Wall clock time and date at job start Wed Apr 1 2020 04:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47416 * 2 1 4 4 N 1.46505 * 109.47041 * 239.99980 * 2 1 3 5 5 C 1.36938 * 119.99692 * 85.00377 * 4 2 1 6 6 H 1.08005 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47479 * 59.99558 * 9 7 5 11 11 H 1.48505 * 109.47193 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46990 * 299.99284 * 9 7 5 13 13 C 1.53005 * 109.47547 * 120.00286 * 2 1 3 14 14 H 1.08992 * 109.50050 * 180.02562 * 13 2 1 15 15 C 1.53041 * 109.49547 * 300.16235 * 13 2 1 16 16 C 1.53039 * 109.53808 * 181.31427 * 15 13 2 17 17 C 1.53199 * 109.31120 * 298.63469 * 16 15 13 18 18 N 1.46923 * 108.77735 * 54.63094 * 17 16 15 19 19 C 1.34779 * 120.62844 * 126.41046 * 18 17 16 20 20 O 1.21606 * 120.00038 * 174.24967 * 19 18 17 21 21 C 1.47420 * 120.00034 * 354.25149 * 19 18 17 22 22 C 1.36088 * 126.44924 * 173.34587 * 21 19 18 23 23 O 1.34256 * 106.94807 * 179.97438 * 22 21 19 24 24 C 1.34047 * 108.22766 * 0.02562 * 23 22 21 25 25 C 1.50705 * 125.37752 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47015 * 270.02589 * 25 24 23 27 27 C 1.53004 * 117.49859 * 243.62004 * 26 25 24 28 28 C 1.52998 * 60.00048 * 252.51148 * 27 26 25 29 29 N 1.29928 * 109.24696 * 359.73996 * 24 23 22 30 30 C 1.46926 * 118.74136 * 306.39606 * 18 17 16 31 31 H 1.09007 * 109.46737 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47558 * 59.99724 * 1 2 3 33 33 H 1.09004 * 109.47416 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00497 * 265.00449 * 4 2 1 35 35 H 0.97001 * 119.99846 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.45800 * 301.33385 * 15 13 2 37 37 H 1.08998 * 109.45877 * 61.29300 * 15 13 2 38 38 H 1.08995 * 109.49643 * 178.68651 * 16 15 13 39 39 H 1.08997 * 109.49816 * 58.58394 * 16 15 13 40 40 H 1.09006 * 109.58168 * 294.84612 * 17 16 15 41 41 H 1.08996 * 109.58325 * 174.42339 * 17 16 15 42 42 H 1.07998 * 126.52517 * 359.94711 * 22 21 19 43 43 H 1.09000 * 109.47214 * 30.02005 * 25 24 23 44 44 H 1.08994 * 109.47677 * 150.02424 * 25 24 23 45 45 H 1.08998 * 115.55388 * 29.32991 * 26 25 24 46 46 H 1.08995 * 117.49703 * 0.02562 * 27 26 25 47 47 H 1.08999 * 117.49849 * 145.02124 * 27 26 25 48 48 H 1.09007 * 117.49846 * 252.50914 * 28 27 26 49 49 H 1.08997 * 117.51875 * 107.47925 * 28 27 26 50 50 H 1.08998 * 109.58570 * 173.39131 * 30 18 17 51 51 H 1.08997 * 109.58127 * 293.81964 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6112 -0.6619 -3.5093 8 7 2.9242 -1.9389 -3.4502 9 14 2.7890 0.2699 -5.1185 10 1 3.7443 1.3924 -4.9377 11 1 3.2981 -0.6484 -6.1687 12 1 1.4664 0.8066 -5.5284 13 6 2.0400 -0.7213 1.2492 14 1 3.1299 -0.7212 1.2498 15 6 1.5269 -0.0028 2.4992 16 6 2.0634 -0.7041 3.7492 17 6 1.5533 -2.1484 3.7781 18 7 1.9180 -2.8040 2.5148 19 6 2.5956 -3.9691 2.5165 20 8 2.8004 -4.5549 1.4707 21 6 3.0885 -4.5333 3.7862 22 6 3.6712 -5.7511 3.9576 23 8 3.9669 -5.8633 5.2623 24 6 3.5743 -4.7399 5.8794 25 6 3.7218 -4.4562 7.3521 26 6 2.4764 -4.9467 8.0932 27 6 1.6158 -3.8975 8.7999 28 6 2.4815 -4.8557 9.6205 29 7 3.0511 -3.9323 5.0064 30 6 1.5296 -2.1657 1.2497 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6318 -1.1528 35 1 3.2475 -2.3962 -4.2423 36 1 1.8683 1.0324 2.4889 37 1 0.4372 -0.0255 2.5095 38 1 1.7166 -0.1780 4.6386 39 1 3.1531 -0.7035 3.7272 40 1 0.4692 -2.1507 3.8914 41 1 2.0111 -2.6809 4.6117 42 1 3.8594 -6.4873 3.1902 43 1 4.6005 -4.9745 7.7358 44 1 3.8369 -3.3833 7.5057 45 1 1.9647 -5.7965 7.6414 46 1 1.9366 -2.8578 8.7366 47 1 0.5376 -4.0569 8.8130 48 1 1.9728 -5.6455 10.1735 49 1 3.3722 -4.4468 10.0973 50 1 1.9718 -2.7098 0.4152 51 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667346307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:47 Heat of formation + Delta-G solvation = 31.125590 kcal Electronic energy + Delta-G solvation = -31136.334340 eV Core-core repulsion = 27038.837267 eV Total energy + Delta-G solvation = -4097.497073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.71414 -39.93894 -38.09238 -37.74703 -35.56994 -34.91374 -32.81472 -32.12470 -31.73569 -29.68238 -28.34077 -27.81051 -25.79558 -24.51885 -23.30490 -23.10137 -22.83650 -22.27353 -21.25096 -20.91007 -19.66092 -18.53860 -17.70099 -17.14775 -17.04225 -16.74499 -16.17384 -15.70938 -14.97621 -14.74856 -14.69886 -14.66037 -14.42218 -13.97606 -13.83435 -13.66372 -13.49985 -13.24878 -12.98979 -12.90731 -12.62799 -12.33179 -12.25739 -11.97775 -11.80890 -11.55876 -11.48042 -11.40507 -10.91323 -10.89789 -10.79240 -10.53949 -10.51687 -10.36746 -10.26531 -10.14698 -10.12141 -9.90510 -9.54410 -9.38778 -9.24246 -8.82099 -8.30220 -6.86663 -5.65750 -2.95181 0.94900 1.76462 2.27412 3.05930 3.28875 3.34126 3.49656 3.53623 3.53938 3.55209 4.20544 4.37244 4.40832 4.53533 4.63511 4.65901 4.77810 5.02061 5.04739 5.09012 5.15600 5.19711 5.24261 5.30685 5.36802 5.42590 5.45910 5.50935 5.57367 5.64802 5.67069 5.68996 5.78072 5.88561 5.97544 6.02423 6.09294 6.19084 6.24048 6.33453 6.42801 6.47188 6.53959 6.69363 6.76072 6.91559 6.97470 7.19238 7.24018 7.62936 7.77994 8.29056 8.52043 9.62604 10.21367 10.55576 11.56380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002379 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.392714 B =11766.994128 C =12851.683785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.072 0.928 15 C -0.116 4.116 16 C -0.127 4.127 17 C 0.064 3.936 18 N -0.589 5.589 19 C 0.592 3.408 20 O -0.529 6.529 21 C -0.060 4.060 22 C 0.011 3.989 23 O -0.195 6.195 24 C 0.199 3.801 25 C 0.007 3.993 26 C -0.157 4.157 27 C -0.172 4.172 28 C -0.174 4.174 29 N -0.450 5.450 30 C 0.116 3.884 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.147 0.853 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -5.778 29.658 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.578 5.578 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.090 0.910 15 C -0.154 4.154 16 C -0.165 4.165 17 C -0.058 4.058 18 N -0.320 5.320 19 C 0.378 3.622 20 O -0.405 6.405 21 C -0.179 4.179 22 C -0.062 4.062 23 O -0.081 6.081 24 C -0.009 4.009 25 C -0.031 4.031 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.211 4.211 29 N -0.180 5.180 30 C -0.005 4.005 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.163 0.837 42 H 0.248 0.752 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.145 -5.400 29.078 29.597 hybrid contribution 0.311 -0.376 -1.322 1.410 sum -0.834 -5.776 27.756 28.363 Atomic orbital electron populations 1.22568 0.99541 1.00851 0.99920 1.20177 0.91813 0.95262 0.85775 0.93342 1.42516 1.78137 1.10813 1.05299 1.19177 1.36634 0.93784 0.87395 0.91327 1.24750 1.02322 0.95963 0.97992 1.69666 1.50701 1.08566 1.28877 0.86300 0.77673 0.78568 0.83809 1.21395 1.21780 1.21379 1.21758 1.00849 0.94181 0.95388 0.90992 1.21653 1.00768 0.99075 0.93904 1.21825 1.01118 0.95437 0.98106 1.22870 1.00102 0.94620 0.88247 1.47934 1.54311 1.21273 1.08519 1.16851 0.78398 0.81228 0.85709 1.90889 1.58258 1.59991 1.31381 1.21925 1.07895 0.94706 0.93413 1.25316 0.98616 0.99524 0.82791 1.84384 1.63389 1.40054 1.20246 1.26307 0.96438 0.80851 0.97339 1.19725 0.98580 1.03662 0.81148 1.22151 0.98681 1.02350 0.94418 1.23099 0.98239 0.96206 1.03334 1.23020 1.02754 1.02884 0.92424 1.70350 1.18983 1.29550 0.99128 1.21874 0.99968 0.93357 0.85342 0.94241 0.92928 0.93329 0.78051 0.93496 0.91905 0.91592 0.91373 0.91945 0.92626 0.83678 0.75161 0.88184 0.87174 0.87423 0.88134 0.88548 0.88470 0.88344 0.88178 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.79 37.15 0.33 -2.77 16 2 C 0.18 3.67 2.72 -67.93 -0.19 3.48 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.73 -18.78 5.04 -53.42 -0.27 -19.05 16 5 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 9 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.10 -1.78 2.33 -90.50 -0.21 -1.99 16 14 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.12 -1.59 4.77 -26.69 -0.13 -1.72 16 16 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 17 C 0.06 0.83 6.33 -3.71 -0.02 0.81 16 18 N -0.59 -9.56 2.97 -174.03 -0.52 -10.08 16 19 C 0.59 10.22 7.68 -12.52 -0.10 10.12 16 20 O -0.53 -10.99 16.34 5.27 0.09 -10.91 16 21 C -0.06 -0.82 6.72 -83.02 -0.56 -1.38 16 22 C 0.01 0.12 11.95 29.96 0.36 0.48 16 23 O -0.19 -1.93 10.73 6.52 0.07 -1.86 16 24 C 0.20 1.85 7.51 -13.08 -0.10 1.75 16 25 C 0.01 0.04 6.12 -27.88 -0.17 -0.13 16 26 C -0.16 -0.83 5.72 -90.62 -0.52 -1.35 16 27 C -0.17 -0.84 10.18 -26.73 -0.27 -1.11 16 28 C -0.17 -0.70 10.25 -26.73 -0.27 -0.97 16 29 N -0.45 -5.25 7.74 -7.65 -0.06 -5.31 16 30 C 0.12 2.11 5.20 -3.71 -0.02 2.09 16 31 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.90 6.32 -51.93 -0.33 0.57 16 34 H 0.38 10.74 6.16 -40.82 -0.25 10.49 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.86 6.50 -51.93 -0.34 0.53 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.15 1.80 3.67 -76.74 -0.28 1.52 16 42 H 0.23 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.51 7.87 -51.93 -0.41 0.10 16 45 H 0.11 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.10 0.45 8.03 -51.93 -0.42 0.03 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 2.21 5.63 -51.93 -0.29 1.92 16 51 H 0.07 1.25 6.18 -51.93 -0.32 0.92 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -34.55 403.12 -9.20 -43.75 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.01 Total: 9.72 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.28 Total: -1.87 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.12 Total: -62.97 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.16 Total: -12.76 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.55 -9.20 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667346307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.875 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds