Wall clock time and date at job start Wed Apr 1 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.46493 * 119.99899 * 270.00188 * 5 4 2 7 7 C 1.34773 * 119.99455 * 90.00023 * 5 4 2 8 8 O 1.21282 * 120.00692 * 0.02562 * 7 5 4 9 9 C 1.50705 * 119.99759 * 180.02562 * 7 5 4 10 10 H 1.09006 * 109.46606 * 299.99889 * 9 7 5 11 11 C 1.52994 * 109.47326 * 59.99497 * 9 7 5 12 12 C 1.50698 * 109.47452 * 180.02562 * 9 7 5 13 13 C 1.38235 * 119.99761 * 299.72633 * 12 9 7 14 14 C 1.38238 * 119.99992 * 179.80974 * 13 12 9 15 15 C 1.38237 * 119.99750 * 0.39689 * 14 13 12 16 16 C 1.38230 * 120.00077 * 359.85481 * 15 14 13 17 17 C 1.38234 * 120.00294 * 359.95856 * 16 15 14 18 18 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 19 19 C 1.46896 * 111.00168 * 275.00642 * 18 2 1 20 20 C 1.50702 * 109.47115 * 179.97438 * 19 18 2 21 21 O 1.21292 * 120.00118 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99961 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00164 * 180.02562 * 22 20 19 24 24 H 1.08004 * 119.99583 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00447 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99710 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00457 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46463 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47115 * 119.99325 * 27 25 23 30 30 H 1.48492 * 109.47216 * 239.99867 * 27 25 23 31 31 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 32 32 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 33 33 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 35 35 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 36 36 H 1.08994 * 109.47405 * 90.00269 * 6 5 4 37 37 H 1.09006 * 109.46911 * 209.99921 * 6 5 4 38 38 H 1.08996 * 109.47170 * 329.99434 * 6 5 4 39 39 H 1.09006 * 109.46958 * 60.00607 * 11 9 7 40 40 H 1.08996 * 109.47474 * 180.02562 * 11 9 7 41 41 H 1.09001 * 109.47715 * 300.00631 * 11 9 7 42 42 H 1.07997 * 120.00103 * 359.97438 * 13 12 9 43 43 H 1.07998 * 119.99921 * 180.22592 * 14 13 12 44 44 H 1.07997 * 120.00006 * 179.83765 * 15 14 13 45 45 H 1.08005 * 120.00084 * 179.97438 * 16 15 14 46 46 H 1.08003 * 120.00662 * 180.02562 * 17 16 15 47 47 H 1.00897 * 110.99919 * 151.04710 * 18 2 1 48 48 H 1.09007 * 109.46974 * 299.99418 * 19 18 2 49 49 H 1.08997 * 109.47662 * 59.99422 * 19 18 2 50 50 H 0.97003 * 119.99961 * 359.97438 * 22 20 19 51 51 H 0.97003 * 120.00022 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0757 -1.8986 -0.6113 8 8 3.3851 -2.7768 -0.1393 9 6 5.5777 -2.0065 -0.5504 10 1 5.9834 -2.0040 -1.5621 11 6 6.1432 -0.8175 0.2288 12 6 5.9616 -3.2893 0.1411 13 6 5.5618 -3.5183 1.4444 14 6 5.9106 -4.6967 2.0774 15 6 6.6661 -5.6425 1.4099 16 6 7.0702 -5.4112 0.1083 17 6 6.7182 -4.2345 -0.5260 18 7 2.0197 -0.6924 1.1995 19 6 2.0823 0.2227 2.3469 20 6 2.5872 -0.5216 3.5561 21 8 2.8668 -1.6988 3.4706 22 7 2.7280 0.1207 4.7326 23 6 3.1878 -0.5563 5.8325 24 1 3.4368 -1.6045 5.7563 25 6 3.3325 0.1057 7.0455 26 7 3.0291 1.3810 7.1383 27 14 3.9583 -0.8169 8.5444 28 1 4.2260 -2.2311 8.1789 29 1 5.2120 -0.1841 9.0274 30 1 2.9340 -0.7690 9.6184 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2950 36 1 4.5400 0.9848 -0.9981 37 1 5.2735 -0.1925 -2.1135 38 1 3.8104 0.6987 -2.5963 39 1 5.7375 -0.8200 1.2405 40 1 7.2295 -0.8953 0.2725 41 1 5.8656 0.1102 -0.2717 42 1 4.9748 -2.7778 1.9672 43 1 5.5952 -4.8772 3.0945 44 1 6.9408 -6.5619 1.9052 45 1 7.6608 -6.1499 -0.4131 46 1 7.0336 -4.0539 -1.5430 47 1 2.9173 -1.1204 1.0289 48 1 2.7588 1.0463 2.1183 49 1 1.0870 0.6165 2.5525 50 1 2.5047 1.0622 4.8009 51 1 3.1304 1.8433 7.9850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571412610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:01 Heat of formation + Delta-G solvation = -58.812646 kcal Electronic energy + Delta-G solvation = -32117.839754 eV Core-core repulsion = 28016.442666 eV Total energy + Delta-G solvation = -4101.397088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72052 -40.22119 -39.77310 -37.82353 -36.31917 -35.91090 -34.94845 -33.31380 -32.18159 -31.76406 -30.36873 -28.34765 -27.97079 -27.30563 -25.78335 -25.13116 -23.47372 -22.63019 -21.37349 -21.17193 -20.12451 -19.88965 -18.16541 -17.99035 -17.77434 -17.22077 -16.99284 -16.54139 -16.44836 -16.05777 -15.93828 -15.68054 -15.55211 -15.09551 -14.89917 -14.60980 -14.30822 -14.21302 -14.11043 -13.75492 -13.69995 -13.52854 -13.42443 -13.31021 -13.14851 -12.98425 -12.93016 -12.83172 -12.63873 -12.50308 -12.43648 -12.22468 -12.14967 -11.99620 -11.83636 -11.75056 -11.54124 -10.67906 -10.35252 -10.03635 -9.77546 -9.66037 -9.60512 -9.25713 -8.49763 -5.98088 0.42908 0.54544 1.32208 1.36964 1.51547 1.63131 2.01234 2.03785 2.26067 2.90132 2.94726 3.16729 3.49271 3.50974 3.69087 3.91217 3.96500 4.10500 4.17957 4.20285 4.25095 4.26274 4.30379 4.34958 4.38688 4.47712 4.50045 4.53648 4.58405 4.65045 4.68118 4.73365 4.84797 4.87569 4.92832 4.95760 5.06752 5.13262 5.16992 5.21510 5.36531 5.38121 5.55807 5.59649 5.66121 5.74003 5.90467 6.13738 6.17189 6.35238 6.51723 6.58179 7.10309 7.22742 7.52492 8.09830 8.68117 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.004104 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.590318 B = 6821.717630 C = 9339.233126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.115 3.885 5 N -0.620 5.620 6 C 0.064 3.936 7 C 0.500 3.500 8 O -0.552 6.552 9 C -0.061 4.061 10 H 0.144 0.856 11 C -0.151 4.151 12 C -0.081 4.081 13 C -0.100 4.100 14 C -0.147 4.147 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.113 4.113 18 N -0.683 5.683 19 C 0.064 3.936 20 C 0.434 3.566 21 O -0.615 6.615 22 N -0.572 5.572 23 C -0.331 4.331 24 H 0.073 0.927 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.278 1.278 29 H -0.267 1.267 30 H -0.269 1.269 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.020 0.980 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.140 0.860 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.346 0.654 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 0.832 -23.832 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.076 0.924 4 C -0.008 4.008 5 N -0.354 5.354 6 C -0.078 4.078 7 C 0.289 3.711 8 O -0.429 6.429 9 C -0.082 4.082 10 H 0.161 0.839 11 C -0.208 4.208 12 C -0.082 4.082 13 C -0.118 4.118 14 C -0.166 4.166 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.130 4.130 18 N -0.322 5.322 19 C -0.068 4.068 20 C 0.221 3.779 21 O -0.501 6.501 22 N -0.210 5.210 23 C -0.461 4.461 24 H 0.091 0.909 25 C -0.210 4.210 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.203 1.203 29 H -0.192 1.192 30 H -0.194 1.194 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.040 0.960 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.158 0.842 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.170 0.830 48 H 0.076 0.924 49 H 0.117 0.883 50 H 0.229 0.771 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.105 -0.530 -23.336 24.127 hybrid contribution 0.366 0.576 1.615 1.754 sum 6.471 0.046 -21.720 22.664 Atomic orbital electron populations 1.21735 0.93261 1.01787 1.02428 1.22133 0.96998 0.96312 0.89292 0.92356 1.21801 0.79229 1.01861 0.97921 1.48000 1.07209 1.21576 1.58655 1.22332 0.96419 0.89694 0.99312 1.21124 0.91344 0.81568 0.77074 1.90831 1.65481 1.40738 1.45839 1.20330 0.91019 0.94132 1.02730 0.83866 1.22079 1.02558 0.97286 0.98847 1.19543 0.98843 0.96409 0.93356 1.20915 0.97859 0.97295 0.95775 1.21253 0.99990 0.95107 1.00214 1.21395 0.97759 0.99086 0.95937 1.21468 1.00353 0.97913 0.94523 1.21369 0.97723 0.93182 1.00741 1.60210 1.36098 1.32033 1.03871 1.21583 1.01695 0.93674 0.89885 1.20905 0.83359 0.88107 0.85491 1.90535 1.56030 1.18072 1.85461 1.41897 1.58557 1.12416 1.08104 1.19628 1.42071 0.95702 0.88651 0.90935 1.25988 0.97236 0.96632 1.01138 1.69676 1.48681 1.09571 1.28086 0.84922 0.78406 0.77900 0.77409 1.20267 1.19172 1.19360 0.93348 0.89120 0.93702 0.85459 0.91769 0.92177 0.88630 0.87980 0.96032 0.89566 0.88137 0.90223 0.87944 0.84170 0.82588 0.82502 0.83041 0.92428 0.88283 0.77082 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.41 71.98 0.68 -2.39 16 2 C 0.06 1.60 2.95 44.91 0.13 1.74 16 3 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 4 C 0.11 2.44 5.24 86.38 0.45 2.89 16 5 N -0.62 -12.98 2.66 -846.77 -2.25 -15.23 16 6 C 0.06 0.67 8.85 127.77 1.13 1.80 16 7 C 0.50 14.54 5.32 87.66 0.47 15.01 16 8 O -0.55 -22.51 13.29 -3.04 -0.04 -22.55 16 9 C -0.06 -1.41 2.10 -12.29 -0.03 -1.44 16 10 H 0.14 1.99 7.13 -2.38 -0.02 1.97 16 11 C -0.15 -3.31 8.64 71.98 0.62 -2.69 16 12 C -0.08 -2.38 4.39 -19.87 -0.09 -2.47 16 13 C -0.10 -3.89 7.94 22.27 0.18 -3.71 16 14 C -0.15 -5.35 10.05 22.27 0.22 -5.12 16 15 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 16 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 17 C -0.11 -2.56 9.67 22.27 0.22 -2.35 16 18 N -0.68 -25.87 5.82 -495.57 -2.88 -28.75 16 19 C 0.06 2.53 5.96 85.56 0.51 3.04 16 20 C 0.43 22.82 7.82 87.66 0.69 23.51 16 21 O -0.62 -37.85 15.78 -3.07 -0.05 -37.90 16 22 N -0.57 -31.34 5.29 -306.99 -1.62 -32.97 16 23 C -0.33 -19.87 9.68 84.04 0.81 -19.05 16 24 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 26 N -0.92 -51.05 13.05 21.66 0.28 -50.76 16 27 Si 0.99 44.88 29.55 68.60 2.03 46.91 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 31 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.13 1.51 7.89 -2.39 -0.02 1.49 16 35 H 0.06 1.76 7.42 -2.39 -0.02 1.75 16 36 H 0.06 0.66 6.95 -2.39 -0.02 0.64 16 37 H 0.10 0.63 6.01 -2.38 -0.01 0.61 16 38 H 0.10 0.50 7.89 -2.39 -0.02 0.48 16 39 H 0.02 0.67 7.38 -2.38 -0.02 0.65 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.56 4.53 -2.39 -0.01 1.55 16 42 H 0.08 3.86 7.52 -2.91 -0.02 3.84 16 43 H 0.10 3.91 8.06 -2.91 -0.02 3.88 16 44 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 45 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.16 2.24 7.95 -2.91 -0.02 2.22 16 47 H 0.35 14.26 4.17 -89.70 -0.37 13.89 16 48 H 0.06 2.00 8.06 -2.38 -0.02 1.98 16 49 H 0.10 3.56 7.44 -2.39 -0.02 3.55 16 50 H 0.40 20.46 7.90 -92.71 -0.73 19.73 16 51 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -86.05 407.94 2.21 -83.83 By element: Atomic # 1 Polarization: 54.69 SS G_CDS: -0.16 Total: 54.53 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.91 Total: 2.88 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.48 Total: -127.71 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.09 Total: -60.45 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -86.05 2.21 -83.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.021 kcal (2) G-P(sol) polarization free energy of solvation -86.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds