Wall clock time and date at job start Wed Apr 1 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 116.99898 * 2 1 4 4 C 1.39280 * 120.84429 * 359.97009 * 3 2 1 5 5 C 1.37957 * 119.08857 * 180.02562 * 4 3 2 6 6 N 1.31970 * 120.82417 * 0.02562 * 5 4 3 7 7 C 1.31947 * 121.86615 * 359.72530 * 6 5 4 8 8 C 1.37997 * 120.81688 * 0.54148 * 7 6 5 9 9 C 1.50703 * 120.45208 * 179.75085 * 8 7 6 10 10 C 1.50701 * 109.47064 * 264.71832 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.52760 * 109.00903 * 233.58159 * 13 12 10 15 15 C 1.53040 * 109.38219 * 305.58856 * 14 13 12 16 16 C 1.53042 * 109.53627 * 61.23932 * 15 14 13 17 17 H 1.08998 * 109.49938 * 58.59037 * 16 15 14 18 18 C 1.53008 * 109.52297 * 178.66479 * 16 15 14 19 19 H 1.08999 * 109.46911 * 304.85279 * 18 16 15 20 20 C 1.52998 * 109.46963 * 64.85780 * 18 16 15 21 21 N 1.46498 * 109.46698 * 184.85486 * 18 16 15 22 22 C 1.36943 * 119.99809 * 155.00360 * 21 18 16 23 23 H 1.08010 * 119.99628 * 359.97438 * 22 21 18 24 24 C 1.38808 * 120.00477 * 180.02562 * 22 21 18 25 25 N 1.31623 * 119.99881 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00523 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47385 * 59.99578 * 26 24 22 28 28 H 1.48497 * 109.47533 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46849 * 299.99836 * 26 24 22 30 30 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 31 31 H 1.08997 * 109.47497 * 300.00322 * 1 2 3 32 32 H 1.09003 * 109.47349 * 60.00694 * 1 2 3 33 33 H 1.09002 * 109.47622 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.45876 * 0.04989 * 4 3 2 35 35 H 1.08008 * 119.58488 * 179.97438 * 5 4 3 36 36 H 1.07993 * 119.59329 * 180.28777 * 7 6 5 37 37 H 1.09002 * 109.47152 * 144.71924 * 9 8 7 38 38 H 1.09001 * 109.46980 * 24.72025 * 9 8 7 39 39 H 1.08996 * 109.58649 * 353.41979 * 13 12 10 40 40 H 1.09004 * 109.58204 * 113.84425 * 13 12 10 41 41 H 1.09000 * 109.56394 * 185.56047 * 14 13 12 42 42 H 1.09001 * 109.38512 * 65.51568 * 14 13 12 43 43 H 1.09001 * 109.46468 * 301.22386 * 15 14 13 44 44 H 1.08997 * 109.46301 * 181.26105 * 15 14 13 45 45 H 1.09004 * 109.47114 * 299.99923 * 20 18 16 46 46 H 1.09005 * 109.47366 * 59.99761 * 20 18 16 47 47 H 1.08997 * 109.47162 * 179.97438 * 20 18 16 48 48 H 0.96995 * 120.00993 * 334.99716 * 21 18 16 49 49 H 0.97000 * 120.00247 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58410 * 246.15856 * 30 12 10 51 51 H 1.09001 * 109.58875 * 6.43498 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3886 -0.0006 5 6 1.9676 3.5981 -0.0011 6 7 3.2864 3.6457 -0.0016 7 6 4.0230 2.5510 0.0039 8 6 3.4345 1.3029 -0.0009 9 6 4.2838 0.0579 -0.0003 10 6 4.4642 -0.4278 -1.4155 11 8 3.9537 0.1777 -2.3341 12 7 5.1936 -1.5344 -1.6603 13 6 5.8239 -2.2743 -0.5586 14 6 7.3140 -2.4340 -0.8549 15 6 7.4918 -3.0814 -2.2301 16 6 6.8780 -2.1796 -3.3035 17 1 7.3587 -1.2017 -3.2755 18 6 7.0854 -2.8111 -4.6817 19 1 8.1466 -3.0059 -4.8361 20 6 6.3083 -4.1266 -4.7620 21 7 6.6015 -1.8942 -5.7167 22 6 7.1100 -1.9649 -6.9863 23 1 7.8680 -2.6966 -7.2243 24 6 6.6519 -1.0959 -7.9669 25 7 5.7285 -0.2040 -7.6767 26 14 7.3450 -1.1929 -9.6988 27 1 7.0813 -2.5411 -10.2628 28 1 6.6948 -0.1648 -10.5505 29 1 8.8096 -0.9503 -9.6601 30 6 5.3789 -2.0199 -3.0346 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 0.2244 2.3566 -0.0003 35 1 1.4007 4.5174 -0.0020 36 1 5.0999 2.6328 0.0080 37 1 3.7933 -0.7162 0.5898 38 1 5.2580 0.2830 0.4336 39 1 5.6950 -1.7230 0.3728 40 1 5.3644 -3.2587 -0.4696 41 1 7.7719 -3.0656 -0.0936 42 1 7.7910 -1.4539 -0.8497 43 1 6.9939 -4.0509 -2.2423 44 1 8.5542 -3.2165 -2.4333 45 1 6.6683 -4.8088 -3.9918 46 1 5.2470 -3.9318 -4.6075 47 1 6.4556 -4.5763 -5.7439 48 1 5.9209 -1.2370 -5.5029 49 1 5.4081 0.4031 -8.3620 50 1 4.8822 -2.9831 -3.1519 51 1 4.9540 -1.3020 -3.7362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667332391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:43 Heat of formation + Delta-G solvation = -27.117671 kcal Electronic energy + Delta-G solvation = -31444.023478 eV Core-core repulsion = 27344.000788 eV Total energy + Delta-G solvation = -4100.022690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99513 -39.93916 -38.36460 -37.77180 -35.38714 -33.52388 -32.82507 -31.84085 -31.35979 -29.91238 -28.51876 -27.82365 -27.45842 -25.17480 -24.37450 -23.13059 -23.07452 -22.55591 -21.09183 -19.31618 -18.59189 -18.41834 -17.32472 -17.31894 -16.88124 -16.06845 -15.88637 -15.30393 -15.10782 -14.90148 -14.76830 -14.53148 -14.42905 -14.09598 -13.78940 -13.70291 -13.53462 -13.28194 -13.10937 -12.85857 -12.63669 -12.47681 -12.41347 -12.04252 -11.85130 -11.78249 -11.49332 -11.39446 -11.06382 -10.95993 -10.79608 -10.58237 -10.38949 -10.21989 -10.17180 -9.85793 -9.68160 -9.60462 -9.47488 -9.24019 -8.84302 -8.82511 -8.35061 -6.87927 -5.66574 -2.96414 0.94373 1.23300 2.84719 2.90372 3.14705 3.48863 3.52874 3.54667 3.71196 4.26620 4.46105 4.59597 4.62552 4.66287 4.69337 4.80487 4.85495 4.89326 4.94796 5.03673 5.08282 5.14061 5.22143 5.28950 5.37936 5.40571 5.46883 5.58254 5.65059 5.71620 5.76302 5.81228 5.87816 5.90333 5.92347 6.00932 6.13004 6.18209 6.29111 6.39974 6.42309 6.47412 6.63349 6.70407 6.83288 6.95472 6.97235 7.17744 7.60685 7.76634 7.90163 8.41807 8.50936 9.61586 10.20344 10.54331 11.55400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.002940 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.816207 B = 9522.590180 C =10932.858298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.148 4.148 9 C -0.087 4.087 10 C 0.514 3.486 11 O -0.524 6.524 12 N -0.612 5.612 13 C 0.107 3.893 14 C -0.135 4.135 15 C -0.114 4.114 16 C -0.104 4.104 17 H 0.073 0.927 18 C 0.181 3.819 19 H 0.048 0.952 20 C -0.169 4.169 21 N -0.725 5.725 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 C 0.117 3.883 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -2.083 24.629 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.283 4.283 5 C -0.023 4.023 6 N -0.218 5.218 7 C -0.010 4.010 8 C -0.151 4.151 9 C -0.127 4.127 10 C 0.301 3.699 11 O -0.399 6.399 12 N -0.346 5.346 13 C -0.016 4.016 14 C -0.173 4.173 15 C -0.152 4.152 16 C -0.124 4.124 17 H 0.092 0.908 18 C 0.070 3.930 19 H 0.066 0.934 20 C -0.229 4.229 21 N -0.367 5.367 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 C -0.005 4.005 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.447 -1.183 23.949 24.829 hybrid contribution -0.588 -0.635 -1.036 1.350 sum -7.034 -1.818 22.913 24.037 Atomic orbital electron populations 1.23131 0.77801 1.04370 1.01576 1.86059 1.21846 1.26279 1.87509 1.19081 0.91803 0.84672 0.91506 1.22162 1.01413 0.93195 1.11542 1.22530 0.90345 0.96904 0.92559 1.67720 1.07094 1.31888 1.15124 1.22513 1.00224 0.86125 0.92131 1.19742 0.90847 0.96459 1.08094 1.20428 1.00618 0.95833 0.95859 1.20408 0.78581 0.80090 0.90818 1.90776 1.47573 1.55510 1.46046 1.48163 1.51170 1.27015 1.08265 1.21633 0.93526 0.96891 0.89532 1.21855 0.95564 1.01731 0.98170 1.21599 1.01142 0.98893 0.93539 1.21772 0.95065 0.99831 0.95700 0.90831 1.20168 0.96577 0.89632 0.86622 0.93390 1.22578 1.00788 0.99095 1.00469 1.42496 1.48046 1.39581 1.06607 1.19171 1.17131 1.14168 0.86682 0.91342 1.24746 0.99390 0.98633 0.98125 1.69671 1.32129 1.22750 1.33186 0.86310 0.78264 0.76970 0.84870 1.21378 1.21756 1.21353 1.21808 0.96514 1.00342 0.81804 0.92488 0.92180 0.87897 0.84438 0.82608 0.82278 0.87835 0.87896 0.90193 0.91478 0.90975 0.91535 0.91562 0.91673 0.94344 0.93268 0.92932 0.78063 0.93479 0.91332 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.84 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.77 -18.94 -0.18 -3.77 16 3 C 0.18 2.30 6.70 -38.82 -0.26 2.04 16 4 C -0.26 -2.83 9.11 -39.30 -0.36 -3.19 16 5 C 0.13 1.50 11.17 -17.60 -0.20 1.30 16 6 N -0.51 -6.80 10.36 -13.33 -0.14 -6.94 16 7 C 0.15 1.86 10.83 -17.59 -0.19 1.67 16 8 C -0.15 -1.89 4.40 -104.34 -0.46 -2.35 16 9 C -0.09 -0.96 3.96 -29.03 -0.11 -1.08 16 10 C 0.51 8.02 7.69 -10.98 -0.08 7.94 16 11 O -0.52 -10.96 15.45 5.56 0.09 -10.87 16 12 N -0.61 -8.63 2.98 -173.06 -0.52 -9.15 16 13 C 0.11 1.03 6.31 -3.94 -0.02 1.01 16 14 C -0.13 -1.29 6.06 -26.83 -0.16 -1.46 16 15 C -0.11 -1.38 4.89 -26.69 -0.13 -1.51 16 16 C -0.10 -1.71 2.27 -90.52 -0.21 -1.91 16 17 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 18 C 0.18 3.57 2.67 -67.93 -0.18 3.39 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 C -0.17 -3.02 8.77 37.16 0.33 -2.69 16 21 N -0.73 -18.64 5.06 -53.42 -0.27 -18.91 16 22 C -0.24 -6.83 9.93 -15.06 -0.15 -6.97 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.30 13.06 55.49 0.72 -28.57 16 26 Si 0.90 23.02 29.55 -169.99 -5.02 18.00 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C 0.12 1.99 5.18 -3.73 -0.02 1.97 16 31 H 0.06 0.32 7.71 -51.93 -0.40 -0.09 16 32 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.14 1.08 6.47 -52.49 -0.34 0.74 16 35 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 38 H 0.10 0.84 7.60 -51.93 -0.39 0.44 16 39 H 0.08 0.56 5.93 -51.93 -0.31 0.26 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.76 6.63 -51.93 -0.34 0.42 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.56 6.59 -51.93 -0.34 0.21 16 46 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.38 10.74 6.47 -40.82 -0.26 10.48 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 50 H 0.07 1.13 6.06 -51.93 -0.31 0.81 16 51 H 0.10 2.13 5.82 -51.93 -0.30 1.83 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -36.93 400.97 -8.49 -45.42 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.90 Total: 9.88 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.31 Total: -1.13 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.20 Total: -63.57 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.10 Total: -14.64 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.93 -8.49 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.306 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds