Wall clock time and date at job start Wed Apr 1 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35739 * 117.00187 * 2 1 4 4 C 1.39291 * 120.84368 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09021 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82668 * 359.97438 * 5 4 3 7 7 C 1.31946 * 121.86343 * 359.72505 * 6 5 4 8 8 C 1.37997 * 120.81999 * 0.54350 * 7 6 5 9 9 C 1.50697 * 120.45528 * 179.75274 * 8 7 6 10 10 C 1.50706 * 109.47109 * 264.71799 * 9 8 7 11 11 O 1.21283 * 119.99788 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99836 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.60689 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77131 * 233.57988 * 13 12 10 15 15 C 1.53039 * 109.33748 * 305.41286 * 14 13 12 16 16 C 1.53045 * 109.53694 * 61.35198 * 15 14 13 17 17 H 1.08993 * 109.49902 * 58.61908 * 16 15 14 18 18 C 1.53003 * 109.49562 * 178.68194 * 16 15 14 19 19 H 1.08998 * 109.47042 * 59.99992 * 18 16 15 20 20 C 1.52998 * 109.47016 * 299.99817 * 18 16 15 21 21 N 1.46504 * 109.46948 * 179.97438 * 18 16 15 22 22 C 1.36935 * 119.99807 * 205.00239 * 21 18 16 23 23 H 1.08001 * 120.00018 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99992 * 180.02562 * 22 21 18 25 25 N 1.31623 * 119.99618 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00100 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47242 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47468 * 119.99828 * 26 24 22 29 29 H 1.48498 * 109.47268 * 239.99844 * 26 24 22 30 30 C 1.46928 * 120.62574 * 180.02562 * 12 10 9 31 31 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47232 * 300.00492 * 1 2 3 33 33 H 1.09005 * 109.47043 * 60.00130 * 1 2 3 34 34 H 1.07994 * 120.45489 * 0.04046 * 4 3 2 35 35 H 1.08000 * 119.59052 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.59411 * 180.29164 * 7 6 5 37 37 H 1.09005 * 109.47247 * 144.71708 * 9 8 7 38 38 H 1.09005 * 109.47173 * 24.71512 * 9 8 7 39 39 H 1.08996 * 109.56502 * 113.80682 * 13 12 10 40 40 H 1.09001 * 109.61713 * 353.38104 * 13 12 10 41 41 H 1.09002 * 109.49815 * 185.44599 * 14 13 12 42 42 H 1.09000 * 109.49595 * 65.37996 * 14 13 12 43 43 H 1.09001 * 109.45915 * 181.36781 * 15 14 13 44 44 H 1.08998 * 109.46049 * 301.34328 * 15 14 13 45 45 H 1.08993 * 109.47197 * 60.00503 * 20 18 16 46 46 H 1.09004 * 109.46733 * 180.02562 * 20 18 16 47 47 H 1.08998 * 109.47359 * 299.99982 * 20 18 16 48 48 H 0.96999 * 119.99837 * 24.99545 * 21 18 16 49 49 H 0.97003 * 119.99574 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58597 * 6.59803 * 30 12 10 51 51 H 1.09001 * 109.69741 * 246.24622 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0059 8 6 3.4346 1.3028 0.0011 9 6 4.2838 0.0579 0.0028 10 6 4.4653 -0.4284 -1.4120 11 8 3.9556 0.1767 -2.3313 12 7 5.1940 -1.5356 -1.6557 13 6 5.8178 -2.2785 -0.5522 14 6 7.3126 -2.4375 -0.8477 15 6 7.4912 -3.0854 -2.2226 16 6 6.8796 -2.1831 -3.2970 17 1 7.3617 -1.2060 -3.2690 18 6 7.0877 -2.8160 -4.6744 19 1 6.6045 -3.7926 -4.7022 20 6 8.5856 -2.9804 -4.9390 21 7 6.5015 -1.9522 -5.7022 22 6 6.0982 -2.4863 -6.8969 23 1 6.2126 -3.5442 -7.0815 24 6 5.5433 -1.6677 -7.8711 25 7 5.4044 -0.3783 -7.6462 26 14 4.9938 -2.3961 -9.5010 27 1 5.2560 -3.8578 -9.5035 28 1 3.5403 -2.1543 -9.6864 29 1 5.7474 -1.7556 -10.6087 30 6 5.3803 -2.0217 -3.0297 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2245 2.3567 -0.0003 35 1 1.4008 4.5174 -0.0019 36 1 5.1000 2.6328 0.0108 37 1 3.7929 -0.7160 0.5929 38 1 5.2578 0.2832 0.4374 39 1 5.3556 -3.2620 -0.4669 40 1 5.6861 -1.7287 0.3797 41 1 7.7689 -3.0693 -0.0857 42 1 7.7906 -1.4579 -0.8423 43 1 8.5536 -3.2216 -2.4246 44 1 6.9920 -4.0543 -2.2351 45 1 9.0213 -3.6233 -4.1743 46 1 8.7338 -3.4308 -5.9205 47 1 9.0688 -2.0038 -4.9112 48 1 6.3991 -1.0020 -5.5365 49 1 5.0163 0.1936 -8.3268 50 1 4.9594 -1.3022 -3.7320 51 1 4.8822 -2.9838 -3.1498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667332390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:39 Heat of formation + Delta-G solvation = -55.025120 kcal Electronic energy + Delta-G solvation = -31425.167245 eV Core-core repulsion = 27323.934397 eV Total energy + Delta-G solvation = -4101.232848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89699 -40.99818 -39.21442 -39.00363 -36.92174 -34.75254 -34.28630 -33.07687 -32.21324 -31.49680 -30.13904 -28.91098 -28.35516 -26.50792 -25.61741 -24.39992 -23.91877 -23.37268 -22.20719 -21.03503 -19.92043 -19.27444 -19.15340 -18.19558 -18.17624 -17.06748 -16.76957 -16.75571 -16.35530 -15.96133 -15.87392 -15.60591 -15.54911 -15.28544 -15.20246 -14.90335 -14.46533 -14.39896 -14.23537 -14.05294 -13.94053 -13.82265 -13.38436 -13.25117 -13.02244 -12.86285 -12.82393 -12.54243 -12.49888 -12.35511 -12.15531 -12.10425 -11.94338 -11.79150 -11.64595 -11.35084 -11.17012 -10.98391 -10.82202 -10.54360 -10.11533 -9.73437 -9.55919 -8.99376 -7.92833 -5.21357 0.06827 0.33695 1.43005 1.44807 1.54513 1.69598 2.07015 2.16015 2.55254 2.81715 3.40796 3.45009 3.62861 3.67367 3.80871 3.81162 3.90627 3.93160 4.01649 4.17318 4.18173 4.25337 4.30584 4.31222 4.35479 4.40434 4.47262 4.58274 4.62429 4.65128 4.67907 4.74684 4.83270 4.88738 4.92177 4.97195 4.99350 5.05286 5.05805 5.09958 5.21848 5.30382 5.41088 5.50599 5.56296 5.57480 5.59978 5.66952 6.17935 6.28280 6.52201 7.01394 7.27384 7.33220 8.11998 8.33398 9.31050 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.003108 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.552677 B = 9005.675132 C =10598.805329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.166 3.834 4 C -0.264 4.264 5 C 0.123 3.877 6 N -0.534 5.534 7 C 0.131 3.869 8 C -0.168 4.168 9 C -0.073 4.073 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.609 5.609 13 C 0.098 3.902 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.088 4.088 17 H 0.049 0.951 18 C 0.171 3.829 19 H 0.045 0.955 20 C -0.153 4.153 21 N -0.738 5.738 22 C -0.231 4.231 23 H 0.078 0.922 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.970 3.030 27 H -0.261 1.261 28 H -0.299 1.299 29 H -0.294 1.294 30 C 0.132 3.868 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.367 0.633 49 H 0.247 0.753 50 H 0.044 0.956 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -3.046 27.362 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.112 3.888 4 C -0.285 4.285 5 C -0.033 4.033 6 N -0.246 5.246 7 C -0.024 4.024 8 C -0.171 4.171 9 C -0.113 4.113 10 C 0.295 3.705 11 O -0.472 6.472 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.166 4.166 15 C -0.147 4.147 16 C -0.109 4.109 17 H 0.068 0.932 18 C 0.063 3.937 19 H 0.063 0.937 20 C -0.213 4.213 21 N -0.378 5.378 22 C -0.363 4.363 23 H 0.096 0.904 24 C -0.273 4.273 25 N -0.625 5.625 26 Si 0.799 3.201 27 H -0.185 1.185 28 H -0.226 1.226 29 H -0.222 1.222 30 C 0.009 3.991 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.182 0.818 35 H 0.201 0.799 36 H 0.191 0.809 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.198 0.802 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.372 -2.332 26.768 27.080 hybrid contribution -1.251 -0.205 -1.865 2.255 sum -4.623 -2.537 24.903 25.455 Atomic orbital electron populations 1.23414 0.75942 1.05868 1.02493 1.86023 1.23885 1.26185 1.87432 1.19404 0.92318 0.85488 0.91590 1.22480 1.02819 0.92572 1.10585 1.23050 0.90057 0.98302 0.91849 1.67729 1.08225 1.32466 1.16193 1.22822 1.01076 0.86246 0.92291 1.19997 0.91507 0.97073 1.08508 1.20455 1.02507 0.95660 0.92650 1.21311 0.77416 0.79708 0.92100 1.90755 1.50260 1.57757 1.48399 1.48285 1.51037 1.26760 1.08088 1.22170 0.93563 0.97617 0.88981 1.21930 0.95303 1.02063 0.97270 1.21623 1.01632 0.98127 0.93353 1.21583 0.94300 0.99525 0.95449 0.93233 1.20496 0.92865 0.93284 0.87047 0.93655 1.22315 0.97462 1.00639 1.00849 1.42710 1.73473 1.07253 1.14332 1.19664 1.30920 0.93282 0.92435 0.90415 1.25574 1.03489 0.95928 1.02338 1.69877 1.52543 1.04748 1.35292 0.85112 0.76850 0.78181 0.79918 1.18518 1.22618 1.22162 1.21241 0.96675 0.98460 0.82762 0.86251 0.90084 0.92649 0.81802 0.79870 0.80893 0.85630 0.84310 0.89879 0.86705 0.87056 0.91906 0.90018 0.90832 0.89945 0.94791 0.94539 0.80210 0.94430 0.93734 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 113.37 1.12 1.36 16 2 O -0.32 -7.64 9.77 -90.63 -0.89 -8.53 16 3 C 0.17 4.21 6.70 22.76 0.15 4.36 16 4 C -0.26 -5.67 9.11 22.45 0.20 -5.47 16 5 C 0.12 2.77 11.17 84.60 0.95 3.71 16 6 N -0.53 -14.49 10.36 -196.09 -2.03 -16.52 16 7 C 0.13 3.38 10.83 84.62 0.92 4.30 16 8 C -0.17 -4.30 4.40 -19.68 -0.09 -4.38 16 9 C -0.07 -1.53 3.95 29.10 0.12 -1.41 16 10 C 0.50 16.28 7.69 87.66 0.67 16.96 16 11 O -0.59 -27.03 15.45 -3.04 -0.05 -27.07 16 12 N -0.61 -17.25 2.97 -818.96 -2.43 -19.68 16 13 C 0.10 1.55 6.34 86.36 0.55 2.10 16 14 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 15 C -0.11 -2.29 4.85 30.62 0.15 -2.14 16 16 C -0.09 -2.89 1.97 -10.73 -0.02 -2.91 16 17 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 18 C 0.17 6.77 2.47 44.99 0.11 6.88 16 19 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 20 C -0.15 -5.32 9.14 71.98 0.66 -4.66 16 21 N -0.74 -39.09 4.52 -322.93 -1.46 -40.55 16 22 C -0.23 -13.35 9.93 84.03 0.83 -12.52 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 24 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 25 N -0.97 -64.20 13.06 21.65 0.28 -63.92 16 26 Si 0.97 48.63 29.55 68.60 2.03 50.65 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 29 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 30 C 0.13 4.85 5.47 86.35 0.47 5.32 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 0.78 7.71 -2.39 -0.02 0.76 16 33 H 0.05 0.85 7.71 -2.38 -0.02 0.84 16 34 H 0.16 2.43 6.47 -2.91 -0.02 2.41 16 35 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.13 2.06 7.57 -2.38 -0.02 2.04 16 38 H 0.14 1.83 7.61 -2.38 -0.02 1.81 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.07 5.93 -2.39 -0.01 1.06 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.55 6.36 -2.39 -0.02 1.53 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 2.14 6.40 -2.39 -0.02 2.12 16 46 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.37 21.76 7.62 -92.71 -0.71 21.05 16 49 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 50 H 0.04 2.20 6.52 -2.39 -0.02 2.18 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -87.76 405.98 3.12 -84.64 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.23 Total: 35.66 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 7.44 Total: 5.33 kcal Atomic # 7 Polarization: -135.03 SS G_CDS: -5.64 Total: -140.68 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.93 Total: -35.60 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.65 kcal Total: -87.76 3.12 -84.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.610 kcal (2) G-P(sol) polarization free energy of solvation -87.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds