Wall clock time and date at job start Wed Apr 1 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47131 * 2 1 4 4 C 1.50706 * 109.46941 * 119.99517 * 2 1 3 5 5 C 1.38361 * 119.85072 * 120.00069 * 4 2 1 6 6 C 1.37952 * 120.14484 * 180.02562 * 5 4 2 7 7 C 1.39575 * 119.85252 * 359.97438 * 6 5 4 8 8 C 1.47848 * 120.14648 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99779 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00406 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.46831 * 64.99646 * 12 11 10 14 14 C 1.52998 * 109.47211 * 185.00004 * 12 11 10 15 15 N 1.46906 * 109.47010 * 305.00036 * 12 11 10 16 16 C 1.46898 * 110.99888 * 155.00014 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 C 1.39580 * 119.71389 * 0.25285 * 7 6 5 29 29 C 1.37964 * 119.84761 * 359.50644 * 28 7 6 30 30 H 1.09004 * 109.46894 * 300.00541 * 1 2 3 31 31 H 1.09002 * 109.47246 * 60.00246 * 1 2 3 32 32 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47499 * 239.99644 * 2 1 3 34 34 H 1.09003 * 109.47120 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46855 * 299.99994 * 3 2 1 36 36 H 1.09004 * 109.47673 * 59.99936 * 3 2 1 37 37 H 1.08004 * 119.92436 * 0.02562 * 5 4 2 38 38 H 1.07994 * 120.07483 * 179.97438 * 6 5 4 39 39 H 0.97004 * 119.99971 * 0.02562 * 10 8 7 40 40 H 1.08993 * 109.47197 * 60.00229 * 11 10 8 41 41 H 1.08997 * 109.47140 * 299.99817 * 11 10 8 42 42 H 1.09002 * 109.46901 * 59.99641 * 14 12 11 43 43 H 1.09001 * 109.47093 * 179.97438 * 14 12 11 44 44 H 1.09002 * 109.47121 * 299.99744 * 14 12 11 45 45 H 1.00902 * 110.99923 * 278.95955 * 15 12 11 46 46 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 47 47 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 48 48 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 49 49 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 50 50 H 1.07992 * 120.07520 * 179.72942 * 28 7 6 51 51 H 1.08000 * 119.92703 * 180.23232 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8276 -1.8350 1.1002 6 6 3.2903 -2.4903 2.2225 7 6 2.9549 -2.0160 3.4916 8 6 3.4468 -2.7135 4.6989 9 8 4.1452 -3.7021 4.5874 10 7 3.1216 -2.2527 5.9229 11 6 3.6095 -2.9436 7.1191 12 6 3.0996 -2.2222 8.3684 13 1 2.0132 -2.2986 8.4140 14 6 3.7091 -2.8675 9.6145 15 7 3.4888 -0.8069 8.3097 16 6 2.5773 0.0233 9.1084 17 6 3.0070 1.4653 9.0236 18 8 3.9773 1.7712 8.3632 19 7 2.3130 2.4150 9.6816 20 6 2.7042 3.7268 9.6050 21 1 3.5681 3.9991 9.0169 22 6 1.9884 4.7059 10.2829 23 7 2.3630 5.9633 10.2090 24 14 0.4936 4.2349 11.2994 25 1 0.9164 3.9320 12.6904 26 1 -0.4729 5.3622 11.3102 27 1 -0.1507 3.0359 10.7059 28 6 2.1483 -0.8836 3.6162 29 6 1.6964 -0.2348 2.4857 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.0866 -2.2007 0.1175 38 1 3.9106 -3.3683 2.1194 39 1 2.5645 -1.4636 6.0119 40 1 4.6994 -2.9444 7.1191 41 1 3.2453 -3.9709 7.1192 42 1 4.7955 -2.7911 9.5687 43 1 3.3462 -2.3533 10.5044 44 1 3.4203 -3.9177 9.6581 45 1 4.4451 -0.6823 8.6063 46 1 1.5628 -0.0764 8.7226 47 1 2.6046 -0.3038 10.1478 48 1 1.5373 2.1703 10.2101 49 1 1.8636 6.6469 10.6826 50 1 1.8817 -0.5142 4.5953 51 1 1.0753 0.6437 2.5806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662398272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:05 Heat of formation + Delta-G solvation = -58.969828 kcal Electronic energy + Delta-G solvation = -29790.330430 eV Core-core repulsion = 25688.926527 eV Total energy + Delta-G solvation = -4101.403904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.34678 -39.04958 -38.55435 -37.03336 -35.45979 -34.25040 -33.84560 -31.75501 -31.35882 -30.81813 -30.07677 -27.41116 -26.74695 -26.37032 -24.09285 -23.65130 -22.87438 -21.12135 -20.94562 -19.91327 -19.46179 -18.48938 -17.95345 -16.55898 -16.19649 -15.97580 -15.50762 -15.29316 -15.09600 -15.00609 -14.84317 -14.57859 -14.19877 -14.01073 -13.81050 -13.72922 -13.45094 -13.26780 -13.08231 -12.88783 -12.78171 -12.66821 -12.53962 -12.44433 -12.19139 -12.16516 -11.81599 -11.60025 -11.53887 -11.40818 -11.21548 -11.11549 -11.07250 -10.87431 -10.64231 -10.02048 -9.94007 -9.62126 -9.13925 -9.09324 -8.79430 -8.67618 -8.27864 -8.21590 -6.35397 -3.87199 0.73565 1.24152 2.82938 2.97898 3.02405 3.11282 3.18768 3.68110 3.76998 3.97831 4.06092 4.33747 4.48404 4.66126 4.70229 4.77642 4.81704 4.88414 4.90174 4.95563 5.09921 5.13514 5.17321 5.20497 5.31781 5.36173 5.41163 5.49115 5.55335 5.56017 5.57989 5.61381 5.64889 5.74185 5.76795 5.83496 5.85652 5.87777 5.92096 5.96849 5.97734 6.19012 6.24135 6.40609 6.45257 6.73903 6.97235 7.45529 7.53189 7.58486 8.09765 8.24483 8.54717 8.90452 9.37594 9.77300 10.77653 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007900 B = 0.002667 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.565910 B =10496.435437 C =13320.516379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.054 4.054 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.138 4.138 8 C 0.557 3.443 9 O -0.550 6.550 10 N -0.707 5.707 11 C 0.134 3.866 12 C 0.068 3.932 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.448 3.552 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.077 4.077 29 C -0.122 4.122 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.356 0.644 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.370 0.630 49 H 0.274 0.726 50 H 0.130 0.870 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -17.282 -13.435 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.204 4.204 4 C -0.054 4.054 5 C -0.148 4.148 6 C -0.078 4.078 7 C -0.141 4.141 8 C 0.344 3.656 9 O -0.430 6.430 10 N -0.359 5.359 11 C 0.010 3.990 12 C -0.043 4.043 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.297 5.297 16 C -0.086 4.086 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.096 4.096 29 C -0.140 4.140 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.176 0.824 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.147 0.853 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.029 -17.404 -14.453 23.174 hybrid contribution -1.212 0.079 1.995 2.336 sum -6.241 -17.324 -12.457 22.232 Atomic orbital electron populations 1.21870 0.94091 1.02054 1.02227 1.20201 0.96149 0.96317 0.95165 1.21883 1.01472 0.94768 1.02280 1.20102 0.95707 0.94716 0.94861 1.21016 0.99136 0.96041 0.98588 1.21221 0.96899 0.98835 0.90826 1.19939 1.02290 0.98048 0.93777 1.18277 0.80075 0.83827 0.83387 1.90739 1.38571 1.26652 1.87030 1.45720 1.53321 1.32001 1.04820 1.21339 0.99717 0.94949 0.83038 1.21869 1.00394 0.88621 0.93445 0.89769 1.22433 1.01844 1.01580 0.98174 1.60175 1.07414 1.03952 1.58198 1.21761 0.97537 0.93144 0.96195 1.19697 0.86311 0.86196 0.84432 1.90582 1.28475 1.82112 1.43332 1.42212 1.27632 1.07811 1.45280 1.19426 1.14142 0.80009 1.29855 0.86285 1.25040 0.98191 0.95051 0.97843 1.69618 1.40141 0.99905 1.42362 0.86676 0.82986 0.78696 0.81033 1.19675 1.20149 1.19496 1.21386 0.95181 0.93698 0.99313 1.20954 1.01064 1.00377 0.91561 0.92177 0.92255 0.92523 0.90352 0.92339 0.92260 0.92054 0.85598 0.84836 0.75415 0.91350 0.91245 0.91843 0.91965 0.91755 0.82390 0.89540 0.93539 0.79724 0.91573 0.85263 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.00 37.16 0.33 -0.65 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.73 16 3 C -0.15 -1.11 9.00 37.16 0.33 -0.78 16 4 C -0.05 -0.51 4.79 -104.53 -0.50 -1.01 16 5 C -0.13 -1.26 9.65 -39.64 -0.38 -1.64 16 6 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 7 C -0.14 -1.73 5.87 -104.97 -0.62 -2.35 16 8 C 0.56 7.88 7.77 -12.33 -0.10 7.79 16 9 O -0.55 -9.32 16.35 5.32 0.09 -9.23 16 10 N -0.71 -8.74 5.34 -61.25 -0.33 -9.07 16 11 C 0.13 1.50 5.37 -4.04 -0.02 1.48 16 12 C 0.07 0.69 2.75 -67.71 -0.19 0.50 16 13 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 14 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16 15 N -0.66 -9.02 5.31 -107.99 -0.57 -9.60 16 16 C 0.05 0.68 5.97 -4.97 -0.03 0.65 16 17 C 0.45 9.57 7.82 -10.98 -0.09 9.49 16 18 O -0.56 -14.49 15.78 5.55 0.09 -14.40 16 19 N -0.59 -13.44 5.09 -10.96 -0.06 -13.50 16 20 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.31 13.96 55.50 0.77 -24.53 16 24 Si 0.88 18.83 27.74 -169.99 -4.71 14.12 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 28 C -0.08 -0.87 9.54 -39.18 -0.37 -1.25 16 29 C -0.12 -1.25 8.69 -39.64 -0.34 -1.59 16 30 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 37 H 0.13 0.93 7.94 -52.48 -0.42 0.52 16 38 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16 39 H 0.41 4.81 6.17 -40.82 -0.25 4.56 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.36 5.28 8.17 -39.29 -0.32 4.96 16 46 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 47 H 0.05 0.60 7.44 -51.93 -0.39 0.21 16 48 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 49 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.13 1.36 6.41 -52.49 -0.34 1.02 16 51 H 0.13 1.15 7.08 -52.49 -0.37 0.78 16 LS Contribution 417.39 15.07 6.29 6.29 Total: -1.00 -33.65 417.39 -9.01 -42.66 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -8.04 Total: 17.21 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.54 Total: 0.06 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.18 Total: -56.70 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.17 Total: -23.63 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.12 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.65 -9.01 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662398272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.313 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds