Wall clock time and date at job start Wed Apr 1 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47027 * 2 1 4 4 O 1.42900 * 109.47052 * 119.99800 * 2 1 3 5 5 C 1.35670 * 117.00153 * 89.99721 * 4 2 1 6 6 C 1.39282 * 119.61683 * 180.02562 * 5 4 2 7 7 C 1.38332 * 119.30308 * 179.97438 * 6 5 4 8 8 C 1.38785 * 118.55877 * 359.74627 * 7 6 5 9 9 C 1.39125 * 119.18686 * 0.50056 * 8 7 6 10 10 C 1.48149 * 119.68745 * 179.76826 * 9 8 7 11 11 O 1.21520 * 119.99912 * 359.72441 * 10 9 8 12 12 N 1.34782 * 120.00071 * 179.72071 * 10 9 8 13 13 C 1.47023 * 125.64580 * 0.03045 * 12 10 9 14 14 C 1.54322 * 107.27149 * 178.91578 * 13 12 10 15 15 C 1.55282 * 103.00430 * 337.88615 * 14 13 12 16 16 H 1.09001 * 110.95548 * 277.33125 * 15 14 13 17 17 C 1.52999 * 111.09626 * 153.45081 * 15 14 13 18 18 H 1.08997 * 109.47221 * 306.35427 * 17 15 14 19 19 C 1.52998 * 109.47646 * 66.35799 * 17 15 14 20 20 N 1.46501 * 109.46871 * 186.35885 * 17 15 14 21 21 C 1.36933 * 120.00327 * 154.99914 * 20 17 15 22 22 H 1.08002 * 119.99991 * 359.97438 * 21 20 17 23 23 C 1.38818 * 120.00056 * 179.97438 * 21 20 17 24 24 N 1.31623 * 119.99841 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00170 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47364 * 89.99562 * 25 23 21 27 27 H 1.48498 * 109.47395 * 209.99990 * 25 23 21 28 28 H 1.48503 * 109.47151 * 329.99634 * 25 23 21 29 29 C 1.47419 * 125.64834 * 179.97438 * 12 10 9 30 30 N 1.31901 * 119.61561 * 0.02562 * 5 4 2 31 31 H 1.09001 * 109.47527 * 300.00569 * 1 2 3 32 32 H 1.09004 * 109.46934 * 60.00316 * 1 2 3 33 33 H 1.08995 * 109.47273 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47306 * 239.99698 * 2 1 3 35 35 H 1.09000 * 109.46944 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47005 * 299.99640 * 3 2 1 37 37 H 1.08994 * 109.47324 * 59.99710 * 3 2 1 38 38 H 1.08001 * 120.35071 * 0.02562 * 6 5 4 39 39 H 1.08006 * 120.71594 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.40054 * 180.24593 * 8 7 6 41 41 H 1.09009 * 109.87859 * 298.33396 * 13 12 10 42 42 H 1.09002 * 109.88373 * 59.49886 * 13 12 10 43 43 H 1.09006 * 110.71959 * 96.16400 * 14 13 12 44 44 H 1.08997 * 110.71908 * 219.26179 * 14 13 12 45 45 H 1.09003 * 109.46828 * 299.99844 * 19 17 15 46 46 H 1.08997 * 109.47114 * 59.99563 * 19 17 15 47 47 H 1.09002 * 109.47248 * 179.97438 * 19 17 15 48 48 H 0.97007 * 119.99718 * 334.99258 * 20 17 15 49 49 H 0.96997 * 120.00022 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.36926 * 322.99268 * 29 12 10 51 51 H 1.08995 * 110.36556 * 85.20552 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 -2.0108 1.0654 6 6 2.6748 -2.7218 2.1698 7 6 2.8814 -4.0852 2.0594 8 6 2.6125 -4.7007 0.8449 9 6 2.1566 -3.9301 -0.2200 10 6 1.8711 -4.5749 -1.5229 11 8 2.0402 -5.7705 -1.6592 12 7 1.4238 -3.8354 -2.5572 13 6 1.1770 -2.3863 -2.5308 14 6 0.7020 -1.9767 -3.9408 15 6 1.2468 -3.1203 -4.8390 16 1 2.2914 -2.9483 -5.0984 17 6 0.3920 -3.2873 -6.0969 18 1 -0.6524 -3.4143 -5.8122 19 6 0.5330 -2.0446 -6.9781 20 7 0.8424 -4.4667 -6.8402 21 6 -0.0232 -5.1215 -7.6751 22 1 -1.0380 -4.7688 -7.7854 23 6 0.4038 -6.2387 -8.3798 24 7 -0.4284 -6.8685 -9.1820 25 14 2.1587 -6.8493 -8.1886 26 1 2.2224 -7.8330 -7.0779 27 1 2.5974 -7.4981 -9.4502 28 1 3.0516 -5.7021 -7.8855 29 6 1.1022 -4.3454 -3.9024 30 7 1.9701 -2.6225 -0.0780 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9563 0.8899 38 1 2.8700 -2.2142 3.1030 39 1 3.2405 -4.6587 2.9012 40 1 2.7594 -5.7641 0.7268 41 1 0.4042 -2.1552 -1.7976 42 1 2.0972 -1.8579 -2.2816 43 1 -0.3865 -1.9390 -3.9853 44 1 1.1318 -1.0173 -4.2290 45 1 0.1979 -1.1671 -6.4251 46 1 1.5775 -1.9176 -7.2628 47 1 -0.0756 -2.1638 -7.8745 48 1 1.7538 -4.7837 -6.7409 49 1 -0.1302 -7.6493 -9.6741 50 1 1.8049 -5.1276 -4.1896 51 1 0.0809 -4.7252 -3.9299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672235800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:48 Heat of formation + Delta-G solvation = -38.607343 kcal Electronic energy + Delta-G solvation = -31536.414359 eV Core-core repulsion = 27435.893439 eV Total energy + Delta-G solvation = -4100.520920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.09793 -40.88338 -39.52259 -38.71840 -36.96687 -34.50929 -34.18817 -33.67093 -32.34523 -31.34775 -30.35393 -29.72062 -28.10765 -26.41014 -25.62397 -24.66448 -23.87820 -22.76389 -22.15146 -21.36284 -21.18653 -19.64972 -18.92711 -18.71063 -17.48943 -17.10221 -16.88482 -16.84187 -16.66064 -16.51854 -15.92537 -15.46978 -15.37429 -15.06346 -14.86953 -14.59318 -14.49978 -14.18639 -14.09394 -13.97152 -13.81514 -13.63409 -13.27650 -13.21227 -13.14260 -13.10580 -12.95934 -12.81742 -12.69953 -12.41279 -12.13147 -11.97177 -11.87457 -11.80298 -11.70974 -11.64710 -11.53275 -11.35757 -11.00095 -10.98911 -10.57656 -9.86969 -9.52138 -9.30178 -8.01770 -5.33035 -0.45459 0.22043 1.34799 1.39127 1.43922 1.59283 1.75503 1.99867 2.47517 2.73622 2.84330 3.30578 3.35831 3.63214 3.66466 3.79708 3.88411 3.98101 3.98988 4.00764 4.08397 4.18938 4.25215 4.34965 4.43218 4.46407 4.50640 4.59807 4.71263 4.76244 4.81578 4.85479 4.88058 4.91168 4.92530 4.96271 5.01206 5.06255 5.07936 5.10758 5.20351 5.28765 5.30518 5.34379 5.38473 5.39977 5.62349 5.80068 6.16732 6.23211 6.36349 6.55246 6.93340 7.09637 7.87270 8.03750 9.20155 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.002921 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.048036 B = 9582.715824 C =11126.141207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.305 6.305 5 C 0.308 3.692 6 C -0.159 4.159 7 C -0.034 4.034 8 C -0.154 4.154 9 C 0.102 3.898 10 C 0.569 3.431 11 O -0.576 6.576 12 N -0.598 5.598 13 C 0.122 3.878 14 C -0.117 4.117 15 C -0.094 4.094 16 H 0.087 0.913 17 C 0.184 3.816 18 H 0.048 0.952 19 C -0.154 4.154 20 N -0.754 5.754 21 C -0.217 4.217 22 H 0.061 0.939 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.944 3.056 26 H -0.288 1.288 27 H -0.296 1.296 28 H -0.252 1.252 29 C 0.116 3.884 30 N -0.516 5.516 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.361 0.639 49 H 0.256 0.744 50 H 0.050 0.950 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 20.085 27.814 35.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.213 6.213 5 C 0.126 3.874 6 C -0.180 4.180 7 C -0.059 4.059 8 C -0.176 4.176 9 C -0.034 4.034 10 C 0.357 3.643 11 O -0.456 6.456 12 N -0.329 5.329 13 C 0.000 4.000 14 C -0.155 4.155 15 C -0.114 4.114 16 H 0.105 0.895 17 C 0.076 3.924 18 H 0.066 0.934 19 C -0.213 4.213 20 N -0.397 5.397 21 C -0.348 4.348 22 H 0.079 0.921 23 C -0.255 4.255 24 N -0.636 5.636 25 Si 0.773 3.227 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.176 1.176 29 C -0.007 4.007 30 N -0.243 5.243 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.192 0.808 39 H 0.205 0.795 40 H 0.163 0.837 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.194 0.806 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.104 20.070 27.176 34.523 hybrid contribution 0.877 -1.826 -0.204 2.036 sum 7.981 18.245 26.972 33.527 Atomic orbital electron populations 1.22230 0.94275 1.02048 1.03845 1.22682 0.94929 0.93733 0.87207 1.21917 1.01805 0.92550 1.04118 1.86320 1.80250 1.15122 1.39579 1.20140 0.92177 0.85327 0.89774 1.21722 1.02356 0.94513 0.99365 1.21843 0.93315 0.93486 0.97221 1.22131 1.00072 1.02257 0.93169 1.20392 1.00139 0.89151 0.93706 1.18098 0.77316 0.85367 0.83504 1.90785 1.55386 1.15794 1.83618 1.48480 1.62659 1.11030 1.10709 1.22340 1.01770 0.78071 0.97807 1.22855 1.02415 0.98647 0.91626 1.22554 1.00881 0.94284 0.93691 0.89502 1.20384 0.96238 0.86381 0.89396 0.93417 1.22248 1.01241 0.98076 0.99753 1.42872 1.11323 1.32761 1.52735 1.19017 0.93982 1.05960 1.15852 0.92086 1.25377 1.01354 0.98941 0.99785 1.69862 1.36658 1.23146 1.33966 0.85562 0.81871 0.78739 0.76545 1.21516 1.22249 1.17649 1.22168 1.00084 0.97569 0.80857 1.67251 1.20837 1.10506 1.25694 0.91691 0.89101 0.93744 0.89647 0.92087 0.88602 0.91367 0.80792 0.79452 0.83703 0.90120 0.90094 0.89512 0.86632 0.89832 0.93140 0.94999 0.80585 0.93537 0.93092 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.33 71.98 0.67 -1.31 16 2 C 0.07 0.92 3.11 30.59 0.10 1.01 16 3 C -0.15 -1.29 9.56 71.98 0.69 -0.60 16 4 O -0.31 -4.97 9.76 -89.86 -0.88 -5.85 16 5 C 0.31 5.48 7.46 84.93 0.63 6.11 16 6 C -0.16 -2.02 10.05 22.54 0.23 -1.79 16 7 C -0.03 -0.41 10.16 22.42 0.23 -0.18 16 8 C -0.15 -3.10 9.63 22.61 0.22 -2.88 16 9 C 0.10 2.55 6.72 41.84 0.28 2.83 16 10 C 0.57 18.43 7.84 86.88 0.68 19.11 16 11 O -0.58 -23.00 16.57 -3.78 -0.06 -23.07 16 12 N -0.60 -17.68 3.33 -814.89 -2.71 -20.39 16 13 C 0.12 2.55 4.78 86.73 0.41 2.96 16 14 C -0.12 -2.21 5.60 31.83 0.18 -2.03 16 15 C -0.09 -2.62 2.63 -9.37 -0.02 -2.64 16 16 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 17 C 0.18 6.40 2.41 44.99 0.11 6.50 16 18 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 19 C -0.15 -4.62 9.34 71.98 0.67 -3.95 16 20 N -0.75 -34.59 4.62 -322.94 -1.49 -36.08 16 21 C -0.22 -12.32 10.41 84.04 0.87 -11.44 16 22 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 23 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 24 N -0.98 -64.37 13.97 21.65 0.30 -64.07 16 25 Si 0.94 47.46 27.74 68.60 1.90 49.36 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 28 H -0.25 -11.42 6.52 99.48 0.65 -10.78 16 29 C 0.12 3.90 6.08 86.85 0.53 4.43 16 30 N -0.52 -10.94 5.26 -298.21 -1.57 -12.51 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.04 0.69 7.64 -2.39 -0.02 0.68 16 34 H 0.09 1.24 4.94 -2.39 -0.01 1.23 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.15 3.01 7.63 -2.91 -0.02 2.99 16 41 H 0.08 1.60 6.82 -2.38 -0.02 1.59 16 42 H 0.08 1.57 6.13 -2.39 -0.01 1.55 16 43 H 0.09 1.56 8.01 -2.38 -0.02 1.54 16 44 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.82 7.51 -2.39 -0.02 1.80 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.36 16.43 5.66 -92.70 -0.52 15.91 16 49 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 50 H 0.05 1.99 8.04 -2.39 -0.02 1.98 16 51 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 Total: -1.00 -78.10 406.79 2.78 -75.32 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.34 Total: 24.52 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.94 Total: 12.77 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.47 Total: -133.06 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.94 Total: -28.92 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.36 kcal Total: -78.10 2.78 -75.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672235800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.715 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds