Wall clock time and date at job start Wed Apr 1 2020 04:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47013 * 2 1 4 4 N 1.46503 * 109.47000 * 120.00160 * 2 1 3 5 5 C 1.36934 * 119.99637 * 275.00068 * 4 2 1 6 6 H 1.08001 * 120.00395 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99662 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46906 * 90.00320 * 9 7 5 11 11 H 1.48507 * 109.46884 * 210.00071 * 9 7 5 12 12 H 1.48496 * 109.47156 * 329.99889 * 9 7 5 13 13 C 1.52997 * 109.47110 * 240.00273 * 2 1 3 14 14 H 1.09000 * 109.52707 * 299.91518 * 13 2 1 15 15 C 1.53037 * 109.49970 * 60.00240 * 13 2 1 16 16 C 1.53043 * 109.52724 * 181.32491 * 15 13 2 17 17 C 1.53194 * 109.31033 * 298.60754 * 16 15 13 18 18 N 1.46927 * 108.76165 * 54.65970 * 17 16 15 19 19 C 1.34776 * 120.63343 * 126.40580 * 18 17 16 20 20 O 1.21609 * 120.00348 * 174.42078 * 19 18 17 21 21 C 1.47422 * 119.99588 * 354.41546 * 19 18 17 22 22 C 1.36097 * 126.44610 * 173.42578 * 21 19 18 23 23 O 1.34263 * 106.94915 * 179.97438 * 22 21 19 24 24 C 1.34051 * 108.22246 * 0.02562 * 23 22 21 25 25 C 1.50703 * 125.37479 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.46964 * 270.02496 * 25 24 23 27 27 C 1.53006 * 117.49706 * 243.62359 * 26 25 24 28 28 C 1.53002 * 117.50137 * 175.00158 * 26 25 24 29 29 N 1.29934 * 109.24900 * 359.74158 * 24 23 22 30 30 C 1.46924 * 118.73868 * 306.37924 * 18 17 16 31 31 H 1.08993 * 109.47310 * 299.99804 * 1 2 3 32 32 H 1.09004 * 109.46702 * 60.00020 * 1 2 3 33 33 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 34 34 H 0.96998 * 120.00093 * 95.00330 * 4 2 1 35 35 H 0.97005 * 119.99659 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.45754 * 301.33180 * 15 13 2 37 37 H 1.09001 * 109.46237 * 61.30725 * 15 13 2 38 38 H 1.08998 * 109.49766 * 58.57524 * 16 15 13 39 39 H 1.09001 * 109.49929 * 178.67779 * 16 15 13 40 40 H 1.08994 * 109.60309 * 294.87116 * 17 16 15 41 41 H 1.08998 * 109.58791 * 174.43314 * 17 16 15 42 42 H 1.07997 * 126.52737 * 359.94754 * 22 21 19 43 43 H 1.08998 * 109.47247 * 30.02229 * 25 24 23 44 44 H 1.09000 * 109.47508 * 150.01964 * 25 24 23 45 45 H 1.09002 * 115.55358 * 29.32556 * 26 25 24 46 46 H 1.09002 * 117.49519 * 359.97438 * 27 26 25 47 47 H 1.08998 * 117.50071 * 145.02059 * 27 26 25 48 48 H 1.08996 * 117.50061 * 214.97657 * 28 26 25 49 49 H 1.09004 * 117.49747 * 359.97213 * 28 26 25 50 50 H 1.08997 * 109.58697 * 293.82011 * 30 18 17 51 51 H 1.09001 * 109.58848 * 173.39708 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6123 -0.6618 3.5090 8 7 2.9263 -1.9386 3.4496 9 14 2.7913 0.2702 5.1180 10 1 1.5239 0.1790 5.8865 11 1 3.8963 -0.3230 5.9133 12 1 3.0961 1.6954 4.8332 13 6 2.0400 -0.7212 -1.2493 14 1 1.6784 -1.7494 -1.2495 15 6 1.5303 -0.0002 -2.4992 16 6 2.0127 -0.7401 -3.7490 17 6 3.5443 -0.7367 -3.7802 18 7 4.0439 -1.2969 -2.5171 19 6 4.9189 -2.3221 -2.5190 20 8 5.4028 -2.7105 -1.4732 21 6 5.2892 -2.9726 -3.7891 22 6 6.2446 -3.9266 -3.9603 23 8 6.2542 -4.2410 -5.2656 24 6 5.3260 -3.4966 -5.8830 25 6 5.0116 -3.5393 -7.3562 26 6 5.8892 -2.5266 -8.0945 27 6 5.1866 -1.3652 -8.8006 28 6 5.8041 -2.4989 -9.6219 29 7 4.7367 -2.7359 -5.0098 30 6 3.5720 -0.7180 -1.2519 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.2496 -2.3959 4.2416 36 1 0.4405 0.0205 -2.4874 37 1 1.9128 1.0205 -2.5111 38 1 1.6513 -1.7681 -3.7254 39 1 1.6299 -0.2397 -4.6385 40 1 3.9055 0.2852 -3.8948 41 1 3.8942 -1.3458 -4.6137 42 1 6.8753 -4.3498 -3.1926 43 1 5.2091 -4.5398 -7.7410 44 1 3.9616 -3.2913 -7.5111 45 1 6.8600 -2.3268 -7.6409 46 1 4.0991 -1.3230 -8.7395 47 1 5.6950 -0.4012 -8.8116 48 1 6.7187 -2.2807 -10.1731 49 1 5.1231 -3.2026 -10.1008 50 1 3.9355 0.3055 -1.1604 51 1 3.9400 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667346308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:50 Heat of formation + Delta-G solvation = 28.451069 kcal Electronic energy + Delta-G solvation = -31084.875735 eV Core-core repulsion = 26987.262686 eV Total energy + Delta-G solvation = -4097.613049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.70289 -39.86515 -38.08447 -37.65942 -35.55076 -34.92953 -32.81149 -32.12449 -31.63089 -29.76748 -28.39895 -28.06308 -25.58820 -24.44686 -23.22377 -22.86440 -22.82221 -22.17264 -21.24669 -20.74819 -19.55663 -19.24562 -17.59051 -17.12580 -17.00614 -16.74354 -16.16548 -15.67773 -14.99821 -14.79665 -14.71912 -14.56554 -14.28177 -13.99589 -13.81696 -13.63315 -13.37610 -13.25379 -12.94831 -12.86518 -12.59174 -12.25706 -12.24850 -11.99260 -11.97423 -11.49413 -11.42751 -11.17300 -10.92941 -10.88666 -10.80638 -10.64040 -10.61422 -10.51683 -10.19044 -10.12914 -10.08012 -9.84679 -9.52964 -9.39632 -9.23120 -8.82686 -8.30283 -6.85741 -5.65852 -2.94795 0.95938 1.77685 2.28246 3.08718 3.29435 3.36301 3.49583 3.54288 3.55136 3.56493 4.21007 4.37992 4.41520 4.54659 4.64379 4.66178 4.78681 5.02635 5.05285 5.09342 5.16780 5.20041 5.24335 5.31476 5.37728 5.43204 5.47148 5.52702 5.58219 5.65185 5.66997 5.69429 5.83671 5.90896 5.98471 6.03825 6.12498 6.24940 6.29788 6.34257 6.43965 6.51454 6.56459 6.66039 6.80256 6.92072 6.99618 7.17804 7.24057 7.66575 7.78825 8.32124 8.51815 9.62804 10.21202 10.55787 11.56444 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002430 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.254120 B =11521.893144 C =12657.020730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.068 0.932 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.063 3.937 18 N -0.590 5.590 19 C 0.592 3.408 20 O -0.528 6.528 21 C -0.059 4.059 22 C 0.010 3.990 23 O -0.195 6.195 24 C 0.198 3.802 25 C 0.007 3.993 26 C -0.157 4.157 27 C -0.172 4.172 28 C -0.174 4.174 29 N -0.450 5.450 30 C 0.122 3.878 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.147 0.853 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.065 0.935 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -1.992 -29.624 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.121 4.121 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.164 4.164 17 C -0.059 4.059 18 N -0.321 5.321 19 C 0.378 3.622 20 O -0.404 6.404 21 C -0.179 4.179 22 C -0.063 4.063 23 O -0.081 6.081 24 C -0.010 4.010 25 C -0.031 4.031 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.211 4.211 29 N -0.180 5.180 30 C 0.001 3.999 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.248 0.752 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.083 0.917 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.098 -1.666 -29.052 29.387 hybrid contribution 0.579 -0.184 1.321 1.454 sum 4.677 -1.850 -27.731 28.184 Atomic orbital electron populations 1.22472 0.99322 1.00765 0.99837 1.20180 0.91809 0.95256 0.85800 0.93538 1.42455 1.78068 1.10750 1.05283 1.19198 1.36485 0.93766 0.87346 0.91304 1.24738 1.02304 0.95966 0.97974 1.69673 1.50766 1.08633 1.28701 0.86235 0.77187 0.78796 0.84235 1.21900 1.21865 1.20857 1.21742 0.94557 1.00441 0.95372 0.91316 1.21660 1.00803 0.99039 0.93927 1.21824 0.95528 1.00994 0.98089 1.22873 0.94531 1.00182 0.88349 1.47958 1.42934 1.32621 1.08599 1.16846 0.79765 0.79936 0.85678 1.90894 1.53854 1.64332 1.31369 1.21948 1.00173 1.02372 0.93412 1.25320 1.00492 0.97723 0.82770 1.84386 1.49674 1.53809 1.20217 1.26310 0.87626 0.89699 0.97336 1.19722 1.01208 1.01014 0.81157 1.22153 1.00902 1.00111 0.94432 1.23102 1.00588 0.93854 1.03332 1.23020 1.03419 1.02233 0.92421 1.70350 1.26003 1.22533 0.99128 1.21756 0.93961 0.99016 0.85186 0.92921 0.94276 0.93651 0.78213 0.93588 0.91458 0.92072 0.91969 0.91408 0.92658 0.83697 0.75172 0.88193 0.87183 0.87422 0.88136 0.88544 0.88474 0.88346 0.91688 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.14 37.16 0.34 -2.68 16 2 C 0.18 3.63 2.47 -67.93 -0.17 3.47 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -18.53 4.52 -53.42 -0.24 -18.77 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 9 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 10 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C -0.10 -1.76 1.97 -90.50 -0.18 -1.94 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 15 C -0.12 -1.59 4.85 -26.69 -0.13 -1.72 16 16 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 17 C 0.06 0.83 6.33 -3.71 -0.02 0.81 16 18 N -0.59 -9.72 2.97 -174.04 -0.52 -10.24 16 19 C 0.59 10.34 7.68 -12.52 -0.10 10.25 16 20 O -0.53 -11.16 16.33 5.27 0.09 -11.07 16 21 C -0.06 -0.82 6.72 -83.02 -0.56 -1.38 16 22 C 0.01 0.12 11.95 29.96 0.36 0.47 16 23 O -0.19 -1.94 10.73 6.49 0.07 -1.88 16 24 C 0.20 1.86 7.51 -13.08 -0.10 1.76 16 25 C 0.01 0.04 6.12 -27.88 -0.17 -0.13 16 26 C -0.16 -0.85 5.72 -90.62 -0.52 -1.37 16 27 C -0.17 -0.85 10.18 -26.73 -0.27 -1.12 16 28 C -0.17 -0.71 10.25 -26.73 -0.27 -0.98 16 29 N -0.45 -5.30 7.74 -7.65 -0.06 -5.36 16 30 C 0.12 2.28 5.46 -3.71 -0.02 2.26 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.38 10.68 7.62 -40.82 -0.31 10.37 16 35 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.15 1.82 3.66 -77.04 -0.28 1.53 16 42 H 0.23 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.51 7.88 -51.93 -0.41 0.10 16 45 H 0.11 0.68 8.07 -51.93 -0.42 0.26 16 46 H 0.10 0.45 8.03 -51.93 -0.42 0.04 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.11 2.43 6.56 -51.93 -0.34 2.09 16 LS Contribution 408.66 15.07 6.16 6.16 Total: -1.00 -34.22 408.66 -9.32 -43.54 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.30 Total: 9.28 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.22 Total: -1.35 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.09 Total: -62.73 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.16 Total: -12.95 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.22 -9.32 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667346308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.989 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds