Wall clock time and date at job start Wed Apr 1 2020 04:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47416 * 2 1 4 4 N 1.46505 * 109.47041 * 239.99980 * 2 1 3 5 5 C 1.36938 * 119.99692 * 85.00377 * 4 2 1 6 6 H 1.08005 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47479 * 59.99558 * 9 7 5 11 11 H 1.48505 * 109.47193 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46990 * 299.99284 * 9 7 5 13 13 C 1.53005 * 109.47547 * 120.00286 * 2 1 3 14 14 H 1.08992 * 109.50050 * 180.02562 * 13 2 1 15 15 C 1.53041 * 109.49547 * 300.16235 * 13 2 1 16 16 C 1.53039 * 109.53808 * 181.31427 * 15 13 2 17 17 C 1.53199 * 109.31120 * 298.63469 * 16 15 13 18 18 N 1.46923 * 108.77735 * 54.63094 * 17 16 15 19 19 C 1.34779 * 120.62844 * 126.41046 * 18 17 16 20 20 O 1.21606 * 120.00038 * 174.24967 * 19 18 17 21 21 C 1.47420 * 120.00034 * 354.25149 * 19 18 17 22 22 C 1.36088 * 126.44924 * 173.34587 * 21 19 18 23 23 O 1.34256 * 106.94807 * 179.97438 * 22 21 19 24 24 C 1.34047 * 108.22766 * 0.02562 * 23 22 21 25 25 C 1.50705 * 125.37752 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47015 * 270.02589 * 25 24 23 27 27 C 1.53004 * 117.49859 * 243.62004 * 26 25 24 28 28 C 1.52998 * 60.00048 * 252.51148 * 27 26 25 29 29 N 1.29928 * 109.24696 * 359.73996 * 24 23 22 30 30 C 1.46926 * 118.74136 * 306.39606 * 18 17 16 31 31 H 1.09007 * 109.46737 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47558 * 59.99724 * 1 2 3 33 33 H 1.09004 * 109.47416 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00497 * 265.00449 * 4 2 1 35 35 H 0.97001 * 119.99846 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.45800 * 301.33385 * 15 13 2 37 37 H 1.08998 * 109.45877 * 61.29300 * 15 13 2 38 38 H 1.08995 * 109.49643 * 178.68651 * 16 15 13 39 39 H 1.08997 * 109.49816 * 58.58394 * 16 15 13 40 40 H 1.09006 * 109.58168 * 294.84612 * 17 16 15 41 41 H 1.08996 * 109.58325 * 174.42339 * 17 16 15 42 42 H 1.07998 * 126.52517 * 359.94711 * 22 21 19 43 43 H 1.09000 * 109.47214 * 30.02005 * 25 24 23 44 44 H 1.08994 * 109.47677 * 150.02424 * 25 24 23 45 45 H 1.08998 * 115.55388 * 29.32991 * 26 25 24 46 46 H 1.08995 * 117.49703 * 0.02562 * 27 26 25 47 47 H 1.08999 * 117.49849 * 145.02124 * 27 26 25 48 48 H 1.09007 * 117.49846 * 252.50914 * 28 27 26 49 49 H 1.08997 * 117.51875 * 107.47925 * 28 27 26 50 50 H 1.08998 * 109.58570 * 173.39131 * 30 18 17 51 51 H 1.08997 * 109.58127 * 293.81964 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6112 -0.6619 -3.5093 8 7 2.9242 -1.9389 -3.4502 9 14 2.7890 0.2699 -5.1185 10 1 3.7443 1.3924 -4.9377 11 1 3.2981 -0.6484 -6.1687 12 1 1.4664 0.8066 -5.5284 13 6 2.0400 -0.7213 1.2492 14 1 3.1299 -0.7212 1.2498 15 6 1.5269 -0.0028 2.4992 16 6 2.0634 -0.7041 3.7492 17 6 1.5533 -2.1484 3.7781 18 7 1.9180 -2.8040 2.5148 19 6 2.5956 -3.9691 2.5165 20 8 2.8004 -4.5549 1.4707 21 6 3.0885 -4.5333 3.7862 22 6 3.6712 -5.7511 3.9576 23 8 3.9669 -5.8633 5.2623 24 6 3.5743 -4.7399 5.8794 25 6 3.7218 -4.4562 7.3521 26 6 2.4764 -4.9467 8.0932 27 6 1.6158 -3.8975 8.7999 28 6 2.4815 -4.8557 9.6205 29 7 3.0511 -3.9323 5.0064 30 6 1.5296 -2.1657 1.2497 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6318 -1.1528 35 1 3.2475 -2.3962 -4.2423 36 1 1.8683 1.0324 2.4889 37 1 0.4372 -0.0255 2.5095 38 1 1.7166 -0.1780 4.6386 39 1 3.1531 -0.7035 3.7272 40 1 0.4692 -2.1507 3.8914 41 1 2.0111 -2.6809 4.6117 42 1 3.8594 -6.4873 3.1902 43 1 4.6005 -4.9745 7.7358 44 1 3.8369 -3.3833 7.5057 45 1 1.9647 -5.7965 7.6414 46 1 1.9366 -2.8578 8.7366 47 1 0.5376 -4.0569 8.8130 48 1 1.9728 -5.6455 10.1735 49 1 3.3722 -4.4468 10.0973 50 1 1.9718 -2.7098 0.4152 51 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667346307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:46 Heat of formation + Delta-G solvation = 8.408297 kcal Electronic energy + Delta-G solvation = -31137.319436 eV Core-core repulsion = 27038.837267 eV Total energy + Delta-G solvation = -4098.482169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.57354 -41.26092 -39.21282 -38.43958 -37.02526 -36.01998 -34.56653 -33.20692 -32.83947 -31.41360 -29.54747 -28.97671 -26.99616 -26.29741 -24.78308 -24.35614 -23.17307 -23.01793 -22.37814 -21.68990 -20.75058 -19.95792 -19.31298 -18.58571 -17.96009 -17.76258 -17.10691 -16.71239 -16.65439 -16.17525 -15.93080 -15.54290 -15.46605 -15.30779 -15.12091 -14.85421 -14.55522 -14.40738 -14.23345 -14.04737 -13.90497 -13.74000 -13.31702 -13.01345 -12.81685 -12.76007 -12.65932 -12.61327 -12.30960 -12.26187 -12.25099 -12.00613 -11.79949 -11.79794 -11.51705 -11.49300 -11.25085 -11.20298 -10.93295 -10.86283 -10.56509 -10.15672 -9.60809 -9.01098 -7.91851 -5.21573 0.00936 0.85439 1.44326 1.48340 1.48750 1.54598 1.87710 2.12757 2.56188 2.69146 2.96360 3.40200 3.46425 3.72839 3.74566 3.83495 3.88415 3.96096 4.05840 4.10936 4.12560 4.19324 4.26759 4.34821 4.39466 4.42501 4.49826 4.61901 4.65862 4.70146 4.74731 4.76474 4.84324 4.85927 4.90330 4.91998 5.08843 5.11482 5.13090 5.13948 5.20520 5.29783 5.32757 5.36350 5.38588 5.45708 5.53410 5.66182 5.74513 6.24017 6.28889 6.48092 6.98843 7.33727 8.11861 8.33789 9.31445 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002379 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.392714 B =11766.994128 C =12851.683785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.741 5.741 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.975 3.025 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.089 4.089 14 H 0.043 0.957 15 C -0.109 4.109 16 C -0.119 4.119 17 C 0.060 3.940 18 N -0.589 5.589 19 C 0.583 3.417 20 O -0.581 6.581 21 C -0.090 4.090 22 C 0.027 3.973 23 O -0.189 6.189 24 C 0.213 3.787 25 C 0.009 3.991 26 C -0.166 4.166 27 C -0.179 4.179 28 C -0.161 4.161 29 N -0.464 5.464 30 C 0.124 3.876 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.157 0.843 42 H 0.249 0.751 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.051 0.949 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -4.235 33.040 33.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.066 0.934 4 N -0.382 5.382 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.804 3.196 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.202 1.202 13 C -0.109 4.109 14 H 0.062 0.938 15 C -0.147 4.147 16 C -0.157 4.157 17 C -0.061 4.061 18 N -0.319 5.319 19 C 0.372 3.628 20 O -0.461 6.461 21 C -0.208 4.208 22 C -0.047 4.047 23 O -0.075 6.075 24 C 0.005 3.995 25 C -0.028 4.028 26 C -0.185 4.185 27 C -0.216 4.216 28 C -0.198 4.198 29 N -0.193 5.193 30 C 0.002 3.998 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.173 0.827 42 H 0.265 0.735 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.118 0.882 49 H 0.131 0.869 50 H 0.069 0.931 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.677 -3.779 32.531 32.793 hybrid contribution 0.454 -0.869 -2.211 2.419 sum -1.222 -4.648 30.320 30.699 Atomic orbital electron populations 1.22394 0.97311 1.00807 1.01119 1.20460 0.93238 0.94886 0.84969 0.93364 1.42788 1.78522 1.10341 1.06536 1.19626 1.34720 0.94211 0.88314 0.90377 1.25635 1.03227 0.96886 1.01744 1.69868 1.52751 1.10431 1.29358 0.85184 0.78017 0.77184 0.79212 1.20316 1.22511 1.20204 1.21584 0.99056 0.93945 0.96320 0.93802 1.21640 1.01610 0.99297 0.92136 1.21803 1.00336 0.94817 0.98719 1.23165 1.01105 0.95110 0.86754 1.48054 1.53842 1.21136 1.08906 1.17372 0.77859 0.81129 0.86475 1.90849 1.60282 1.61469 1.33543 1.21496 1.10350 0.96082 0.92898 1.25625 0.96708 0.98831 0.83539 1.84437 1.63229 1.40313 1.19566 1.27133 0.94218 0.79806 0.98369 1.20009 0.99576 1.04879 0.78369 1.22078 0.98744 1.02285 0.95410 1.23176 0.98178 0.96590 1.03668 1.23102 1.02917 1.02402 0.91367 1.70204 1.20388 1.30205 0.98544 1.21573 0.99753 0.93340 0.85146 0.90080 0.94578 0.93997 0.79809 0.94272 0.90509 0.89994 0.87586 0.93190 0.91223 0.82689 0.73527 0.85921 0.85777 0.88645 0.87503 0.88981 0.88155 0.86913 0.93064 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 8.79 71.98 0.63 -4.95 16 2 C 0.17 7.08 2.72 44.99 0.12 7.20 16 3 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 4 N -0.74 -39.86 5.04 -322.93 -1.63 -41.49 16 5 C -0.24 -13.79 9.93 84.03 0.83 -12.96 16 6 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 8 N -0.97 -63.91 13.06 21.65 0.28 -63.63 16 9 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C -0.09 -3.15 2.33 -10.71 -0.02 -3.18 16 14 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 15 C -0.11 -2.71 4.77 30.62 0.15 -2.56 16 16 C -0.12 -2.55 6.08 30.67 0.19 -2.37 16 17 C 0.06 1.45 6.33 86.37 0.55 1.99 16 18 N -0.59 -19.59 2.97 -822.77 -2.45 -22.04 16 19 C 0.58 21.17 7.68 86.66 0.67 21.84 16 20 O -0.58 -26.14 16.34 -4.05 -0.07 -26.20 16 21 C -0.09 -2.49 6.72 40.41 0.27 -2.22 16 22 C 0.03 0.59 11.95 67.32 0.80 1.40 16 23 O -0.19 -3.45 10.73 0.42 0.00 -3.44 16 24 C 0.21 3.55 7.51 88.39 0.66 4.21 16 25 C 0.01 0.07 6.12 29.85 0.18 0.26 16 26 C -0.17 -1.36 5.72 -10.79 -0.06 -1.42 16 27 C -0.18 -1.31 10.18 30.59 0.31 -1.00 16 28 C -0.16 -0.83 10.25 30.59 0.31 -0.51 16 29 N -0.46 -10.26 7.74 -293.04 -2.27 -12.53 16 30 C 0.12 4.73 5.20 86.36 0.45 5.18 16 31 H 0.08 2.20 6.46 -2.38 -0.02 2.19 16 32 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.04 1.53 6.32 -2.39 -0.02 1.52 16 34 H 0.37 22.00 6.16 -92.71 -0.57 21.43 16 35 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.81 6.50 -2.39 -0.02 1.80 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.16 3.57 3.67 -51.38 -0.19 3.38 16 42 H 0.25 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.12 0.70 7.87 -2.39 -0.02 0.69 16 45 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 46 H 0.11 0.64 8.03 -2.39 -0.02 0.62 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.05 2.47 5.63 -2.39 -0.01 2.45 16 51 H 0.08 2.78 6.18 -2.39 -0.01 2.77 16 Total: -1.00 -79.81 403.12 2.62 -77.20 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.20 Total: 35.31 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 6.51 Total: 6.32 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -6.06 Total: -139.68 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.06 Total: -29.64 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -79.81 2.62 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667346307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.604 kcal (2) G-P(sol) polarization free energy of solvation -79.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds