Wall clock time and date at job start Wed Apr 1 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35739 * 117.00187 * 2 1 4 4 C 1.39291 * 120.84368 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09021 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82668 * 359.97438 * 5 4 3 7 7 C 1.31946 * 121.86343 * 359.72505 * 6 5 4 8 8 C 1.37997 * 120.81999 * 0.54350 * 7 6 5 9 9 C 1.50697 * 120.45528 * 179.75274 * 8 7 6 10 10 C 1.50706 * 109.47109 * 264.71799 * 9 8 7 11 11 O 1.21283 * 119.99788 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99836 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.60689 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77131 * 233.57988 * 13 12 10 15 15 C 1.53039 * 109.33748 * 305.41286 * 14 13 12 16 16 C 1.53045 * 109.53694 * 61.35198 * 15 14 13 17 17 H 1.08993 * 109.49902 * 58.61908 * 16 15 14 18 18 C 1.53003 * 109.49562 * 178.68194 * 16 15 14 19 19 H 1.08998 * 109.47042 * 59.99992 * 18 16 15 20 20 C 1.52998 * 109.47016 * 299.99817 * 18 16 15 21 21 N 1.46504 * 109.46948 * 179.97438 * 18 16 15 22 22 C 1.36935 * 119.99807 * 205.00239 * 21 18 16 23 23 H 1.08001 * 120.00018 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99992 * 180.02562 * 22 21 18 25 25 N 1.31623 * 119.99618 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00100 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47242 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47468 * 119.99828 * 26 24 22 29 29 H 1.48498 * 109.47268 * 239.99844 * 26 24 22 30 30 C 1.46928 * 120.62574 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47232 * 300.00492 * 1 2 3 33 33 H 1.09005 * 109.47043 * 60.00130 * 1 2 3 34 34 H 1.07994 * 120.45489 * 0.04046 * 4 3 2 35 35 H 1.08000 * 119.59052 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.59411 * 180.29164 * 7 6 5 37 37 H 1.09005 * 109.47247 * 144.71708 * 9 8 7 38 38 H 1.09005 * 109.47173 * 24.71512 * 9 8 7 39 39 H 1.08996 * 109.56502 * 113.80682 * 13 12 10 40 40 H 1.09001 * 109.61713 * 353.38104 * 13 12 10 41 41 H 1.09002 * 109.49815 * 185.44599 * 14 13 12 42 42 H 1.09000 * 109.49595 * 65.37996 * 14 13 12 43 43 H 1.09001 * 109.45915 * 181.36781 * 15 14 13 44 44 H 1.08998 * 109.46049 * 301.34328 * 15 14 13 45 45 H 1.08993 * 109.47197 * 60.00503 * 20 18 16 46 46 H 1.09004 * 109.46733 * 180.02562 * 20 18 16 47 47 H 1.08998 * 109.47359 * 299.99982 * 20 18 16 48 48 H 0.96999 * 119.99837 * 24.99545 * 21 18 16 49 49 H 0.97003 * 119.99574 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58597 * 6.59803 * 30 12 10 51 51 H 1.09001 * 109.69741 * 246.24622 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0059 8 6 3.4346 1.3028 0.0011 9 6 4.2838 0.0579 0.0028 10 6 4.4653 -0.4284 -1.4120 11 8 3.9556 0.1767 -2.3313 12 7 5.1940 -1.5356 -1.6557 13 6 5.8178 -2.2785 -0.5522 14 6 7.3126 -2.4375 -0.8477 15 6 7.4912 -3.0854 -2.2226 16 6 6.8796 -2.1831 -3.2970 17 1 7.3617 -1.2060 -3.2690 18 6 7.0877 -2.8160 -4.6744 19 1 6.6045 -3.7926 -4.7022 20 6 8.5856 -2.9804 -4.9390 21 7 6.5015 -1.9522 -5.7022 22 6 6.0982 -2.4863 -6.8969 23 1 6.2126 -3.5442 -7.0815 24 6 5.5433 -1.6677 -7.8711 25 7 5.4044 -0.3783 -7.6462 26 14 4.9938 -2.3961 -9.5010 27 1 5.2560 -3.8578 -9.5035 28 1 3.5403 -2.1543 -9.6864 29 1 5.7474 -1.7556 -10.6087 30 6 5.3803 -2.0217 -3.0297 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2245 2.3567 -0.0003 35 1 1.4008 4.5174 -0.0019 36 1 5.1000 2.6328 0.0108 37 1 3.7929 -0.7160 0.5929 38 1 5.2578 0.2832 0.4374 39 1 5.3556 -3.2620 -0.4669 40 1 5.6861 -1.7287 0.3797 41 1 7.7689 -3.0693 -0.0857 42 1 7.7906 -1.4579 -0.8423 43 1 8.5536 -3.2216 -2.4246 44 1 6.9920 -4.0543 -2.2351 45 1 9.0213 -3.6233 -4.1743 46 1 8.7338 -3.4308 -5.9205 47 1 9.0688 -2.0038 -4.9112 48 1 6.3991 -1.0020 -5.5365 49 1 5.0163 0.1936 -8.3268 50 1 4.9594 -1.3022 -3.7320 51 1 4.8822 -2.9838 -3.1498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667332390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:40 Heat of formation + Delta-G solvation = -29.463928 kcal Electronic energy + Delta-G solvation = -31424.058829 eV Core-core repulsion = 27323.934397 eV Total energy + Delta-G solvation = -4100.124432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97336 -39.85796 -38.34506 -37.68429 -35.37323 -33.50690 -32.83576 -31.69901 -31.34663 -30.00994 -28.61414 -27.92751 -27.47293 -25.20531 -23.92491 -23.06115 -23.05404 -22.38150 -20.97493 -19.53024 -18.85572 -18.39961 -17.31438 -17.25616 -16.87343 -16.05024 -15.86434 -15.27055 -15.07788 -14.91762 -14.78669 -14.42814 -14.34886 -14.11988 -13.73396 -13.68431 -13.43963 -13.20245 -13.02491 -12.88222 -12.69869 -12.45211 -12.30447 -11.97996 -11.94761 -11.77433 -11.38463 -11.29667 -11.04200 -10.94653 -10.82535 -10.66997 -10.53845 -10.20683 -10.09144 -9.80074 -9.65712 -9.58099 -9.49092 -9.22475 -8.85645 -8.80545 -8.34526 -6.87105 -5.67042 -2.96307 0.95672 1.24688 2.88272 2.92487 3.18530 3.48261 3.53086 3.55981 3.72711 4.27948 4.47383 4.61027 4.62946 4.68461 4.71255 4.82260 4.87305 4.91211 4.95351 5.04904 5.09487 5.15836 5.24223 5.30359 5.39227 5.42104 5.47986 5.59531 5.64813 5.75188 5.77671 5.84197 5.86368 5.91235 5.97640 6.06261 6.17144 6.24556 6.26844 6.41309 6.48639 6.54405 6.58855 6.78438 6.83541 6.96929 6.99255 7.15282 7.65455 7.77750 7.91088 8.46002 8.50399 9.61519 10.19928 10.54192 11.55198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.003108 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.552677 B = 9005.675132 C =10598.805329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.148 4.148 9 C -0.087 4.087 10 C 0.513 3.487 11 O -0.523 6.523 12 N -0.613 5.613 13 C 0.107 3.893 14 C -0.134 4.134 15 C -0.115 4.115 16 C -0.102 4.102 17 H 0.069 0.931 18 C 0.180 3.820 19 H 0.046 0.954 20 C -0.164 4.164 21 N -0.724 5.724 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 C 0.124 3.876 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.105 0.895 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -0.828 24.402 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.024 4.024 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.151 4.151 9 C -0.127 4.127 10 C 0.300 3.700 11 O -0.398 6.398 12 N -0.347 5.347 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.123 4.123 17 H 0.088 0.912 18 C 0.070 3.930 19 H 0.064 0.936 20 C -0.225 4.225 21 N -0.366 5.366 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.734 3.266 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 C 0.002 3.998 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.124 0.876 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.113 -0.024 23.738 24.091 hybrid contribution -0.999 -0.832 -1.006 1.644 sum -5.112 -0.856 22.732 23.316 Atomic orbital electron populations 1.23133 0.77790 1.04387 1.01566 1.86061 1.21858 1.26273 1.87478 1.19089 0.91819 0.84678 0.91455 1.22162 1.01419 0.93199 1.11531 1.22521 0.90346 0.96894 0.92594 1.67720 1.07091 1.31883 1.15165 1.22504 1.00199 0.86129 0.92198 1.19743 0.90849 0.96467 1.08052 1.20431 1.00566 0.95816 0.95937 1.20395 0.78597 0.80193 0.90770 1.90784 1.47424 1.55598 1.45964 1.48180 1.51360 1.26823 1.08331 1.21726 0.93535 0.96865 0.89548 1.21926 0.95534 1.01641 0.98133 1.21623 1.01393 0.98710 0.93535 1.21748 0.95189 0.99635 0.95692 0.91250 1.20172 0.92079 0.94149 0.86641 0.93613 1.22480 0.99166 1.00366 1.00439 1.42462 1.73013 1.07440 1.13656 1.19236 1.32945 0.93007 0.91731 0.91273 1.24734 1.02082 0.95531 0.98515 1.69686 1.50436 1.03189 1.34340 0.86180 0.78053 0.77977 0.84357 1.20638 1.21980 1.21978 1.21648 0.96058 1.00586 0.81496 0.87886 0.92486 0.92179 0.84445 0.82618 0.82295 0.87874 0.87940 0.91493 0.90238 0.91057 0.91564 0.91258 0.91937 0.94298 0.92931 0.93630 0.78182 0.93612 0.87627 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.31 -3.70 9.77 -18.93 -0.18 -3.89 16 3 C 0.18 2.35 6.70 -38.82 -0.26 2.09 16 4 C -0.26 -2.89 9.11 -39.30 -0.36 -3.25 16 5 C 0.13 1.52 11.17 -17.60 -0.20 1.32 16 6 N -0.51 -6.84 10.36 -13.33 -0.14 -6.98 16 7 C 0.15 1.87 10.83 -17.59 -0.19 1.68 16 8 C -0.15 -1.92 4.40 -104.34 -0.46 -2.38 16 9 C -0.09 -0.98 3.95 -29.03 -0.11 -1.10 16 10 C 0.51 8.18 7.69 -10.98 -0.08 8.10 16 11 O -0.52 -11.17 15.45 5.56 0.09 -11.09 16 12 N -0.61 -8.86 2.97 -172.79 -0.51 -9.37 16 13 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 14 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 15 C -0.11 -1.39 4.85 -26.69 -0.13 -1.52 16 16 C -0.10 -1.68 1.97 -90.52 -0.18 -1.86 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 18 C 0.18 3.54 2.47 -67.93 -0.17 3.37 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 C -0.16 -2.95 9.14 37.16 0.34 -2.61 16 21 N -0.72 -18.38 4.52 -53.42 -0.24 -18.62 16 22 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 26 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 C 0.12 2.19 5.47 -3.73 -0.02 2.17 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 33 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 34 H 0.14 1.12 6.47 -52.49 -0.34 0.78 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 0.99 7.57 -51.93 -0.39 0.60 16 38 H 0.10 0.84 7.61 -51.93 -0.40 0.45 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.57 6.40 -51.93 -0.33 0.23 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.38 10.66 7.62 -40.82 -0.31 10.35 16 49 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 50 H 0.11 2.40 6.52 -51.93 -0.34 2.06 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -36.65 405.98 -8.60 -45.25 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.16 Total: 9.53 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.26 Total: -0.52 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.17 Total: -63.39 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.10 Total: -14.97 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.65 -8.60 -45.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds