Wall clock time and date at job start Wed Apr 1 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.46493 * 119.99899 * 270.00188 * 5 4 2 7 7 C 1.34773 * 119.99455 * 90.00023 * 5 4 2 8 8 O 1.21282 * 120.00692 * 0.02562 * 7 5 4 9 9 C 1.50705 * 119.99759 * 180.02562 * 7 5 4 10 10 H 1.09006 * 109.46606 * 299.99889 * 9 7 5 11 11 C 1.52994 * 109.47326 * 59.99497 * 9 7 5 12 12 C 1.50698 * 109.47452 * 180.02562 * 9 7 5 13 13 C 1.38235 * 119.99761 * 299.72633 * 12 9 7 14 14 C 1.38238 * 119.99992 * 179.80974 * 13 12 9 15 15 C 1.38237 * 119.99750 * 0.39689 * 14 13 12 16 16 C 1.38230 * 120.00077 * 359.85481 * 15 14 13 17 17 C 1.38234 * 120.00294 * 359.95856 * 16 15 14 18 18 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 19 19 C 1.46896 * 111.00168 * 275.00642 * 18 2 1 20 20 C 1.50702 * 109.47115 * 179.97438 * 19 18 2 21 21 O 1.21292 * 120.00118 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99961 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00164 * 180.02562 * 22 20 19 24 24 H 1.08004 * 119.99583 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00447 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99710 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00457 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46463 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47115 * 119.99325 * 27 25 23 30 30 H 1.48492 * 109.47216 * 239.99867 * 27 25 23 31 31 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 32 32 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 33 33 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 35 35 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 36 36 H 1.08994 * 109.47405 * 90.00269 * 6 5 4 37 37 H 1.09006 * 109.46911 * 209.99921 * 6 5 4 38 38 H 1.08996 * 109.47170 * 329.99434 * 6 5 4 39 39 H 1.09006 * 109.46958 * 60.00607 * 11 9 7 40 40 H 1.08996 * 109.47474 * 180.02562 * 11 9 7 41 41 H 1.09001 * 109.47715 * 300.00631 * 11 9 7 42 42 H 1.07997 * 120.00103 * 359.97438 * 13 12 9 43 43 H 1.07998 * 119.99921 * 180.22592 * 14 13 12 44 44 H 1.07997 * 120.00006 * 179.83765 * 15 14 13 45 45 H 1.08005 * 120.00084 * 179.97438 * 16 15 14 46 46 H 1.08003 * 120.00662 * 180.02562 * 17 16 15 47 47 H 1.00897 * 110.99919 * 151.04710 * 18 2 1 48 48 H 1.09007 * 109.46974 * 299.99418 * 19 18 2 49 49 H 1.08997 * 109.47662 * 59.99422 * 19 18 2 50 50 H 0.97003 * 119.99961 * 359.97438 * 22 20 19 51 51 H 0.97003 * 120.00022 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0757 -1.8986 -0.6113 8 8 3.3851 -2.7768 -0.1393 9 6 5.5777 -2.0065 -0.5504 10 1 5.9834 -2.0040 -1.5621 11 6 6.1432 -0.8175 0.2288 12 6 5.9616 -3.2893 0.1411 13 6 5.5618 -3.5183 1.4444 14 6 5.9106 -4.6967 2.0774 15 6 6.6661 -5.6425 1.4099 16 6 7.0702 -5.4112 0.1083 17 6 6.7182 -4.2345 -0.5260 18 7 2.0197 -0.6924 1.1995 19 6 2.0823 0.2227 2.3469 20 6 2.5872 -0.5216 3.5561 21 8 2.8668 -1.6988 3.4706 22 7 2.7280 0.1207 4.7326 23 6 3.1878 -0.5563 5.8325 24 1 3.4368 -1.6045 5.7563 25 6 3.3325 0.1057 7.0455 26 7 3.0291 1.3810 7.1383 27 14 3.9583 -0.8169 8.5444 28 1 4.2260 -2.2311 8.1789 29 1 5.2120 -0.1841 9.0274 30 1 2.9340 -0.7690 9.6184 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2950 36 1 4.5400 0.9848 -0.9981 37 1 5.2735 -0.1925 -2.1135 38 1 3.8104 0.6987 -2.5963 39 1 5.7375 -0.8200 1.2405 40 1 7.2295 -0.8953 0.2725 41 1 5.8656 0.1102 -0.2717 42 1 4.9748 -2.7778 1.9672 43 1 5.5952 -4.8772 3.0945 44 1 6.9408 -6.5619 1.9052 45 1 7.6608 -6.1499 -0.4131 46 1 7.0336 -4.0539 -1.5430 47 1 2.9173 -1.1204 1.0289 48 1 2.7588 1.0463 2.1183 49 1 1.0870 0.6165 2.5525 50 1 2.5047 1.0622 4.8009 51 1 3.1304 1.8433 7.9850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571412610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:02 Heat of formation + Delta-G solvation = -34.189574 kcal Electronic energy + Delta-G solvation = -32116.772018 eV Core-core repulsion = 28016.442666 eV Total energy + Delta-G solvation = -4100.329351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.68915 -38.84987 -38.13153 -36.58612 -35.19066 -34.03992 -33.70652 -31.26861 -30.82671 -30.65091 -29.32937 -27.51647 -26.48178 -26.14713 -24.23640 -23.87013 -22.36557 -21.55955 -20.29236 -19.36560 -18.95629 -17.82871 -17.13868 -16.76361 -16.50547 -15.97925 -15.60955 -15.26065 -14.93052 -14.68574 -14.50532 -14.37431 -14.07242 -13.78018 -13.67061 -13.34705 -13.22389 -13.07135 -12.81887 -12.64278 -12.56373 -12.45462 -12.13901 -12.00253 -11.83311 -11.79000 -11.68296 -11.51378 -11.35513 -11.27083 -11.08092 -10.84596 -10.75767 -10.70732 -10.30988 -10.17438 -9.59553 -9.45874 -8.74504 -8.63837 -8.52729 -8.31501 -7.92148 -7.85566 -6.36789 -3.76879 1.51836 1.67891 2.66366 2.90394 3.19327 3.29509 3.37133 3.98224 4.00196 4.16056 4.38852 4.48461 4.59220 4.77468 4.90708 4.95259 5.06777 5.10984 5.14853 5.21596 5.22761 5.29712 5.29952 5.35349 5.38642 5.41876 5.48860 5.61226 5.66318 5.75484 5.79551 5.81139 5.86645 5.89536 6.06504 6.09377 6.12600 6.19187 6.27745 6.31899 6.37528 6.49453 6.63880 6.81448 6.87841 7.20642 7.29170 7.42118 7.60229 7.89720 8.12858 8.23012 8.68204 9.24088 9.60895 10.13462 10.81317 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.004104 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.590318 B = 6821.717630 C = 9339.233126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.039 0.961 4 C 0.113 3.887 5 N -0.626 5.626 6 C 0.075 3.925 7 C 0.508 3.492 8 O -0.492 6.492 9 C -0.065 4.065 10 H 0.099 0.901 11 C -0.158 4.158 12 C -0.075 4.075 13 C -0.071 4.071 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.132 4.132 17 C -0.117 4.117 18 N -0.658 5.658 19 C 0.049 3.951 20 C 0.441 3.559 21 O -0.573 6.573 22 N -0.567 5.567 23 C -0.294 4.294 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.904 5.904 27 Si 0.927 3.073 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.354 0.646 48 H 0.035 0.965 49 H 0.083 0.917 50 H 0.391 0.609 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -0.564 -20.613 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.057 0.943 4 C -0.010 4.010 5 N -0.362 5.362 6 C -0.068 4.068 7 C 0.296 3.704 8 O -0.364 6.364 9 C -0.087 4.087 10 H 0.117 0.883 11 C -0.215 4.215 12 C -0.075 4.075 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.135 4.135 18 N -0.296 5.296 19 C -0.084 4.084 20 C 0.227 3.773 21 O -0.456 6.456 22 N -0.204 5.204 23 C -0.424 4.424 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.546 5.546 27 Si 0.754 3.246 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.178 0.822 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.224 0.776 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.627 -2.011 -20.088 20.712 hybrid contribution 0.851 0.992 0.665 1.466 sum 5.478 -1.019 -19.423 20.206 Atomic orbital electron populations 1.21745 0.94158 1.02667 1.01056 1.21923 0.96320 0.95655 0.90590 0.94327 1.21758 0.79098 1.02920 0.97191 1.47908 1.06819 1.21641 1.59848 1.21983 0.95617 0.90736 0.98443 1.20642 0.90485 0.81501 0.77805 1.90856 1.64137 1.38162 1.43218 1.20231 0.92379 0.95210 1.00831 0.88274 1.22108 1.01925 0.96110 1.01330 1.19258 0.99022 0.94592 0.94643 1.21193 0.96266 0.97604 0.93803 1.21225 0.97799 0.93918 1.00407 1.21139 0.98628 0.99158 0.94987 1.20964 1.01372 0.97274 0.95352 1.20880 0.99304 0.94095 0.99203 1.60192 1.36187 1.31068 1.02169 1.21742 1.00897 0.93882 0.91895 1.19846 0.84804 0.88289 0.84402 1.90546 1.54636 1.15824 1.84634 1.41872 1.58228 1.12341 1.07988 1.19738 1.39497 0.96384 0.86790 0.87939 1.25230 0.97863 0.95765 0.99138 1.69626 1.49124 1.08855 1.26963 0.85837 0.78198 0.79675 0.80877 1.19227 1.20834 1.20796 0.92337 0.92947 0.91682 0.90118 0.88920 0.92285 0.90717 0.91099 0.91264 0.91132 0.91000 0.85023 0.85850 0.86490 0.86550 0.86703 0.82161 0.94672 0.89876 0.77627 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.41 37.16 0.35 -1.31 16 2 C 0.07 0.89 2.95 -67.71 -0.20 0.69 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 4 C 0.11 1.30 5.24 -4.04 -0.02 1.27 16 5 N -0.63 -7.09 2.66 -181.57 -0.48 -7.57 16 6 C 0.08 0.55 8.85 59.84 0.53 1.08 16 7 C 0.51 7.31 5.32 -10.98 -0.06 7.25 16 8 O -0.49 -9.34 13.29 5.56 0.07 -9.27 16 9 C -0.07 -0.78 2.10 -92.93 -0.19 -0.98 16 10 H 0.10 0.89 7.13 -51.93 -0.37 0.52 16 11 C -0.16 -1.76 8.64 37.15 0.32 -1.44 16 12 C -0.07 -1.08 4.39 -104.62 -0.46 -1.54 16 13 C -0.07 -1.23 7.94 -39.58 -0.31 -1.54 16 14 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 15 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 16 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 17 C -0.12 -1.47 9.67 -39.58 -0.38 -1.85 16 18 N -0.66 -11.98 5.82 -107.99 -0.63 -12.60 16 19 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 20 C 0.44 10.86 7.82 -10.99 -0.09 10.77 16 21 O -0.57 -16.09 15.78 5.55 0.09 -16.00 16 22 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 23 C -0.29 -8.35 9.68 -14.93 -0.14 -8.49 16 24 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 27 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 35 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.06 0.43 6.95 -51.93 -0.36 0.07 16 37 H 0.07 0.43 6.01 -51.93 -0.31 0.12 16 38 H 0.07 0.37 7.89 -51.93 -0.41 -0.04 16 39 H 0.07 1.00 7.38 -51.93 -0.38 0.62 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.63 4.53 -51.93 -0.24 0.40 16 42 H 0.13 2.71 7.52 -52.49 -0.39 2.32 16 43 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 46 H 0.11 1.12 7.95 -52.48 -0.42 0.70 16 47 H 0.35 6.84 4.17 -39.29 -0.16 6.68 16 48 H 0.04 0.61 8.06 -51.92 -0.42 0.19 16 49 H 0.08 1.48 7.44 -51.93 -0.39 1.10 16 50 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 51 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 407.94 15.07 6.15 6.15 Total: -1.00 -34.89 407.94 -8.95 -43.84 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -7.81 Total: 19.07 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.98 Total: -1.05 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.45 Total: -59.16 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.16 Total: -25.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.89 -8.95 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.652 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds