Wall clock time and date at job start Wed Apr 1 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 C 1.50703 * 109.47213 * 119.99736 * 2 1 3 5 5 C 1.38361 * 119.85204 * 120.00127 * 4 2 1 6 6 C 1.37957 * 120.14419 * 180.02562 * 5 4 2 7 7 C 1.39575 * 119.85136 * 359.97438 * 6 5 4 8 8 C 1.47849 * 120.14473 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99613 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00250 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46795 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47362 * 294.99355 * 12 11 10 14 14 C 1.53006 * 109.46623 * 174.99907 * 12 11 10 15 15 N 1.46898 * 109.47548 * 55.00094 * 12 11 10 16 16 C 1.46900 * 110.99922 * 204.99872 * 15 12 11 17 17 C 1.50704 * 109.46782 * 179.97438 * 16 15 12 18 18 O 1.21294 * 120.00249 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99818 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00065 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99863 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00027 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99836 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47149 * 60.00182 * 24 22 20 26 26 H 1.48506 * 109.46997 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47249 * 299.99631 * 24 22 20 28 28 C 1.39574 * 119.71282 * 0.24767 * 7 6 5 29 29 C 1.37953 * 119.85237 * 359.51550 * 28 7 6 30 30 H 1.09001 * 109.46773 * 300.00087 * 1 2 3 31 31 H 1.08996 * 109.47061 * 60.00256 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47251 * 240.00144 * 2 1 3 34 34 H 1.08995 * 109.47720 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47237 * 300.00270 * 3 2 1 36 36 H 1.08998 * 109.47203 * 59.99512 * 3 2 1 37 37 H 1.07994 * 119.92635 * 0.02562 * 5 4 2 38 38 H 1.07995 * 120.07363 * 179.97438 * 6 5 4 39 39 H 0.97002 * 119.99547 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.46697 * 59.99776 * 11 10 8 41 41 H 1.09001 * 109.46738 * 299.99896 * 11 10 8 42 42 H 1.09001 * 109.47002 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.46955 * 300.00075 * 14 12 11 44 44 H 1.09000 * 109.47050 * 59.99904 * 14 12 11 45 45 H 1.00893 * 111.00120 * 81.04124 * 15 12 11 46 46 H 1.08996 * 109.46839 * 299.99510 * 16 15 12 47 47 H 1.09003 * 109.47177 * 60.00055 * 16 15 12 48 48 H 0.97002 * 120.00090 * 359.97438 * 19 17 16 49 49 H 0.97005 * 119.99207 * 180.02562 * 23 22 20 50 50 H 1.08004 * 120.07260 * 179.72573 * 28 7 6 51 51 H 1.08006 * 119.93134 * 180.23111 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8277 -1.8350 1.1000 6 6 3.2904 -2.4903 2.2224 7 6 2.9551 -2.0160 3.4915 8 6 3.4470 -2.7135 4.6988 9 8 4.1447 -3.7026 4.5872 10 7 3.1218 -2.2528 5.9228 11 6 3.6088 -2.9443 7.1190 12 6 3.0991 -2.2228 8.3682 13 1 3.5349 -1.2248 8.4147 14 6 3.5024 -3.0139 9.6143 15 7 1.6352 -2.1156 8.3088 16 6 1.1578 -0.9790 9.1078 17 6 -0.3448 -0.9010 9.0223 18 8 -0.9576 -1.7120 8.3605 19 7 -1.0077 0.0700 9.6811 20 6 -2.3747 0.1408 9.6038 21 1 -2.9203 -0.5814 9.0145 22 6 -3.0580 1.1422 10.2827 23 7 -2.3940 2.0212 10.9993 24 14 -4.9205 1.2390 10.1767 25 1 -5.5121 -0.0180 10.7012 26 1 -5.4032 2.3876 10.9849 27 1 -5.3268 1.4242 8.7604 28 6 2.1486 -0.8837 3.6161 29 6 1.6965 -0.2349 2.4857 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.0867 -2.2007 0.1175 38 1 3.9108 -3.3683 2.1193 39 1 2.5647 -1.4637 6.0118 40 1 4.6988 -2.9460 7.1192 41 1 3.2438 -3.9714 7.1188 42 1 3.1396 -2.4997 10.5043 43 1 3.0666 -4.0118 9.5678 44 1 4.5886 -3.0934 9.6583 45 1 1.1974 -2.9750 8.6049 46 1 1.4563 -1.1148 10.1472 47 1 1.5917 -0.0563 8.7225 48 1 -0.5177 0.7184 10.2107 49 1 -2.8712 2.7200 11.4735 50 1 1.8819 -0.5142 4.5953 51 1 1.0755 0.6436 2.5806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662398273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:08 Heat of formation + Delta-G solvation = -66.263218 kcal Electronic energy + Delta-G solvation = -29739.630455 eV Core-core repulsion = 25637.910286 eV Total energy + Delta-G solvation = -4101.720169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32222 -38.99825 -38.39669 -36.92844 -35.44854 -34.19578 -33.78252 -31.45088 -31.18937 -30.73285 -30.03456 -27.40937 -26.64866 -26.23017 -24.15347 -23.74389 -22.85736 -21.05000 -20.92256 -19.89261 -19.34935 -18.06783 -17.86394 -16.53483 -16.18356 -15.88083 -15.50197 -15.21362 -15.03274 -14.95894 -14.56990 -14.54209 -14.14749 -13.97041 -13.88148 -13.76770 -13.52554 -13.27033 -13.09661 -12.84969 -12.74889 -12.55613 -12.51395 -12.21622 -12.15634 -11.73751 -11.61380 -11.53934 -11.44682 -11.39753 -11.09995 -11.06050 -11.00603 -10.86260 -10.47467 -10.25189 -9.91016 -9.54048 -9.12075 -9.06475 -8.77087 -8.54340 -8.15459 -8.00554 -6.45866 -3.86808 0.75319 1.25688 2.85319 3.17047 3.22593 3.23221 3.27496 3.78948 3.85724 4.02482 4.26054 4.34825 4.49471 4.73368 4.75066 4.81898 4.89061 4.90611 4.98783 5.09088 5.13954 5.17483 5.21911 5.24029 5.33321 5.36311 5.47546 5.56501 5.58083 5.59395 5.64321 5.67005 5.71415 5.78963 5.85443 5.87112 5.92915 5.96476 5.97451 6.02126 6.20786 6.21466 6.25990 6.41796 6.49371 6.75503 7.10207 7.51140 7.55133 7.62394 8.01675 8.27761 8.56600 9.13705 9.49641 10.00934 10.71692 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007427 B = 0.002665 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3769.277222 B =10502.230228 C =13673.218848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.054 4.054 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.137 4.137 8 C 0.556 3.444 9 O -0.551 6.551 10 N -0.706 5.706 11 C 0.134 3.866 12 C 0.067 3.933 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.077 4.077 29 C -0.122 4.122 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.354 0.646 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.130 0.870 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.443 -1.901 -15.062 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.054 4.054 5 C -0.148 4.148 6 C -0.078 4.078 7 C -0.140 4.140 8 C 0.344 3.656 9 O -0.431 6.431 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.044 4.044 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.297 5.297 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.466 6.466 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.096 4.096 29 C -0.140 4.140 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.174 0.826 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.148 0.852 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.431 -2.624 -16.015 21.066 hybrid contribution -0.840 0.585 1.472 1.793 sum 12.591 -2.039 -14.543 19.344 Atomic orbital electron populations 1.21880 0.93937 1.02312 1.02256 1.20198 0.96283 0.96162 0.95176 1.21869 1.01213 0.94947 1.02220 1.20097 0.95682 0.94803 0.94848 1.21012 0.99206 0.96017 0.98575 1.21222 0.97041 0.98697 0.90828 1.19948 1.02345 0.97939 0.93794 1.18275 0.80079 0.83858 0.83397 1.90736 1.38930 1.26359 1.87037 1.45728 1.52962 1.32276 1.04816 1.21346 0.98100 0.96501 0.83089 1.21863 0.89523 0.99650 0.93319 0.89767 1.22431 1.02261 1.01021 0.98289 1.60179 1.03234 1.07987 1.58316 1.21725 0.95562 0.95041 0.96010 1.19799 0.88212 0.84716 0.84853 1.90540 1.68920 1.42637 1.44546 1.41858 1.07541 1.26873 1.43656 1.19650 0.81626 1.13022 1.28691 0.87983 1.25257 1.00651 0.95638 0.96305 1.69605 1.36720 1.16528 1.31446 0.85927 0.82163 0.77756 0.78445 1.19905 1.20961 1.19847 1.21396 0.94930 0.93874 0.99352 1.20951 1.00807 1.00657 0.91558 0.92069 0.92276 0.92366 0.90363 0.92503 0.92279 0.92159 0.85619 0.84842 0.75385 0.91269 0.91421 0.91907 0.91939 0.91822 0.82584 0.93667 0.89672 0.77489 0.91793 0.85210 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.01 37.16 0.33 -0.77 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.74 16 3 C -0.15 -1.00 9.00 37.16 0.33 -0.66 16 4 C -0.05 -0.52 4.79 -104.53 -0.50 -1.02 16 5 C -0.13 -1.28 9.65 -39.64 -0.38 -1.66 16 6 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 7 C -0.14 -1.76 5.87 -104.97 -0.62 -2.38 16 8 C 0.56 8.06 7.77 -12.33 -0.10 7.96 16 9 O -0.55 -9.49 16.35 5.32 0.09 -9.40 16 10 N -0.71 -9.07 5.34 -61.25 -0.33 -9.39 16 11 C 0.13 1.58 5.37 -4.04 -0.02 1.56 16 12 C 0.07 0.74 2.75 -67.71 -0.19 0.55 16 13 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 14 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 15 N -0.66 -9.56 5.31 -107.99 -0.57 -10.14 16 16 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 17 C 0.44 9.82 7.82 -10.99 -0.09 9.73 16 18 O -0.58 -15.21 15.78 5.55 0.09 -15.12 16 19 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 24 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C -0.08 -0.89 9.54 -39.19 -0.37 -1.27 16 29 C -0.12 -1.27 8.69 -39.64 -0.34 -1.62 16 30 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 37 H 0.13 0.94 7.94 -52.49 -0.42 0.53 16 38 H 0.13 1.53 7.65 -52.49 -0.40 1.13 16 39 H 0.41 5.04 6.17 -40.82 -0.25 4.79 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 43 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.35 5.54 8.17 -39.30 -0.32 5.22 16 46 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 47 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 48 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 49 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 50 H 0.13 1.41 6.41 -52.48 -0.34 1.08 16 51 H 0.13 1.17 7.08 -52.48 -0.37 0.80 16 LS Contribution 420.51 15.07 6.34 6.34 Total: -1.00 -32.22 420.51 -9.36 -41.58 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -8.08 Total: 17.35 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.53 Total: 0.19 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.23 Total: -56.62 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.17 Total: -24.52 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.22 -9.36 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662398273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.680 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds