Wall clock time and date at job start Wed Apr 1 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47180 * 2 1 4 4 N 1.46503 * 109.46753 * 119.99240 * 2 1 3 5 5 C 1.36937 * 120.00350 * 274.99943 * 4 2 1 6 6 H 1.07994 * 119.99691 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99956 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99979 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46913 * 120.00327 * 9 7 5 12 12 H 1.48499 * 109.47289 * 240.00315 * 9 7 5 13 13 C 1.52995 * 109.47031 * 239.99099 * 2 1 3 14 14 H 1.08998 * 109.49577 * 184.93808 * 13 2 1 15 15 C 1.53043 * 109.49592 * 64.84074 * 13 2 1 16 16 C 1.53038 * 109.53599 * 178.67952 * 15 13 2 17 17 C 1.53192 * 109.31223 * 61.37041 * 16 15 13 18 18 N 1.46924 * 108.77330 * 305.35823 * 17 16 15 19 19 C 1.34774 * 120.63211 * 233.58798 * 18 17 16 20 20 O 1.21619 * 119.99667 * 172.86748 * 19 18 17 21 21 C 1.47414 * 120.00362 * 352.86964 * 19 18 17 22 22 C 1.36088 * 126.45297 * 172.75555 * 21 19 18 23 23 O 1.34255 * 106.95298 * 179.97438 * 22 21 19 24 24 C 1.34052 * 108.22658 * 0.02562 * 23 22 21 25 25 C 1.50702 * 125.38255 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47229 * 269.97807 * 25 24 23 27 27 C 1.52994 * 117.49461 * 243.74429 * 26 25 24 28 28 C 1.53001 * 117.49557 * 175.08445 * 26 25 24 29 29 N 1.29938 * 109.24119 * 359.73964 * 24 23 22 30 30 C 1.46935 * 118.73768 * 53.61251 * 18 17 16 31 31 H 1.08998 * 109.46868 * 300.00319 * 1 2 3 32 32 H 1.09002 * 109.47138 * 60.00440 * 1 2 3 33 33 H 1.09002 * 109.47032 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99883 * 95.00335 * 4 2 1 35 35 H 0.97000 * 119.99152 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.45925 * 298.70368 * 15 13 2 37 37 H 1.09006 * 109.46093 * 58.66254 * 15 13 2 38 38 H 1.09002 * 109.50167 * 301.41239 * 16 15 13 39 39 H 1.09009 * 109.52151 * 181.33128 * 16 15 13 40 40 H 1.09000 * 109.58649 * 185.57726 * 17 16 15 41 41 H 1.08994 * 109.70527 * 65.22103 * 17 16 15 42 42 H 1.08000 * 126.52552 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.46790 * 29.97400 * 25 24 23 44 44 H 1.09001 * 109.46941 * 149.97588 * 25 24 23 45 45 H 1.08994 * 115.54708 * 29.41404 * 26 25 24 46 46 H 1.09002 * 117.50656 * 359.97438 * 27 26 25 47 47 H 1.09001 * 117.49889 * 145.02320 * 27 26 25 48 48 H 1.08995 * 117.49408 * 214.97718 * 28 26 25 49 49 H 1.08996 * 117.49987 * 359.97438 * 28 26 25 50 50 H 1.09002 * 109.58550 * 186.60317 * 30 18 17 51 51 H 1.08993 * 109.58593 * 66.17565 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4243 7 6 2.6122 -0.6615 3.5092 8 7 2.9261 -1.9383 3.4499 9 14 2.7913 0.2708 5.1180 10 1 2.3762 1.6829 4.9207 11 1 1.9310 -0.3576 6.1526 12 1 4.2083 0.2280 5.5598 13 6 2.0400 -0.7214 -1.2491 14 1 3.1264 -0.7989 -1.2064 15 6 1.6320 0.0663 -2.4962 16 6 2.1699 -0.6371 -3.7444 17 6 1.5608 -2.0396 -3.8378 18 7 1.8248 -2.7544 -2.5815 19 6 2.4179 -3.9645 -2.5916 20 8 2.7487 -4.4883 -1.5450 21 6 2.6658 -4.6534 -3.8711 22 6 3.3718 -5.8035 -4.0467 23 8 3.3507 -6.0790 -5.3606 24 6 2.6479 -5.1194 -5.9789 25 6 2.3818 -5.0502 -7.4607 26 6 3.4991 -4.2584 -8.1431 27 6 3.1171 -2.9449 -8.8283 28 6 3.4728 -4.1727 -9.6705 29 7 2.2273 -4.2617 -5.0982 30 6 1.4295 -2.1249 -1.3141 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 1.1529 35 1 3.2494 -2.3954 4.2420 36 1 0.5448 0.1221 -2.5508 37 1 2.0448 1.0736 -2.4407 38 1 3.2551 -0.7153 -3.6789 39 1 1.8993 -0.0633 -4.6309 40 1 2.0145 -2.5805 -4.6682 41 1 0.4850 -1.9634 -3.9957 42 1 3.8561 -6.3845 -3.2759 43 1 2.3486 -6.0593 -7.8713 44 1 1.4266 -4.5551 -7.6355 45 1 4.4741 -4.3084 -7.6585 46 1 2.0698 -2.6449 -8.7933 47 1 3.8410 -2.1307 -8.7949 48 1 4.4306 -4.1657 -10.1907 49 1 2.6598 -4.6806 -10.1891 50 1 1.7966 -2.7221 -0.4794 51 1 0.3430 -2.0534 -1.2649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667346309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:53 Heat of formation + Delta-G solvation = 28.909392 kcal Electronic energy + Delta-G solvation = -31101.706724 eV Core-core repulsion = 27004.113550 eV Total energy + Delta-G solvation = -4097.593175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.70208 -39.95359 -38.08123 -37.74647 -35.55204 -34.92279 -32.81979 -32.11564 -31.78235 -29.71385 -28.32699 -27.77875 -25.83756 -24.50920 -23.33980 -23.10061 -22.83183 -22.24721 -21.22031 -20.92721 -19.64936 -18.59902 -17.66864 -17.13065 -17.07100 -16.73587 -16.16374 -15.74728 -14.99658 -14.76743 -14.72494 -14.60373 -14.42231 -13.95852 -13.86400 -13.65389 -13.51853 -13.24502 -12.95714 -12.87439 -12.60860 -12.36775 -12.25315 -11.97241 -11.88285 -11.56517 -11.45856 -11.37365 -10.92712 -10.88496 -10.82589 -10.56557 -10.51549 -10.36524 -10.27556 -10.16403 -10.14129 -9.90238 -9.60245 -9.43790 -9.23668 -8.83496 -8.31450 -6.86692 -5.66388 -2.95671 0.94707 1.77376 2.28140 3.04739 3.29806 3.31568 3.48667 3.53655 3.54844 3.56358 4.21123 4.37432 4.41152 4.53583 4.63748 4.65371 4.78369 5.00891 5.03472 5.09146 5.12878 5.20385 5.21152 5.31161 5.34546 5.43439 5.46888 5.54528 5.55579 5.65602 5.66567 5.69904 5.76702 5.86519 5.96538 5.99761 6.06774 6.16803 6.22185 6.28925 6.36671 6.46032 6.51007 6.67879 6.73562 6.87920 6.97828 7.18361 7.23696 7.60499 7.78651 8.27696 8.51390 9.62217 10.21110 10.55360 11.55864 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002365 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.378992 B =11836.860855 C =12834.218866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.082 3.918 18 N -0.591 5.591 19 C 0.592 3.408 20 O -0.528 6.528 21 C -0.061 4.061 22 C 0.011 3.989 23 O -0.195 6.195 24 C 0.196 3.804 25 C 0.008 3.992 26 C -0.157 4.157 27 C -0.172 4.172 28 C -0.174 4.174 29 N -0.450 5.450 30 C 0.115 3.885 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.232 0.768 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -5.500 -29.765 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.040 4.040 18 N -0.322 5.322 19 C 0.378 3.622 20 O -0.404 6.404 21 C -0.181 4.181 22 C -0.063 4.063 23 O -0.081 6.081 24 C -0.012 4.012 25 C -0.030 4.030 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.211 4.211 29 N -0.181 5.181 30 C -0.006 4.006 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.248 0.752 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.753 -5.142 -29.193 29.694 hybrid contribution 0.578 -0.318 1.299 1.457 sum -1.175 -5.460 -27.894 28.448 Atomic orbital electron populations 1.22574 0.99559 1.00869 0.99923 1.20177 0.91793 0.95268 0.85778 0.93334 1.42513 1.78086 1.10831 1.05305 1.19266 1.36356 0.93833 0.87367 0.91215 1.24754 1.02359 0.95974 0.98011 1.69693 1.50844 1.08598 1.28631 0.86155 0.77237 0.78744 0.84285 1.20649 1.21989 1.21986 1.21765 1.00952 0.94200 0.95320 0.90829 1.21624 1.00981 0.98832 0.93823 1.21915 1.00802 0.95913 0.98402 1.22536 1.00887 0.93152 0.87461 1.47938 1.58361 1.17175 1.08735 1.16854 0.78191 0.81319 0.85797 1.90897 1.51591 1.66302 1.31637 1.21912 1.05014 0.97910 0.93272 1.25326 1.00583 0.97805 0.82540 1.84384 1.58087 1.46036 1.19629 1.26280 0.93244 0.84294 0.97375 1.19711 0.99466 1.02651 0.81187 1.22155 0.99670 1.00883 0.94902 1.23109 1.02889 0.91545 1.03308 1.23029 1.03569 1.02247 0.92262 1.70639 1.22815 1.25927 0.98725 1.21918 0.99338 0.94046 0.85313 0.92910 0.94296 0.93250 0.78070 0.93611 0.91608 0.91839 0.92035 0.91204 0.85188 0.92107 0.75184 0.88238 0.87230 0.87417 0.88162 0.88516 0.88466 0.88368 0.88203 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.77 37.16 0.33 -2.76 16 2 C 0.18 3.65 2.67 -67.93 -0.18 3.47 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 N -0.73 -18.73 5.06 -53.43 -0.27 -19.00 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 9 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 C -0.10 -1.78 2.27 -90.50 -0.21 -1.99 16 14 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 15 C -0.11 -1.55 4.89 -26.69 -0.13 -1.68 16 16 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 17 C 0.08 1.05 6.09 -3.71 -0.02 1.03 16 18 N -0.59 -9.46 2.97 -174.04 -0.52 -9.97 16 19 C 0.59 10.13 7.67 -12.53 -0.10 10.04 16 20 O -0.53 -10.93 16.32 5.26 0.09 -10.85 16 21 C -0.06 -0.84 6.66 -83.02 -0.55 -1.39 16 22 C 0.01 0.12 11.95 29.96 0.36 0.48 16 23 O -0.20 -1.94 10.73 6.51 0.07 -1.87 16 24 C 0.20 1.82 7.51 -13.08 -0.10 1.73 16 25 C 0.01 0.04 6.12 -27.88 -0.17 -0.13 16 26 C -0.16 -0.86 5.72 -90.62 -0.52 -1.38 16 27 C -0.17 -0.86 10.18 -26.69 -0.27 -1.13 16 28 C -0.17 -0.72 10.26 -26.69 -0.27 -0.99 16 29 N -0.45 -5.24 7.85 -7.65 -0.06 -5.30 16 30 C 0.12 2.05 5.19 -3.71 -0.02 2.03 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 33 H 0.05 0.91 6.23 -51.93 -0.32 0.58 16 34 H 0.38 10.74 6.47 -40.82 -0.26 10.48 16 35 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 0.84 6.62 -51.93 -0.34 0.50 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.13 1.60 4.14 -59.10 -0.24 1.36 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.23 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.50 7.88 -51.93 -0.41 0.09 16 45 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.10 0.45 8.03 -51.93 -0.42 0.04 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.10 2.16 5.81 -51.93 -0.30 1.86 16 51 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -34.52 403.92 -9.16 -43.69 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.00 Total: 9.52 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.26 Total: -1.85 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.12 Total: -62.76 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.16 Total: -12.72 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.52 -9.16 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667346309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.594 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds