Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 O 1.42894 * 109.47495 * 120.00607 * 2 1 3 5 5 C 1.35646 * 117.00627 * 154.94940 * 4 2 1 6 6 C 1.39346 * 120.53655 * 5.53824 * 5 4 2 7 7 C 1.38306 * 118.43886 * 180.02562 * 6 5 4 8 8 C 1.38766 * 119.44565 * 0.02562 * 7 6 5 9 9 N 1.31376 * 121.06438 * 0.27526 * 8 7 6 10 10 C 1.32855 * 121.69488 * 359.44060 * 9 8 7 11 11 C 1.47831 * 119.78139 * 180.26367 * 10 9 8 12 12 O 1.21564 * 119.99878 * 180.28871 * 11 10 9 13 13 N 1.34772 * 120.00048 * 0.29371 * 11 10 9 14 14 C 1.47021 * 125.64995 * 359.68616 * 13 11 10 15 15 C 1.54335 * 107.26751 * 178.85297 * 14 13 11 16 16 C 1.55161 * 103.02015 * 338.14253 * 15 14 13 17 17 H 1.08995 * 111.03283 * 277.21845 * 16 15 14 18 18 C 1.53000 * 111.00196 * 153.38063 * 16 15 14 19 19 H 1.08997 * 109.47112 * 306.34957 * 18 16 15 20 20 C 1.52998 * 109.47273 * 66.34970 * 18 16 15 21 21 N 1.46499 * 109.46904 * 186.35228 * 18 16 15 22 22 C 1.36937 * 120.00254 * 155.00199 * 21 18 16 23 23 H 1.08005 * 119.99670 * 359.97438 * 22 21 18 24 24 C 1.38810 * 120.00220 * 179.97438 * 22 21 18 25 25 N 1.31618 * 120.00151 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99907 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47227 * 89.99695 * 26 24 22 28 28 H 1.48501 * 109.47108 * 209.99689 * 26 24 22 29 29 H 1.48497 * 109.46995 * 329.99581 * 26 24 22 30 30 C 1.47424 * 125.64942 * 179.97438 * 13 11 10 31 31 H 1.09001 * 109.46788 * 299.99662 * 1 2 3 32 32 H 1.09000 * 109.47569 * 59.99753 * 1 2 3 33 33 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46788 * 240.00338 * 2 1 3 35 35 H 1.08994 * 109.47265 * 60.00202 * 3 2 1 36 36 H 1.09003 * 109.46977 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47103 * 299.99788 * 3 2 1 38 38 H 1.08003 * 120.78373 * 0.04960 * 6 5 4 39 39 H 1.07999 * 120.27724 * 180.02562 * 7 6 5 40 40 H 1.08000 * 119.46558 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.88532 * 298.40238 * 14 13 11 42 42 H 1.09004 * 109.88057 * 59.56339 * 14 13 11 43 43 H 1.09002 * 110.85150 * 219.67464 * 15 14 13 44 44 H 1.09003 * 110.66754 * 96.52596 * 15 14 13 45 45 H 1.09007 * 109.47034 * 59.99882 * 20 18 16 46 46 H 1.08997 * 109.47407 * 179.97438 * 20 18 16 47 47 H 1.09003 * 109.47363 * 300.00058 * 20 18 16 48 48 H 0.97006 * 120.00030 * 334.99460 * 21 18 16 49 49 H 0.96994 * 120.00603 * 180.02562 * 25 24 22 50 50 H 1.09004 * 110.36977 * 322.92976 * 30 13 11 51 51 H 1.09003 * 110.36932 * 85.13908 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.2439 -1.2247 1.0975 6 6 4.0446 -1.0284 -0.0259 7 6 5.2988 -1.6107 -0.0507 8 6 5.7212 -2.3675 1.0330 9 7 4.9468 -2.5440 2.0795 10 6 3.7366 -2.0006 2.1520 11 6 2.9029 -2.2221 3.3525 12 8 1.7930 -1.7311 3.4207 13 7 3.3735 -2.9683 4.3714 14 6 4.6889 -3.6233 4.4176 15 6 4.7979 -4.3365 5.7819 16 6 3.7624 -3.5800 6.6555 17 1 4.1882 -2.6619 7.0601 18 6 3.2321 -4.4759 7.7766 19 1 2.8515 -5.4042 7.3507 20 6 4.3642 -4.7908 8.7565 21 7 2.1517 -3.7845 8.4844 22 6 1.1977 -4.5064 9.1506 23 1 1.2414 -5.5856 9.1538 24 6 0.1743 -3.8513 9.8217 25 7 -0.7424 -4.5451 10.4624 26 14 0.0983 -1.9848 9.8155 27 1 -0.7053 -1.5260 8.6541 28 1 -0.5339 -1.5110 11.0729 29 1 1.4735 -1.4337 9.7146 30 6 2.6521 -3.2679 5.6216 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.6941 -0.4352 -0.8577 39 1 5.9442 -1.4775 -0.9064 40 1 6.7007 -2.8220 1.0142 41 1 4.7696 -4.3504 3.6095 42 1 5.4781 -2.8769 4.3274 43 1 5.8010 -4.2318 6.1954 44 1 4.5286 -5.3886 5.6887 45 1 4.7447 -3.8624 9.1825 46 1 3.9863 -5.4287 9.5555 47 1 5.1680 -5.3052 8.2298 48 1 2.1123 -2.8153 8.4813 49 1 -1.4577 -4.0874 10.9311 50 1 2.0694 -2.4035 5.9400 51 1 2.0029 -4.1332 5.4871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672240638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -13.582225 kcal Electronic energy + Delta-G solvation = -31208.854271 eV Core-core repulsion = 27109.418521 eV Total energy + Delta-G solvation = -4099.435749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27215 -39.61449 -38.71659 -37.57951 -35.23443 -33.65216 -32.92308 -32.20888 -30.82451 -30.35641 -28.77822 -28.30768 -27.68280 -25.22555 -24.23487 -23.58003 -22.80554 -21.46941 -21.21824 -19.95756 -19.72900 -18.49327 -17.77252 -17.32757 -17.01002 -16.12018 -15.76591 -15.66158 -15.24017 -14.83456 -14.65862 -14.58999 -14.22547 -13.90549 -13.71925 -13.43063 -13.32305 -13.00733 -12.80059 -12.74753 -12.60727 -12.54156 -12.46715 -12.26955 -12.21191 -12.03464 -11.64033 -11.54610 -11.36932 -11.16057 -10.91777 -10.74473 -10.51362 -10.49359 -10.25908 -10.14123 -10.06594 -9.84149 -9.58059 -9.50534 -8.86183 -8.78192 -8.31035 -7.20041 -5.69923 -3.04985 0.40498 0.88580 2.72027 2.76894 3.06556 3.45805 3.49544 3.53860 3.67099 3.97619 4.17384 4.31502 4.35717 4.49631 4.60485 4.66066 4.67163 4.73707 4.81330 4.93214 5.07008 5.12212 5.15185 5.26941 5.33557 5.43650 5.47238 5.52090 5.57514 5.58840 5.65678 5.72855 5.73971 5.85660 5.90645 5.95671 5.99583 6.07485 6.15830 6.22858 6.30867 6.37534 6.47063 6.50098 6.63943 6.85487 6.95809 7.06628 7.45541 7.72131 8.06152 8.34202 8.49264 9.27905 10.00881 10.20412 11.48578 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.002929 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.153678 B = 9556.525798 C =11450.202161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 C -0.181 4.181 4 O -0.264 6.264 5 C 0.143 3.857 6 C -0.180 4.180 7 C -0.109 4.109 8 C 0.052 3.948 9 N -0.413 5.413 10 C 0.049 3.951 11 C 0.578 3.422 12 O -0.516 6.516 13 N -0.602 5.602 14 C 0.120 3.880 15 C -0.128 4.128 16 C -0.106 4.106 17 H 0.079 0.921 18 C 0.190 3.810 19 H 0.058 0.942 20 C -0.163 4.163 21 N -0.749 5.749 22 C -0.239 4.239 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.936 5.936 26 Si 0.880 3.120 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.277 1.277 30 C 0.119 3.881 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.041 0.959 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 7.914 -27.193 32.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.238 4.238 4 O -0.174 6.174 5 C 0.092 3.908 6 C -0.207 4.207 7 C -0.129 4.129 8 C -0.109 4.109 9 N -0.125 5.125 10 C -0.090 4.090 11 C 0.365 3.635 12 O -0.390 6.390 13 N -0.336 5.336 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.126 4.126 17 H 0.097 0.903 18 C 0.080 3.920 19 H 0.076 0.924 20 C -0.223 4.223 21 N -0.392 5.392 22 C -0.369 4.369 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.584 5.584 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.204 1.204 30 C -0.003 4.003 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.622 7.559 -26.233 30.969 hybrid contribution -0.167 1.956 -0.907 2.163 sum 14.455 9.515 -27.139 32.187 Atomic orbital electron populations 1.21829 0.91791 1.03650 1.03225 1.22614 0.96345 0.92678 0.87099 1.22401 1.01761 0.95976 1.03654 1.86506 1.27192 1.66066 1.37673 1.20016 0.85942 0.91336 0.93551 1.21788 0.95762 1.04448 0.98663 1.22195 0.95509 0.95547 0.99689 1.22745 0.99966 0.98708 0.89469 1.67916 1.02485 1.16942 1.25174 1.20700 0.93035 0.99982 0.95273 1.17238 0.85534 0.79263 0.81467 1.90869 1.19163 1.49592 1.79416 1.48345 1.18306 1.49449 1.17467 1.22054 0.84517 0.96443 0.97233 1.22770 0.99862 0.99971 0.94095 1.22699 0.94992 0.99730 0.95198 0.90284 1.20136 0.88223 0.94092 0.89536 0.92400 1.22398 0.98435 1.00911 1.00604 1.42808 1.29109 1.04522 1.62757 1.19045 1.01417 0.92454 1.23987 0.89203 1.24639 0.97398 0.97048 0.99960 1.69695 1.15902 1.34115 1.38644 0.86606 0.77510 0.87536 0.77263 1.20926 1.21865 1.20355 1.22283 0.94709 1.01885 0.81409 0.90920 0.90516 0.91372 0.91060 0.90922 0.92117 0.90770 0.83633 0.84116 0.81854 0.91125 0.91080 0.90179 0.90447 0.93679 0.92355 0.94022 0.80689 0.93143 0.90379 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.56 37.15 0.36 -0.87 16 2 C 0.07 0.60 2.85 -26.74 -0.08 0.53 16 3 C -0.18 -1.28 9.19 37.15 0.34 -0.94 16 4 O -0.26 -3.53 7.86 -40.59 -0.32 -3.85 16 5 C 0.14 1.76 6.62 -38.56 -0.26 1.50 16 6 C -0.18 -1.49 8.34 -39.14 -0.33 -1.82 16 7 C -0.11 -0.72 10.10 -39.36 -0.40 -1.12 16 8 C 0.05 0.42 11.17 -17.55 -0.20 0.22 16 9 N -0.41 -4.79 6.84 -9.71 -0.07 -4.86 16 10 C 0.05 0.69 6.73 -82.89 -0.56 0.13 16 11 C 0.58 10.08 7.83 -12.34 -0.10 9.98 16 12 O -0.52 -10.70 15.39 -16.64 -0.26 -10.96 16 13 N -0.60 -9.71 3.33 -171.64 -0.57 -10.28 16 14 C 0.12 1.52 5.40 -3.06 -0.02 1.51 16 15 C -0.13 -1.57 5.59 -24.89 -0.14 -1.71 16 16 C -0.11 -1.67 2.63 -88.48 -0.23 -1.90 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C 0.19 3.55 2.41 -67.93 -0.16 3.39 16 19 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 20 C -0.16 -2.78 9.34 37.16 0.35 -2.43 16 21 N -0.75 -17.71 4.62 -53.43 -0.25 -17.95 16 22 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 23 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 25 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 26 Si 0.88 22.93 27.74 -169.99 -4.71 18.22 16 27 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 29 H -0.28 -6.82 6.52 56.52 0.37 -6.46 16 30 C 0.12 2.10 6.08 -2.54 -0.02 2.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.48 6.35 -51.93 -0.33 0.15 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.41 6.94 -51.93 -0.36 0.05 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.15 0.83 5.60 -52.48 -0.29 0.53 16 39 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 42 H 0.07 0.86 7.40 -51.93 -0.38 0.47 16 43 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 44 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 45 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.04 0.57 7.50 -51.93 -0.39 0.18 16 48 H 0.36 8.57 5.66 -40.82 -0.23 8.34 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 50 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 51 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -35.90 405.10 -9.27 -45.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.29 Total: 5.83 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.68 Total: 1.70 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.11 Total: -62.22 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.58 Total: -14.80 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.90 -9.27 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672240638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.589 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds