Wall clock time and date at job start Wed Apr 1 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.50706 * 109.47135 * 240.00806 * 2 1 3 5 5 H 1.08002 * 119.99293 * 274.96938 * 4 2 1 6 6 C 1.37871 * 120.00077 * 94.97132 * 4 2 1 7 7 N 1.31519 * 119.99746 * 184.91780 * 6 4 2 8 8 Si 1.86793 * 120.00262 * 4.91250 * 6 4 2 9 9 H 1.48504 * 109.47150 * 94.90503 * 8 6 4 10 10 H 1.48506 * 109.47368 * 214.89970 * 8 6 4 11 11 H 1.48502 * 109.47336 * 334.90088 * 8 6 4 12 12 C 1.50693 * 109.47670 * 120.00198 * 2 1 3 13 13 O 1.21297 * 120.00198 * 119.99661 * 12 2 1 14 14 N 1.34781 * 120.00195 * 300.00712 * 12 2 1 15 15 C 1.40122 * 119.99887 * 174.18601 * 14 12 2 16 16 C 1.38715 * 120.09112 * 335.28681 * 15 14 12 17 17 C 1.38201 * 119.98164 * 179.70128 * 16 15 14 18 18 C 1.38269 * 120.16735 * 0.29829 * 17 16 15 19 19 C 1.38241 * 120.17924 * 359.97438 * 18 17 16 20 20 C 1.38552 * 120.01676 * 359.97386 * 19 18 17 21 21 O 1.35972 * 120.08790 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99702 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.47260 * 180.02562 * 22 21 20 24 24 N 1.46897 * 109.47267 * 60.87027 * 23 22 21 25 25 C 1.46967 * 110.99808 * 51.61387 * 24 23 22 26 26 C 1.53050 * 109.36435 * 183.18821 * 25 24 23 27 27 N 1.46957 * 109.36341 * 301.60120 * 26 25 24 28 28 C 1.46959 * 110.88457 * 59.32174 * 27 26 25 29 29 C 1.46958 * 111.00309 * 175.41316 * 24 23 22 30 30 H 1.09000 * 109.47556 * 64.99516 * 1 2 3 31 31 H 1.09000 * 109.47013 * 184.99679 * 1 2 3 32 32 H 1.09002 * 109.47241 * 304.99133 * 1 2 3 33 33 H 0.97001 * 120.00245 * 180.02562 * 7 6 4 34 34 H 0.96999 * 119.99750 * 354.17836 * 14 12 2 35 35 H 1.07995 * 120.00961 * 359.97438 * 16 15 14 36 36 H 1.08004 * 119.91171 * 180.28364 * 17 16 15 37 37 H 1.08003 * 119.91039 * 179.97438 * 18 17 16 38 38 H 1.08004 * 119.99620 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47268 * 299.99723 * 22 21 20 40 40 H 1.08998 * 109.47436 * 59.99856 * 22 21 20 41 41 H 1.08995 * 109.47630 * 180.87333 * 23 22 21 42 42 H 1.09005 * 109.47002 * 300.87360 * 23 22 21 43 43 H 1.08993 * 109.48698 * 303.15465 * 25 24 23 44 44 H 1.09002 * 109.48740 * 63.22168 * 25 24 23 45 45 H 1.08999 * 109.48921 * 181.63429 * 26 25 24 46 46 H 1.09006 * 109.50596 * 61.57765 * 26 25 24 47 47 H 1.00902 * 110.99868 * 183.18844 * 27 26 25 48 48 H 1.08993 * 109.48856 * 180.71317 * 28 27 26 49 49 H 1.09002 * 109.50649 * 60.65237 * 28 27 26 50 50 H 1.08998 * 109.48917 * 296.77988 * 29 24 23 51 51 H 1.08999 * 109.48569 * 56.84631 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1359 -1.7853 -1.2290 6 6 2.3597 0.0123 -2.3583 7 7 2.7053 -0.6129 -3.4625 8 14 2.3122 1.8792 -2.3178 9 1 3.6692 2.4025 -2.0179 10 1 1.8646 2.3918 -3.6378 11 1 1.3650 2.3276 -1.2657 12 6 2.0324 -0.7104 1.2303 13 8 2.7298 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.0704 -0.9771 3.5959 16 6 2.2842 -2.3450 3.5104 17 6 2.6487 -3.0587 4.6363 18 6 2.7953 -2.4139 5.8505 19 6 2.5785 -1.0518 5.9447 20 6 2.2138 -0.3287 4.8205 21 8 2.0007 1.0112 4.9114 22 6 2.1702 1.6092 6.1981 23 6 1.8891 3.1102 6.1039 24 7 0.5040 3.3224 5.6632 25 6 -0.4363 2.5587 6.4954 26 6 -1.8567 2.7432 5.9560 27 7 -2.1969 4.1728 5.9583 28 6 -1.2568 4.9364 5.1261 29 6 0.1636 4.7520 5.6655 30 1 -0.3634 0.4344 -0.9313 31 1 -0.3633 -1.0238 0.0895 32 1 -0.3634 0.5893 0.8419 33 1 2.9360 -0.1046 -4.2558 34 1 1.2209 0.5845 2.5454 35 1 2.1700 -2.8513 2.5634 36 1 2.8193 -4.1230 4.5674 37 1 3.0799 -2.9758 6.7279 38 1 2.6934 -0.5512 6.8948 39 1 1.4764 1.1537 6.9047 40 1 3.1930 1.4514 6.5402 41 1 2.0335 3.5690 7.0820 42 1 2.5724 3.5634 5.3856 43 1 -0.1711 1.5019 6.4675 44 1 -0.3879 2.9191 7.5230 45 1 -2.5593 2.2011 6.5890 46 1 -1.9123 2.3577 4.9379 47 1 -3.1484 4.3185 5.6556 48 1 -1.5220 5.9932 5.1541 49 1 -1.3050 4.5764 4.0984 50 1 0.2188 5.1373 6.6836 51 1 0.8662 5.2941 5.0326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650356756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:18 Heat of formation + Delta-G solvation = -53.232006 kcal Electronic energy + Delta-G solvation = -31395.011983 eV Core-core repulsion = 27293.856890 eV Total energy + Delta-G solvation = -4101.155093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75379 -40.56107 -39.78790 -38.18819 -35.74121 -35.69637 -35.50403 -33.38552 -31.95606 -31.24094 -30.82306 -29.61806 -27.26854 -26.59449 -25.12511 -24.45592 -23.98099 -22.87099 -22.22061 -20.86873 -20.66158 -19.45128 -19.13288 -18.26294 -18.03012 -17.56999 -16.83020 -16.76074 -16.29860 -16.01272 -15.83277 -15.76303 -15.57519 -15.37848 -15.24700 -15.17884 -14.79430 -14.69482 -14.45907 -14.14389 -14.05504 -13.59667 -13.22750 -13.16540 -13.01433 -12.97339 -12.82604 -12.69014 -12.50372 -12.24890 -12.22476 -12.12891 -11.94439 -11.75212 -11.61817 -11.46450 -11.40844 -11.24955 -10.76329 -10.38286 -9.53893 -9.50766 -9.21046 -8.67077 -8.29051 -6.35824 0.34425 0.47978 1.34335 1.37042 1.47694 1.82445 2.11471 2.30951 2.34003 2.87657 2.91948 3.07338 3.27970 3.74820 3.91181 3.95149 4.03549 4.07410 4.11816 4.19873 4.30219 4.35838 4.38246 4.38649 4.40537 4.46350 4.52193 4.53032 4.61202 4.67124 4.69359 4.80579 4.84815 4.86222 4.91753 4.92915 5.03205 5.07271 5.10398 5.22188 5.36477 5.45272 5.53892 5.59088 5.66789 5.89152 5.90589 6.04972 6.14228 6.22896 6.43693 6.53191 6.58465 6.77926 7.24797 7.38608 8.88706 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.003678 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.893612 B = 7611.973838 C =10033.639488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.507 4.507 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.942 3.058 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.223 1.223 12 C 0.517 3.483 13 O -0.557 6.557 14 N -0.659 5.659 15 C 0.103 3.897 16 C -0.127 4.127 17 C -0.143 4.143 18 C -0.098 4.098 19 C -0.185 4.185 20 C 0.095 3.905 21 O -0.312 6.312 22 C 0.055 3.945 23 C 0.059 3.941 24 N -0.549 5.549 25 C 0.056 3.944 26 C 0.058 3.942 27 N -0.695 5.695 28 C 0.057 3.943 29 C 0.057 3.943 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.268 0.732 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.026 0.974 47 H 0.351 0.649 48 H 0.093 0.907 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 11.866 28.959 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.545 4.545 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.764 3.236 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.145 1.145 12 C 0.307 3.693 13 O -0.434 6.434 14 N -0.305 5.305 15 C 0.008 3.992 16 C -0.148 4.148 17 C -0.161 4.161 18 C -0.117 4.117 19 C -0.204 4.204 20 C 0.047 3.953 21 O -0.226 6.226 22 C -0.020 4.020 23 C -0.069 4.069 24 N -0.274 5.274 25 C -0.072 4.072 26 C -0.072 4.072 27 N -0.327 5.327 28 C -0.072 4.072 29 C -0.071 4.071 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.258 0.742 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.170 0.830 48 H 0.111 0.889 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.697 11.317 28.576 31.456 hybrid contribution -0.039 0.444 -0.929 1.031 sum -6.736 11.761 27.647 30.790 Atomic orbital electron populations 1.21807 0.93739 1.00966 1.01795 1.19392 0.96255 0.97211 0.90002 0.90856 1.20830 1.43701 0.93920 0.96044 0.95581 1.26017 0.93879 1.04427 0.94386 1.70067 1.47724 1.38307 1.02724 0.85807 0.79856 0.78817 0.79111 1.19926 1.20463 1.14531 1.21771 0.78240 0.84413 0.84878 1.90534 1.37733 1.28217 1.86922 1.43549 1.57034 1.26229 1.03643 1.17514 1.05089 0.91202 0.85440 1.21268 1.01117 0.92126 1.00276 1.21185 1.01958 1.00842 0.92161 1.21247 0.98537 0.94016 0.97857 1.21355 1.05918 0.95483 0.97667 1.18698 0.99848 0.83777 0.92943 1.86128 1.85043 1.17392 1.34054 1.23147 1.02199 0.93248 0.83400 1.22195 0.90061 0.93643 1.00963 1.62132 1.02319 1.09160 1.53818 1.22204 0.91700 0.98600 0.94703 1.21986 0.96432 0.89107 0.99668 1.60574 1.07050 1.08447 1.56647 1.22012 0.91975 0.98899 0.94355 1.22173 0.96554 0.88049 1.00287 0.92252 0.94172 0.91165 0.92320 0.74249 0.86660 0.84443 0.82370 0.82146 0.90463 0.89974 0.90625 0.89938 0.90290 0.93890 0.89263 0.95592 0.83014 0.88908 0.95371 0.93903 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.05 71.98 0.65 -4.30 16 2 C -0.01 -0.33 2.27 -12.29 -0.03 -0.36 16 3 H 0.07 3.26 5.06 -2.39 -0.01 3.25 16 4 C -0.51 -30.56 8.36 25.60 0.21 -30.35 16 5 H 0.03 1.83 7.61 -2.91 -0.02 1.81 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 8 Si 0.94 43.14 27.31 68.60 1.87 45.02 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.22 -8.77 6.36 99.48 0.63 -8.14 16 12 C 0.52 24.17 6.95 87.65 0.61 24.78 16 13 O -0.56 -30.76 12.94 -3.08 -0.04 -30.80 16 14 N -0.66 -24.45 5.17 -303.13 -1.57 -26.01 16 15 C 0.10 3.56 6.45 38.19 0.25 3.81 16 16 C -0.13 -4.60 8.72 22.37 0.20 -4.41 16 17 C -0.14 -3.91 10.04 22.27 0.22 -3.68 16 18 C -0.10 -2.03 10.04 22.28 0.22 -1.81 16 19 C -0.19 -3.80 9.04 22.35 0.20 -3.60 16 20 C 0.09 2.55 6.70 22.60 0.15 2.70 16 21 O -0.31 -7.39 9.43 -93.23 -0.88 -8.27 16 22 C 0.05 0.80 4.30 71.98 0.31 1.11 16 23 C 0.06 0.81 5.55 86.30 0.48 1.28 16 24 N -0.55 -9.11 4.70 -895.70 -4.21 -13.32 16 25 C 0.06 0.85 5.10 86.31 0.44 1.29 16 26 C 0.06 0.89 6.72 86.31 0.58 1.47 16 27 N -0.69 -9.92 6.90 -513.43 -3.54 -13.46 16 28 C 0.06 0.82 6.72 86.31 0.58 1.40 16 29 C 0.06 0.83 5.62 86.31 0.48 1.32 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.18 7.86 -2.39 -0.02 2.16 16 33 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.42 13.43 8.05 -92.71 -0.75 12.69 16 35 H 0.12 5.03 5.79 -2.91 -0.02 5.01 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 39 H 0.08 0.92 5.71 -2.39 -0.01 0.90 16 40 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 41 H 0.08 0.73 8.13 -2.39 -0.02 0.71 16 42 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.08 1.24 5.98 -2.39 -0.01 1.22 16 44 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.35 4.02 8.90 -89.69 -0.80 3.22 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.93 401.00 -2.71 -82.64 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.66 Total: 33.33 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 6.03 Total: -8.29 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -9.03 Total: -113.63 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.92 Total: -39.07 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.87 Total: 45.02 kcal Total: -79.93 -2.71 -82.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650356756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.408 kcal (2) G-P(sol) polarization free energy of solvation -79.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds