Wall clock time and date at job start Wed Apr 1 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 116.99898 * 2 1 4 4 C 1.39280 * 120.84429 * 359.97009 * 3 2 1 5 5 C 1.37957 * 119.08857 * 180.02562 * 4 3 2 6 6 N 1.31970 * 120.82417 * 0.02562 * 5 4 3 7 7 C 1.31947 * 121.86615 * 359.72530 * 6 5 4 8 8 C 1.37997 * 120.81688 * 0.54148 * 7 6 5 9 9 C 1.50703 * 120.45208 * 179.75085 * 8 7 6 10 10 C 1.50701 * 109.47064 * 264.71832 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.52760 * 109.00903 * 233.58159 * 13 12 10 15 15 C 1.53040 * 109.38219 * 305.58856 * 14 13 12 16 16 C 1.53042 * 109.53627 * 61.23932 * 15 14 13 17 17 H 1.08998 * 109.49938 * 58.59037 * 16 15 14 18 18 C 1.53008 * 109.52297 * 178.66479 * 16 15 14 19 19 H 1.08999 * 109.46911 * 304.85279 * 18 16 15 20 20 C 1.52998 * 109.46963 * 64.85780 * 18 16 15 21 21 N 1.46498 * 109.46698 * 184.85486 * 18 16 15 22 22 C 1.36943 * 119.99809 * 155.00360 * 21 18 16 23 23 H 1.08010 * 119.99628 * 359.97438 * 22 21 18 24 24 C 1.38808 * 120.00477 * 180.02562 * 22 21 18 25 25 N 1.31623 * 119.99881 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00523 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47385 * 59.99578 * 26 24 22 28 28 H 1.48497 * 109.47533 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46849 * 299.99836 * 26 24 22 30 30 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 31 31 H 1.08997 * 109.47497 * 300.00322 * 1 2 3 32 32 H 1.09003 * 109.47349 * 60.00694 * 1 2 3 33 33 H 1.09002 * 109.47622 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.45876 * 0.04989 * 4 3 2 35 35 H 1.08008 * 119.58488 * 179.97438 * 5 4 3 36 36 H 1.07993 * 119.59329 * 180.28777 * 7 6 5 37 37 H 1.09002 * 109.47152 * 144.71924 * 9 8 7 38 38 H 1.09001 * 109.46980 * 24.72025 * 9 8 7 39 39 H 1.08996 * 109.58649 * 353.41979 * 13 12 10 40 40 H 1.09004 * 109.58204 * 113.84425 * 13 12 10 41 41 H 1.09000 * 109.56394 * 185.56047 * 14 13 12 42 42 H 1.09001 * 109.38512 * 65.51568 * 14 13 12 43 43 H 1.09001 * 109.46468 * 301.22386 * 15 14 13 44 44 H 1.08997 * 109.46301 * 181.26105 * 15 14 13 45 45 H 1.09004 * 109.47114 * 299.99923 * 20 18 16 46 46 H 1.09005 * 109.47366 * 59.99761 * 20 18 16 47 47 H 1.08997 * 109.47162 * 179.97438 * 20 18 16 48 48 H 0.96995 * 120.00993 * 334.99716 * 21 18 16 49 49 H 0.97000 * 120.00247 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58410 * 246.15856 * 30 12 10 51 51 H 1.09001 * 109.58875 * 6.43498 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3886 -0.0006 5 6 1.9676 3.5981 -0.0011 6 7 3.2864 3.6457 -0.0016 7 6 4.0230 2.5510 0.0039 8 6 3.4345 1.3029 -0.0009 9 6 4.2838 0.0579 -0.0003 10 6 4.4642 -0.4278 -1.4155 11 8 3.9537 0.1777 -2.3341 12 7 5.1936 -1.5344 -1.6603 13 6 5.8239 -2.2743 -0.5586 14 6 7.3140 -2.4340 -0.8549 15 6 7.4918 -3.0814 -2.2301 16 6 6.8780 -2.1796 -3.3035 17 1 7.3587 -1.2017 -3.2755 18 6 7.0854 -2.8111 -4.6817 19 1 8.1466 -3.0059 -4.8361 20 6 6.3083 -4.1266 -4.7620 21 7 6.6015 -1.8942 -5.7167 22 6 7.1100 -1.9649 -6.9863 23 1 7.8680 -2.6966 -7.2243 24 6 6.6519 -1.0959 -7.9669 25 7 5.7285 -0.2040 -7.6767 26 14 7.3450 -1.1929 -9.6988 27 1 7.0813 -2.5411 -10.2628 28 1 6.6948 -0.1648 -10.5505 29 1 8.8096 -0.9503 -9.6601 30 6 5.3789 -2.0199 -3.0346 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 0.2244 2.3566 -0.0003 35 1 1.4007 4.5174 -0.0020 36 1 5.0999 2.6328 0.0080 37 1 3.7933 -0.7162 0.5898 38 1 5.2580 0.2830 0.4336 39 1 5.6950 -1.7230 0.3728 40 1 5.3644 -3.2587 -0.4696 41 1 7.7719 -3.0656 -0.0936 42 1 7.7910 -1.4539 -0.8497 43 1 6.9939 -4.0509 -2.2423 44 1 8.5542 -3.2165 -2.4333 45 1 6.6683 -4.8088 -3.9918 46 1 5.2470 -3.9318 -4.6075 47 1 6.4556 -4.5763 -5.7439 48 1 5.9209 -1.2370 -5.5029 49 1 5.4081 0.4031 -8.3620 50 1 4.8822 -2.9831 -3.1519 51 1 4.9540 -1.3020 -3.7362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667332391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:42 Heat of formation + Delta-G solvation = -53.122854 kcal Electronic energy + Delta-G solvation = -31445.151147 eV Core-core repulsion = 27344.000788 eV Total energy + Delta-G solvation = -4101.150360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90467 -41.05549 -39.23366 -39.05837 -36.91082 -34.77271 -34.26231 -33.16221 -32.21033 -31.51830 -29.82541 -28.87294 -28.36732 -26.36929 -26.07366 -24.62215 -23.91604 -23.50127 -22.28595 -20.64646 -19.75364 -19.30304 -19.18688 -18.19271 -18.17032 -17.11628 -16.78055 -16.67982 -16.33321 -16.07727 -15.85041 -15.66231 -15.50603 -15.32375 -15.20338 -15.05978 -14.49469 -14.45776 -14.28730 -13.97438 -13.91124 -13.89254 -13.32660 -13.25409 -12.99335 -12.85383 -12.80138 -12.64626 -12.49931 -12.33432 -12.19468 -12.05854 -11.85532 -11.78017 -11.71834 -11.36568 -11.16780 -10.93674 -10.84469 -10.54085 -10.11384 -9.73260 -9.53679 -9.01583 -7.92909 -5.22676 0.06826 0.33998 1.43293 1.47500 1.53696 1.68836 2.06552 2.16499 2.55418 2.81703 3.39529 3.45036 3.62773 3.67209 3.81003 3.81674 3.89937 3.96373 3.97315 4.15067 4.17871 4.24047 4.31689 4.32194 4.36410 4.40862 4.43077 4.57455 4.63152 4.65443 4.66620 4.74687 4.75697 4.86859 4.91954 4.94478 4.96418 5.05554 5.10883 5.13742 5.19738 5.26072 5.40608 5.47418 5.53195 5.56482 5.61339 5.70089 6.18481 6.27755 6.50902 7.01636 7.26278 7.32515 8.11796 8.32928 9.30387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.002940 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.816207 B = 9522.590180 C =10932.858298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.167 3.833 4 C -0.263 4.263 5 C 0.123 3.877 6 N -0.535 5.535 7 C 0.130 3.870 8 C -0.167 4.167 9 C -0.073 4.073 10 C 0.505 3.495 11 O -0.591 6.591 12 N -0.609 5.609 13 C 0.099 3.901 14 C -0.129 4.129 15 C -0.109 4.109 16 C -0.091 4.091 17 H 0.042 0.958 18 C 0.171 3.829 19 H 0.047 0.953 20 C -0.157 4.157 21 N -0.742 5.742 22 C -0.237 4.237 23 H 0.078 0.922 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.974 3.026 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.276 1.276 30 C 0.126 3.874 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.172 0.828 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.032 0.968 48 H 0.368 0.632 49 H 0.248 0.752 50 H 0.076 0.924 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -4.296 27.439 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.113 3.887 4 C -0.284 4.284 5 C -0.033 4.033 6 N -0.247 5.247 7 C -0.025 4.025 8 C -0.171 4.171 9 C -0.113 4.113 10 C 0.295 3.705 11 O -0.472 6.472 12 N -0.342 5.342 13 C -0.022 4.022 14 C -0.167 4.167 15 C -0.146 4.146 16 C -0.111 4.111 17 H 0.061 0.939 18 C 0.063 3.937 19 H 0.065 0.935 20 C -0.216 4.216 21 N -0.382 5.382 22 C -0.369 4.369 23 H 0.096 0.904 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.803 3.197 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.202 1.202 30 C 0.003 3.997 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.189 0.811 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.200 0.800 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.651 -3.482 26.829 27.637 hybrid contribution -0.848 -0.009 -1.854 2.039 sum -6.499 -3.491 24.974 26.041 Atomic orbital electron populations 1.23418 0.75923 1.05906 1.02490 1.86023 1.23886 1.26088 1.87422 1.19377 0.92240 0.85514 0.91555 1.22482 1.02838 0.92540 1.10525 1.23057 0.90022 0.98353 0.91863 1.67723 1.08278 1.32488 1.16202 1.22806 1.01024 0.86329 0.92382 1.19989 0.91564 0.97016 1.08503 1.20456 1.02455 0.95703 0.92713 1.21298 0.77486 0.79617 0.92101 1.90748 1.50380 1.57610 1.48418 1.48282 1.50825 1.26936 1.08112 1.22076 0.93304 0.97870 0.88982 1.21861 0.95608 1.01917 0.97310 1.21599 1.01214 0.98493 0.93332 1.21587 0.94762 0.99202 0.95514 0.93906 1.20492 0.96401 0.89827 0.86993 0.93537 1.22393 1.00059 0.98268 1.00889 1.42788 1.47762 1.40397 1.07282 1.19636 1.16224 1.13254 0.87808 0.90377 1.25623 1.00392 0.98918 1.02439 1.69879 1.34373 1.24189 1.34097 0.85199 0.77769 0.76992 0.79755 1.20165 1.22555 1.20200 1.21439 0.96495 0.98873 0.82913 0.90176 0.92588 0.86174 0.81727 0.79890 0.81080 0.85459 0.84491 0.86758 0.89436 0.86961 0.92326 0.89942 0.90921 0.89945 0.94052 0.94858 0.79992 0.94340 0.90638 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.84 113.37 1.12 1.34 16 2 O -0.32 -7.31 9.77 -90.68 -0.89 -8.20 16 3 C 0.17 4.13 6.70 22.76 0.15 4.29 16 4 C -0.26 -5.52 9.11 22.45 0.20 -5.32 16 5 C 0.12 2.73 11.17 84.61 0.95 3.68 16 6 N -0.53 -14.53 10.36 -196.08 -2.03 -16.56 16 7 C 0.13 3.36 10.83 84.62 0.92 4.28 16 8 C -0.17 -4.24 4.40 -19.68 -0.09 -4.33 16 9 C -0.07 -1.51 3.96 29.10 0.12 -1.40 16 10 C 0.51 15.94 7.69 87.66 0.67 16.61 16 11 O -0.59 -26.43 15.45 -3.03 -0.05 -26.48 16 12 N -0.61 -16.72 2.98 -819.82 -2.44 -19.16 16 13 C 0.10 1.51 6.31 86.22 0.54 2.05 16 14 C -0.13 -1.93 6.06 30.53 0.19 -1.74 16 15 C -0.11 -2.30 4.89 30.62 0.15 -2.15 16 16 C -0.09 -3.00 2.27 -10.73 -0.02 -3.02 16 17 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 18 C 0.17 6.84 2.67 44.99 0.12 6.96 16 19 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 20 C -0.16 -5.44 8.77 71.98 0.63 -4.81 16 21 N -0.74 -39.83 5.06 -322.93 -1.63 -41.46 16 22 C -0.24 -13.83 9.93 84.03 0.83 -12.99 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 25 N -0.97 -64.47 13.06 21.65 0.28 -64.19 16 26 Si 0.97 48.53 29.55 68.60 2.03 50.56 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 30 C 0.13 4.42 5.18 86.35 0.45 4.87 16 31 H 0.08 0.72 7.71 -2.39 -0.02 0.70 16 32 H 0.06 0.81 7.71 -2.39 -0.02 0.79 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.17 2.34 6.47 -2.91 -0.02 2.32 16 35 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.13 2.00 7.58 -2.39 -0.02 1.98 16 38 H 0.14 1.81 7.60 -2.39 -0.02 1.79 16 39 H 0.11 1.02 5.93 -2.39 -0.01 1.01 16 40 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.52 6.63 -2.39 -0.02 1.50 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 45 H 0.08 2.13 6.59 -2.38 -0.02 2.11 16 46 H 0.04 1.49 6.23 -2.38 -0.01 1.47 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.37 22.07 6.47 -92.71 -0.60 21.47 16 49 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 50 H 0.08 2.49 6.06 -2.38 -0.01 2.48 16 51 H 0.04 1.93 5.82 -2.39 -0.01 1.92 16 Total: -1.00 -88.18 400.97 3.01 -85.17 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.34 Total: 36.53 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 7.39 Total: 3.80 kcal Atomic # 7 Polarization: -135.55 SS G_CDS: -5.82 Total: -141.38 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.93 Total: -34.67 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -88.18 3.01 -85.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667332391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.046 kcal (2) G-P(sol) polarization free energy of solvation -88.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds