Wall clock time and date at job start Wed Apr 1 2020 04:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.50706 * 109.47135 * 240.00806 * 2 1 3 5 5 H 1.08002 * 119.99293 * 274.96938 * 4 2 1 6 6 C 1.37871 * 120.00077 * 94.97132 * 4 2 1 7 7 N 1.31519 * 119.99746 * 184.91780 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 4.91250 * 6 4 2 9 9 H 1.48504 * 109.47150 * 94.90503 * 8 6 4 10 10 H 1.48506 * 109.47368 * 214.89970 * 8 6 4 11 11 H 1.48502 * 109.47336 * 334.90088 * 8 6 4 12 12 C 1.50693 * 109.47670 * 120.00198 * 2 1 3 13 13 O 1.21297 * 120.00198 * 119.99661 * 12 2 1 14 14 N 1.34781 * 120.00195 * 300.00712 * 12 2 1 15 15 C 1.40122 * 119.99887 * 174.18601 * 14 12 2 16 16 C 1.38715 * 120.09112 * 335.28681 * 15 14 12 17 17 C 1.38201 * 119.98164 * 179.70128 * 16 15 14 18 18 C 1.38269 * 120.16735 * 0.29829 * 17 16 15 19 19 C 1.38241 * 120.17924 * 359.97438 * 18 17 16 20 20 C 1.38552 * 120.01676 * 359.97386 * 19 18 17 21 21 O 1.35972 * 120.08790 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99702 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.47260 * 180.02562 * 22 21 20 24 24 N 1.46897 * 109.47267 * 60.87027 * 23 22 21 25 25 C 1.46967 * 110.99808 * 51.61387 * 24 23 22 26 26 C 1.53050 * 109.36435 * 183.18821 * 25 24 23 27 27 N 1.46957 * 109.36341 * 301.60120 * 26 25 24 28 28 C 1.46959 * 110.88457 * 59.32174 * 27 26 25 29 29 C 1.46958 * 111.00309 * 175.41316 * 24 23 22 30 30 H 1.09000 * 109.47556 * 64.99516 * 1 2 3 31 31 H 1.09000 * 109.47013 * 184.99679 * 1 2 3 32 32 H 1.09002 * 109.47241 * 304.99133 * 1 2 3 33 33 H 0.97001 * 120.00245 * 180.02562 * 7 6 4 34 34 H 0.96999 * 119.99750 * 354.17836 * 14 12 2 35 35 H 1.07995 * 120.00961 * 359.97438 * 16 15 14 36 36 H 1.08004 * 119.91171 * 180.28364 * 17 16 15 37 37 H 1.08003 * 119.91039 * 179.97438 * 18 17 16 38 38 H 1.08004 * 119.99620 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47268 * 299.99723 * 22 21 20 40 40 H 1.08998 * 109.47436 * 59.99856 * 22 21 20 41 41 H 1.08995 * 109.47630 * 180.87333 * 23 22 21 42 42 H 1.09005 * 109.47002 * 300.87360 * 23 22 21 43 43 H 1.08993 * 109.48698 * 303.15465 * 25 24 23 44 44 H 1.09002 * 109.48740 * 63.22168 * 25 24 23 45 45 H 1.08999 * 109.48921 * 181.63429 * 26 25 24 46 46 H 1.09006 * 109.50596 * 61.57765 * 26 25 24 47 47 H 1.00902 * 110.99868 * 183.18844 * 27 26 25 48 48 H 1.08993 * 109.48856 * 180.71317 * 28 27 26 49 49 H 1.09002 * 109.50649 * 60.65237 * 28 27 26 50 50 H 1.08998 * 109.48917 * 296.77988 * 29 24 23 51 51 H 1.08999 * 109.48569 * 56.84631 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1359 -1.7853 -1.2290 6 6 2.3597 0.0123 -2.3583 7 7 2.7053 -0.6129 -3.4625 8 14 2.3122 1.8792 -2.3178 9 1 3.6692 2.4025 -2.0179 10 1 1.8646 2.3918 -3.6378 11 1 1.3650 2.3276 -1.2657 12 6 2.0324 -0.7104 1.2303 13 8 2.7298 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.0704 -0.9771 3.5959 16 6 2.2842 -2.3450 3.5104 17 6 2.6487 -3.0587 4.6363 18 6 2.7953 -2.4139 5.8505 19 6 2.5785 -1.0518 5.9447 20 6 2.2138 -0.3287 4.8205 21 8 2.0007 1.0112 4.9114 22 6 2.1702 1.6092 6.1981 23 6 1.8891 3.1102 6.1039 24 7 0.5040 3.3224 5.6632 25 6 -0.4363 2.5587 6.4954 26 6 -1.8567 2.7432 5.9560 27 7 -2.1969 4.1728 5.9583 28 6 -1.2568 4.9364 5.1261 29 6 0.1636 4.7520 5.6655 30 1 -0.3634 0.4344 -0.9313 31 1 -0.3633 -1.0238 0.0895 32 1 -0.3634 0.5893 0.8419 33 1 2.9360 -0.1046 -4.2558 34 1 1.2209 0.5845 2.5454 35 1 2.1700 -2.8513 2.5634 36 1 2.8193 -4.1230 4.5674 37 1 3.0799 -2.9758 6.7279 38 1 2.6934 -0.5512 6.8948 39 1 1.4764 1.1537 6.9047 40 1 3.1930 1.4514 6.5402 41 1 2.0335 3.5690 7.0820 42 1 2.5724 3.5634 5.3856 43 1 -0.1711 1.5019 6.4675 44 1 -0.3879 2.9191 7.5230 45 1 -2.5593 2.2011 6.5890 46 1 -1.9123 2.3577 4.9379 47 1 -3.1484 4.3185 5.6556 48 1 -1.5220 5.9932 5.1541 49 1 -1.3050 4.5764 4.0984 50 1 0.2188 5.1373 6.6836 51 1 0.8662 5.2941 5.0326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650356756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:19 Heat of formation + Delta-G solvation = -27.149969 kcal Electronic energy + Delta-G solvation = -31393.880981 eV Core-core repulsion = 27293.856890 eV Total energy + Delta-G solvation = -4100.024091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52835 -39.52059 -38.70303 -37.11429 -34.93343 -34.11681 -33.71258 -31.39098 -31.29098 -30.35758 -29.73474 -28.52247 -25.89884 -25.26286 -23.82276 -23.62236 -22.87024 -21.64585 -21.21412 -20.03833 -19.19479 -18.28569 -17.44600 -17.17638 -16.88228 -16.07369 -15.96881 -15.51191 -15.11629 -15.04348 -14.90782 -14.75142 -14.52073 -14.27644 -14.19418 -13.90275 -13.79885 -13.18874 -13.08721 -12.74016 -12.53710 -12.48378 -12.32843 -12.13456 -12.01460 -11.58080 -11.52559 -11.44190 -11.25766 -11.20389 -11.11291 -10.90581 -10.81933 -10.74470 -10.26760 -10.02096 -9.76383 -9.16662 -8.89839 -8.71323 -8.57183 -8.55484 -8.32809 -7.43076 -6.07469 -4.07134 1.52273 1.58820 3.08128 3.24253 3.31956 3.34330 3.47569 3.52109 3.72400 3.87497 4.09188 4.38189 4.45996 4.53711 4.72801 4.80612 4.92325 4.93989 5.00651 5.03100 5.08139 5.12638 5.15677 5.20727 5.23028 5.34640 5.46487 5.51351 5.57027 5.60822 5.65943 5.68598 5.74534 5.92061 6.09671 6.15241 6.32307 6.40490 6.45003 6.52109 6.53549 6.64639 6.72093 6.77551 6.83898 6.88237 6.99583 7.11882 7.16775 7.52796 7.58489 8.08070 8.51558 9.02230 9.07576 9.51862 11.05577 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.003678 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.893612 B = 7611.973838 C =10033.639488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 H 0.060 0.940 4 C -0.496 4.496 5 H 0.087 0.913 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.869 3.131 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.261 1.261 12 C 0.518 3.482 13 O -0.510 6.510 14 N -0.677 5.677 15 C 0.144 3.856 16 C -0.103 4.103 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.192 4.192 20 C 0.085 3.915 21 O -0.298 6.298 22 C 0.062 3.938 23 C 0.057 3.943 24 N -0.530 5.530 25 C 0.053 3.947 26 C 0.058 3.942 27 N -0.694 5.694 28 C 0.057 3.943 29 C 0.057 3.943 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.411 0.589 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.344 0.656 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.040 0.960 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 8.996 24.752 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.078 0.922 4 C -0.534 4.534 5 H 0.105 0.895 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.695 3.305 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.186 1.186 12 C 0.308 3.692 13 O -0.384 6.384 14 N -0.322 5.322 15 C 0.047 3.953 16 C -0.124 4.124 17 C -0.152 4.152 18 C -0.135 4.135 19 C -0.212 4.212 20 C 0.038 3.962 21 O -0.212 6.212 22 C -0.014 4.014 23 C -0.070 4.070 24 N -0.255 5.255 25 C -0.075 4.075 26 C -0.072 4.072 27 N -0.325 5.325 28 C -0.072 4.072 29 C -0.071 4.071 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.246 0.754 35 H 0.172 0.828 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.161 0.839 48 H 0.097 0.903 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.064 8.426 24.296 26.421 hybrid contribution -0.237 1.437 0.215 1.472 sum -6.301 9.863 24.510 27.161 Atomic orbital electron populations 1.21934 0.96541 1.00604 0.99987 1.19434 0.94186 0.97405 0.91671 0.92215 1.20721 1.43204 0.96194 0.93265 0.89530 1.25009 0.94575 0.98008 0.95316 1.69888 1.45923 1.35649 1.01632 0.86973 0.78925 0.86808 0.77746 1.20224 1.21083 1.18551 1.22077 0.78490 0.84975 0.83684 1.90537 1.35440 1.26264 1.86115 1.44018 1.57648 1.26186 1.04370 1.17337 1.02053 0.91033 0.84845 1.21431 0.99062 0.91387 1.00497 1.20967 1.02011 0.99981 0.92234 1.20786 1.01297 0.93726 0.97702 1.20908 1.07775 0.95452 0.97027 1.18705 1.00972 0.82899 0.93640 1.86136 1.85319 1.18233 1.31493 1.22834 1.00751 0.93014 0.84802 1.22173 0.90758 0.94097 1.00017 1.62130 1.01672 1.08553 1.53165 1.22246 0.91815 0.98879 0.94603 1.21982 0.95965 0.88722 1.00486 1.60546 1.06485 1.08789 1.56729 1.21988 0.91832 0.98128 0.95282 1.22161 0.96444 0.88468 1.00068 0.92290 0.93202 0.95367 0.92540 0.75378 0.82835 0.85942 0.86357 0.85959 0.92024 0.91661 0.92824 0.89261 0.89942 0.94353 0.90401 0.93769 0.83860 0.90345 0.93812 0.94221 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.05 37.16 0.34 -2.33 16 2 C -0.01 -0.12 2.27 -92.92 -0.21 -0.33 16 3 H 0.06 1.37 5.06 -51.93 -0.26 1.11 16 4 C -0.50 -14.17 8.36 -34.44 -0.29 -14.46 16 5 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.87 20.92 27.31 -169.99 -4.64 16.27 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.78 6.36 56.52 0.36 -5.42 16 12 C 0.52 11.64 6.95 -10.99 -0.08 11.56 16 13 O -0.51 -13.08 12.94 5.54 0.07 -13.01 16 14 N -0.68 -12.48 5.17 -9.75 -0.05 -12.53 16 15 C 0.14 2.50 6.45 -83.49 -0.54 1.96 16 16 C -0.10 -1.80 8.72 -39.42 -0.34 -2.14 16 17 C -0.13 -1.89 10.04 -39.58 -0.40 -2.28 16 18 C -0.12 -1.42 10.04 -39.57 -0.40 -1.82 16 19 C -0.19 -2.37 9.04 -39.46 -0.36 -2.72 16 20 C 0.09 1.24 6.70 -39.07 -0.26 0.98 16 21 O -0.30 -3.94 9.43 -19.65 -0.19 -4.12 16 22 C 0.06 0.57 4.30 37.16 0.16 0.73 16 23 C 0.06 0.49 5.55 -3.82 -0.02 0.47 16 24 N -0.53 -5.10 4.70 -234.46 -1.10 -6.20 16 25 C 0.05 0.47 5.10 -3.76 -0.02 0.45 16 26 C 0.06 0.50 6.72 -3.77 -0.03 0.48 16 27 N -0.69 -5.68 6.90 -113.63 -0.78 -6.46 16 28 C 0.06 0.47 6.72 -3.77 -0.03 0.45 16 29 C 0.06 0.48 5.62 -3.77 -0.02 0.46 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.47 7.86 -51.93 -0.41 0.06 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.41 6.78 8.05 -40.82 -0.33 6.45 16 35 H 0.15 3.04 5.79 -52.49 -0.30 2.74 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 1.16 6.30 -52.48 -0.33 0.83 16 39 H 0.06 0.51 5.71 -51.93 -0.30 0.21 16 40 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 41 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.77 5.98 -51.93 -0.31 0.46 16 44 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.34 2.29 8.90 -39.29 -0.35 1.94 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -33.51 401.00 -10.52 -44.04 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.06 Total: 9.19 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.58 Total: -6.55 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -1.16 Total: -51.86 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.11 Total: -17.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.64 Total: 16.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.51 -10.52 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650356756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.885 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds