Wall clock time and date at job start Wed Apr 1 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47027 * 2 1 4 4 O 1.42900 * 109.47052 * 119.99800 * 2 1 3 5 5 C 1.35670 * 117.00153 * 89.99721 * 4 2 1 6 6 C 1.39282 * 119.61683 * 180.02562 * 5 4 2 7 7 C 1.38332 * 119.30308 * 179.97438 * 6 5 4 8 8 C 1.38785 * 118.55877 * 359.74627 * 7 6 5 9 9 C 1.39125 * 119.18686 * 0.50056 * 8 7 6 10 10 C 1.48149 * 119.68745 * 179.76826 * 9 8 7 11 11 O 1.21520 * 119.99912 * 359.72441 * 10 9 8 12 12 N 1.34782 * 120.00071 * 179.72071 * 10 9 8 13 13 C 1.47023 * 125.64580 * 0.03045 * 12 10 9 14 14 C 1.54322 * 107.27149 * 178.91578 * 13 12 10 15 15 C 1.55282 * 103.00430 * 337.88615 * 14 13 12 16 16 H 1.09001 * 110.95548 * 277.33125 * 15 14 13 17 17 C 1.52999 * 111.09626 * 153.45081 * 15 14 13 18 18 H 1.08997 * 109.47221 * 306.35427 * 17 15 14 19 19 C 1.52998 * 109.47646 * 66.35799 * 17 15 14 20 20 N 1.46501 * 109.46871 * 186.35885 * 17 15 14 21 21 C 1.36933 * 120.00327 * 154.99914 * 20 17 15 22 22 H 1.08002 * 119.99991 * 359.97438 * 21 20 17 23 23 C 1.38818 * 120.00056 * 179.97438 * 21 20 17 24 24 N 1.31623 * 119.99841 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00170 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47364 * 89.99562 * 25 23 21 27 27 H 1.48498 * 109.47395 * 209.99990 * 25 23 21 28 28 H 1.48503 * 109.47151 * 329.99634 * 25 23 21 29 29 C 1.47419 * 125.64834 * 179.97438 * 12 10 9 30 30 N 1.31901 * 119.61561 * 0.02562 * 5 4 2 31 31 H 1.09001 * 109.47527 * 300.00569 * 1 2 3 32 32 H 1.09004 * 109.46934 * 60.00316 * 1 2 3 33 33 H 1.08995 * 109.47273 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47306 * 239.99698 * 2 1 3 35 35 H 1.09000 * 109.46944 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47005 * 299.99640 * 3 2 1 37 37 H 1.08994 * 109.47324 * 59.99710 * 3 2 1 38 38 H 1.08001 * 120.35071 * 0.02562 * 6 5 4 39 39 H 1.08006 * 120.71594 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.40054 * 180.24593 * 8 7 6 41 41 H 1.09009 * 109.87859 * 298.33396 * 13 12 10 42 42 H 1.09002 * 109.88373 * 59.49886 * 13 12 10 43 43 H 1.09006 * 110.71959 * 96.16400 * 14 13 12 44 44 H 1.08997 * 110.71908 * 219.26179 * 14 13 12 45 45 H 1.09003 * 109.46828 * 299.99844 * 19 17 15 46 46 H 1.08997 * 109.47114 * 59.99563 * 19 17 15 47 47 H 1.09002 * 109.47248 * 179.97438 * 19 17 15 48 48 H 0.97007 * 119.99718 * 334.99258 * 20 17 15 49 49 H 0.96997 * 120.00022 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.36926 * 322.99268 * 29 12 10 51 51 H 1.08995 * 110.36556 * 85.20552 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 -2.0108 1.0654 6 6 2.6748 -2.7218 2.1698 7 6 2.8814 -4.0852 2.0594 8 6 2.6125 -4.7007 0.8449 9 6 2.1566 -3.9301 -0.2200 10 6 1.8711 -4.5749 -1.5229 11 8 2.0402 -5.7705 -1.6592 12 7 1.4238 -3.8354 -2.5572 13 6 1.1770 -2.3863 -2.5308 14 6 0.7020 -1.9767 -3.9408 15 6 1.2468 -3.1203 -4.8390 16 1 2.2914 -2.9483 -5.0984 17 6 0.3920 -3.2873 -6.0969 18 1 -0.6524 -3.4143 -5.8122 19 6 0.5330 -2.0446 -6.9781 20 7 0.8424 -4.4667 -6.8402 21 6 -0.0232 -5.1215 -7.6751 22 1 -1.0380 -4.7688 -7.7854 23 6 0.4038 -6.2387 -8.3798 24 7 -0.4284 -6.8685 -9.1820 25 14 2.1587 -6.8493 -8.1886 26 1 2.2224 -7.8330 -7.0779 27 1 2.5974 -7.4981 -9.4502 28 1 3.0516 -5.7021 -7.8855 29 6 1.1022 -4.3454 -3.9024 30 7 1.9701 -2.6225 -0.0780 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9563 0.8899 38 1 2.8700 -2.2142 3.1030 39 1 3.2405 -4.6587 2.9012 40 1 2.7594 -5.7641 0.7268 41 1 0.4042 -2.1552 -1.7976 42 1 2.0972 -1.8579 -2.2816 43 1 -0.3865 -1.9390 -3.9853 44 1 1.1318 -1.0173 -4.2290 45 1 0.1979 -1.1671 -6.4251 46 1 1.5775 -1.9176 -7.2628 47 1 -0.0756 -2.1638 -7.8745 48 1 1.7538 -4.7837 -6.7409 49 1 -0.1302 -7.6493 -9.6741 50 1 1.8049 -5.1276 -4.1896 51 1 0.0809 -4.7252 -3.9299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672235800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:49 Heat of formation + Delta-G solvation = -16.483853 kcal Electronic energy + Delta-G solvation = -31535.455013 eV Core-core repulsion = 27435.893439 eV Total energy + Delta-G solvation = -4099.561573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26770 -39.84386 -38.61540 -37.61212 -35.38693 -33.67489 -33.13629 -32.31022 -30.87387 -30.45517 -28.92649 -28.45661 -27.62192 -25.44572 -24.04870 -23.62048 -22.88641 -21.54240 -21.36771 -20.25503 -19.84359 -18.18829 -17.93277 -17.37944 -16.41779 -16.37133 -16.02165 -15.89328 -15.56353 -14.91504 -14.75816 -14.38216 -14.20332 -14.02659 -13.76810 -13.68355 -13.34784 -13.05011 -12.80995 -12.72578 -12.64324 -12.57785 -12.45579 -12.30153 -12.25777 -12.14999 -11.77616 -11.69271 -11.27703 -11.02923 -10.98324 -10.81667 -10.68138 -10.59943 -10.44434 -10.29433 -10.19661 -9.93212 -9.69274 -9.55727 -8.92637 -8.91485 -8.51433 -7.26013 -5.74785 -3.10416 0.36823 0.91599 2.61222 2.62646 2.87298 3.41292 3.44841 3.49765 3.58638 3.72149 4.35641 4.49330 4.56436 4.60336 4.62252 4.65664 4.70532 4.77490 4.84093 4.86595 4.97458 5.11913 5.19792 5.32508 5.36570 5.42437 5.46778 5.49600 5.53427 5.57845 5.61904 5.72572 5.75453 5.78829 5.82242 5.85655 5.89895 6.02094 6.06561 6.08107 6.18858 6.26919 6.31502 6.40420 6.50211 6.77604 6.88785 6.99070 7.31335 7.51034 8.00595 8.08547 8.44189 9.22373 9.95236 10.14360 11.43583 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.002921 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.048036 B = 9582.715824 C =11126.141207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 C -0.151 4.151 4 O -0.301 6.301 5 C 0.321 3.679 6 C -0.172 4.172 7 C -0.047 4.047 8 C -0.150 4.150 9 C 0.128 3.872 10 C 0.577 3.423 11 O -0.529 6.529 12 N -0.597 5.597 13 C 0.117 3.883 14 C -0.130 4.130 15 C -0.106 4.106 16 H 0.080 0.920 17 C 0.190 3.810 18 H 0.058 0.942 19 C -0.164 4.164 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.278 1.278 29 C 0.116 3.884 30 N -0.512 5.512 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.058 0.942 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.080 0.920 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 16.811 24.992 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.140 3.860 6 C -0.193 4.193 7 C -0.072 4.072 8 C -0.171 4.171 9 C -0.009 4.009 10 C 0.363 3.637 11 O -0.405 6.405 12 N -0.329 5.329 13 C -0.006 4.006 14 C -0.168 4.168 15 C -0.126 4.126 16 H 0.098 0.902 17 C 0.081 3.919 18 H 0.076 0.924 19 C -0.224 4.224 20 N -0.392 5.392 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.006 4.006 30 N -0.238 5.238 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.444 16.701 24.318 29.998 hybrid contribution 1.482 -0.913 0.530 1.820 sum 6.926 15.787 24.847 30.243 Atomic orbital electron populations 1.22255 0.94654 1.03003 1.02886 1.22511 0.94591 0.92941 0.87943 1.21913 1.01972 0.93785 1.03142 1.86307 1.80149 1.15524 1.38841 1.19803 0.91797 0.84897 0.89515 1.21289 1.04575 0.94432 0.98966 1.21447 0.94822 0.93416 0.97518 1.21997 1.00283 1.02419 0.92434 1.20787 0.97189 0.88217 0.94677 1.17499 0.78164 0.85675 0.82338 1.90831 1.53294 1.13799 1.82606 1.48379 1.63161 1.09660 1.11674 1.22196 1.00946 0.80167 0.97245 1.22809 1.01808 0.98841 0.93357 1.22726 1.00989 0.93586 0.95266 0.90200 1.20126 0.96203 0.87409 0.88209 0.92374 1.22400 1.01270 0.97749 1.00942 1.42801 1.11965 1.31380 1.53036 1.19034 0.94597 1.06688 1.16802 0.89196 1.24648 0.97248 0.98022 0.99063 1.69698 1.34463 1.22154 1.31896 0.86606 0.86150 0.78841 0.77283 1.20907 1.21816 1.20378 1.22350 1.02136 0.97163 0.78913 1.67422 1.20489 1.11273 1.24653 0.91977 0.90679 0.91932 0.88906 0.91846 0.90227 0.91673 0.83750 0.83350 0.83135 0.90935 0.91175 0.90281 0.90071 0.94064 0.93653 0.92283 0.80683 0.93087 0.90129 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.33 37.16 0.35 -0.88 16 2 C 0.08 0.59 3.11 -26.73 -0.08 0.51 16 3 C -0.15 -0.89 9.56 37.16 0.36 -0.53 16 4 O -0.30 -2.83 9.76 -18.71 -0.18 -3.02 16 5 C 0.32 3.23 7.46 -17.13 -0.13 3.10 16 6 C -0.17 -1.38 10.05 -39.16 -0.39 -1.78 16 7 C -0.05 -0.35 10.16 -39.34 -0.40 -0.75 16 8 C -0.15 -1.57 9.63 -39.05 -0.38 -1.95 16 9 C 0.13 1.63 6.72 -83.03 -0.56 1.07 16 10 C 0.58 9.07 7.84 -12.19 -0.10 8.98 16 11 O -0.53 -10.00 16.57 5.35 0.09 -9.91 16 12 N -0.60 -8.79 3.33 -171.53 -0.57 -9.36 16 13 C 0.12 1.34 4.78 -3.06 -0.01 1.33 16 14 C -0.13 -1.43 5.60 -24.83 -0.14 -1.57 16 15 C -0.11 -1.55 2.63 -88.42 -0.23 -1.78 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.19 3.39 2.41 -67.93 -0.16 3.23 16 18 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 19 C -0.16 -2.65 9.34 37.16 0.35 -2.30 16 20 N -0.75 -17.13 4.62 -53.43 -0.25 -17.38 16 21 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 25 Si 0.88 22.46 27.74 -169.99 -4.71 17.74 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 29 C 0.12 1.91 6.08 -2.55 -0.02 1.89 16 30 N -0.51 -5.78 5.26 -9.88 -0.05 -5.84 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 34 H 0.09 0.80 4.94 -51.93 -0.26 0.54 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.15 1.55 7.63 -52.49 -0.40 1.15 16 41 H 0.07 0.79 6.82 -51.92 -0.35 0.43 16 42 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 43 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.53 7.51 -51.93 -0.39 0.14 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 49 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 50 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 51 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -33.66 406.79 -8.83 -42.50 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.26 Total: 5.97 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.80 Total: 1.81 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.09 Total: -61.22 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.09 Total: -12.92 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.66 -8.83 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672235800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.012 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds