82627 -36.32312 -35.91228 -34.91601 -33.31199 -32.17521 -31.79380 -30.35102 -28.33863 -27.97436 -27.27185 -25.80643 -25.07694 -23.49843 -22.65470 -21.33878 -21.16534 -20.13318 -19.90374 -18.17628 -17.90718 -17.79816 -17.37631 -16.99213 -16.53094 -16.27912 -16.21863 -15.88725 -15.70430 -15.54701 -14.99569 -14.92036 -14.62640 -14.25051 -14.19375 -14.15072 -13.86989 -13.66966 -13.50781 -13.44139 -13.34482 -13.11904 -12.97217 -12.90993 -12.66095 -12.62229 -12.46153 -12.39463 -12.34632 -12.14240 -11.96346 -11.85549 -11.77139 -11.54067 -10.67522 -10.35892 -10.03464 -9.78300 -9.64565 -9.59342 -9.25040 -8.49103 -5.97615 0.43466 0.53003 1.33368 1.38257 1.53049 1.64639 2.01256 2.02787 2.27225 2.89717 2.94925 3.17360 3.49286 3.50753 3.68433 3.92681 3.95528 4.09769 4.18559 4.20984 4.22195 4.26658 4.27764 4.33451 4.39703 4.45284 4.51673 4.55162 4.60219 4.67245 4.68897 4.78266 4.86228 4.91617 4.94768 4.96535 5.07627 5.11866 5.14837 5.25528 5.37131 5.38772 5.55400 5.60393 5.61486 5.67739 5.91097 6.12048 6.17735 6.35078 6.50874 6.58814 7.10901 7.22611 7.52909 8.10480 8.68775 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.003921 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.809119 B = 7139.756455 C = 9665.893517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.116 3.884 5 N -0.620 5.620 6 C 0.064 3.936 7 C 0.503 3.497 8 O -0.550 6.550 9 C -0.068 4.068 10 H 0.107 0.893 11 C -0.141 4.141 12 C -0.078 4.078 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.130 4.130 16 C -0.136 4.136 17 C -0.130 4.130 18 N -0.683 5.683 19 C 0.065 3.935 20 C 0.433 3.567 21 O -0.619 6.619 22 N -0.572 5.572 23 C -0.332 4.332 24 H 0.072 0.928 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.277 1.277 29 H -0.269 1.269 30 H -0.266 1.266 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.344 0.656 48 H 0.100 0.900 49 H 0.060 0.940 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 0.803 23.222 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.077 0.923 4 C -0.007 4.007 5 N -0.354 5.354 6 C -0.078 4.078 7 C 0.291 3.709 8 O -0.426 6.426 9 C -0.089 4.089 10 H 0.125 0.875 11 C -0.198 4.198 12 C -0.078 4.078 13 C -0.117 4.117 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.148 4.148 18 N -0.322 5.322 19 C -0.068 4.068 20 C 0.221 3.779 21 O -0.505 6.505 22 N -0.210 5.210 23 C -0.462 4.462 24 H 0.091 0.909 25 C -0.210 4.210 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.202 1.202 29 H -0.194 1.194 30 H -0.191 1.191 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.168 0.832 48 H 0.118 0.882 49 H 0.077 0.923 50 H 0.230 0.770 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.144 -0.559 22.737 23.318 hybrid contribution 0.684 0.511 -1.271 1.531 sum 5.828 -0.048 21.466 22.243 Atomic orbital electron populations 1.21733 0.93228 1.01822 1.02432 1.22135 0.97013 0.96325 0.89239 0.92295 1.21772 0.79127 1.01965 0.97841 1.47988 1.07222 1.21545 1.58661 1.22323 0.95585 0.90075 0.99789 1.21017 0.91088 0.81727 0.77030 1.90830 1.65358 1.40676 1.45784 1.20318 0.91334 0.96685 1.00576 0.87534 1.22038 1.02096 1.04408 0.91283 1.19523 0.97963 0.94614 0.95703 1.20986 0.98181 0.92250 1.00276 1.21406 0.98616 0.98807 0.96282 1.21423 0.98473 0.98423 0.96439 1.21368 1.00971 0.92881 1.00148 1.21235 0.99305 0.98960 0.95316 1.60204 1.36005 1.32073 1.03910 1.21580 1.01765 0.93650 0.89765 1.20940 0.83359 0.88059 0.85561 1.90549 1.56126 1.18277 1.85503 1.41901 1.58472 1.12483 1.08096 1.19641 1.42109 0.95762 0.88682 0.90948 1.26000 0.97200 0.96633 1.01146 1.69671 1.48621 1.09616 1.28101 0.84909 0.78412 0.77914 0.77320 1.20221 1.19392 1.19106 0.93663 0.89135 0.93327 0.91606 0.85567 0.89288 0.90317 0.89316 0.90270 0.88229 0.92402 0.86303 0.84232 0.84110 0.85062 0.86148 0.83220 0.88183 0.92253 0.77022 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.41 71.98 0.68 -2.34 16 2 C 0.06 1.58 2.95 44.91 0.13 1.72 16 3 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 4 C 0.12 2.41 5.20 86.38 0.45 2.86 16 5 N -0.62 -12.88 2.66 -846.74 -2.25 -15.13 16 6 C 0.06 0.68 8.80 127.77 1.12 1.81 16 7 C 0.50 14.52 5.32 87.66 0.47 14.98 16 8 O -0.55 -21.98 13.29 -3.06 -0.04 -22.02 16 9 C -0.07 -1.62 2.10 -12.29 -0.03 -1.64 16 10 H 0.11 2.36 7.14 -2.39 -0.02 2.35 16 11 C -0.14 -2.09 8.64 71.98 0.62 -1.47 16 12 C -0.08 -2.32 4.39 -19.87 -0.09 -2.41 16 13 C -0.10 -2.91 7.94 22.27 0.18 -2.74 16 14 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 15 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 16 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 17 C -0.13 -4.10 9.67 22.27 0.22 -3.89 16 18 N -0.68 -25.72 5.82 -495.59 -2.88 -28.61 16 19 C 0.06 2.54 5.97 85.56 0.51 3.05 16 20 C 0.43 22.84 7.82 87.65 0.69 23.53 16 21 O -0.62 -38.57 15.78 -3.06 -0.05 -38.61 16 22 N -0.57 -31.29 5.29 -306.98 -1.62 -32.91 16 23 C -0.33 -19.92 9.68 84.04 0.81 -19.11 16 24 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 25 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 26 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 27 Si 0.99 44.57 29.55 68.60 2.03 46.60 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.05 1.18 7.45 -2.39 -0.02 1.16 16 34 H 0.07 1.77 7.42 -2.39 -0.02 1.75 16 35 H 0.13 1.49 8.07 -2.39 -0.02 1.47 16 36 H 0.09 0.51 6.95 -2.39 -0.02 0.49 16 37 H 0.08 0.81 6.01 -2.38 -0.01 0.80 16 38 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.90 4.53 -2.39 -0.01 0.89 16 41 H 0.06 0.92 7.37 -2.39 -0.02 0.90 16 42 H 0.12 3.27 7.51 -2.91 -0.02 3.25 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.12 3.58 7.95 -2.91 -0.02 3.55 16 47 H 0.34 14.24 4.17 -89.69 -0.37 13.87 16 48 H 0.10 3.56 7.44 -2.39 -0.02 3.54 16 49 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 50 H 0.40 20.38 7.90 -92.71 -0.73 19.65 16 51 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -84.44 408.19 2.20 -82.24 By element: Atomic # 1 Polarization: 55.54 SS G_CDS: -0.16 Total: 55.39 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.90 Total: 3.58 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -6.48 Total: -127.18 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -0.09 Total: -60.63 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -84.44 2.20 -82.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.476 kcal (2) G-P(sol) polarization free energy of solvation -84.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds