Wall clock time and date at job start Wed Apr 1 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 O 1.42894 * 109.47495 * 120.00607 * 2 1 3 5 5 C 1.35646 * 117.00627 * 154.94940 * 4 2 1 6 6 C 1.39346 * 120.53655 * 5.53824 * 5 4 2 7 7 C 1.38306 * 118.43886 * 180.02562 * 6 5 4 8 8 C 1.38766 * 119.44565 * 0.02562 * 7 6 5 9 9 N 1.31376 * 121.06438 * 0.27526 * 8 7 6 10 10 C 1.32855 * 121.69488 * 359.44060 * 9 8 7 11 11 C 1.47831 * 119.78139 * 180.26367 * 10 9 8 12 12 O 1.21564 * 119.99878 * 180.28871 * 11 10 9 13 13 N 1.34772 * 120.00048 * 0.29371 * 11 10 9 14 14 C 1.47021 * 125.64995 * 359.68616 * 13 11 10 15 15 C 1.54335 * 107.26751 * 178.85297 * 14 13 11 16 16 C 1.55161 * 103.02015 * 338.14253 * 15 14 13 17 17 H 1.08995 * 111.03283 * 277.21845 * 16 15 14 18 18 C 1.53000 * 111.00196 * 153.38063 * 16 15 14 19 19 H 1.08997 * 109.47112 * 306.34957 * 18 16 15 20 20 C 1.52998 * 109.47273 * 66.34970 * 18 16 15 21 21 N 1.46499 * 109.46904 * 186.35228 * 18 16 15 22 22 C 1.36937 * 120.00254 * 155.00199 * 21 18 16 23 23 H 1.08005 * 119.99670 * 359.97438 * 22 21 18 24 24 C 1.38810 * 120.00220 * 179.97438 * 22 21 18 25 25 N 1.31618 * 120.00151 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99907 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47227 * 89.99695 * 26 24 22 28 28 H 1.48501 * 109.47108 * 209.99689 * 26 24 22 29 29 H 1.48497 * 109.46995 * 329.99581 * 26 24 22 30 30 C 1.47424 * 125.64942 * 179.97438 * 13 11 10 31 31 H 1.09001 * 109.46788 * 299.99662 * 1 2 3 32 32 H 1.09000 * 109.47569 * 59.99753 * 1 2 3 33 33 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46788 * 240.00338 * 2 1 3 35 35 H 1.08994 * 109.47265 * 60.00202 * 3 2 1 36 36 H 1.09003 * 109.46977 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47103 * 299.99788 * 3 2 1 38 38 H 1.08003 * 120.78373 * 0.04960 * 6 5 4 39 39 H 1.07999 * 120.27724 * 180.02562 * 7 6 5 40 40 H 1.08000 * 119.46558 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.88532 * 298.40238 * 14 13 11 42 42 H 1.09004 * 109.88057 * 59.56339 * 14 13 11 43 43 H 1.09002 * 110.85150 * 219.67464 * 15 14 13 44 44 H 1.09003 * 110.66754 * 96.52596 * 15 14 13 45 45 H 1.09007 * 109.47034 * 59.99882 * 20 18 16 46 46 H 1.08997 * 109.47407 * 179.97438 * 20 18 16 47 47 H 1.09003 * 109.47363 * 300.00058 * 20 18 16 48 48 H 0.97006 * 120.00030 * 334.99460 * 21 18 16 49 49 H 0.96994 * 120.00603 * 180.02562 * 25 24 22 50 50 H 1.09004 * 110.36977 * 322.92976 * 30 13 11 51 51 H 1.09003 * 110.36932 * 85.13908 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 3.2439 -1.2247 1.0975 6 6 4.0446 -1.0284 -0.0259 7 6 5.2988 -1.6107 -0.0507 8 6 5.7212 -2.3675 1.0330 9 7 4.9468 -2.5440 2.0795 10 6 3.7366 -2.0006 2.1520 11 6 2.9029 -2.2221 3.3525 12 8 1.7930 -1.7311 3.4207 13 7 3.3735 -2.9683 4.3714 14 6 4.6889 -3.6233 4.4176 15 6 4.7979 -4.3365 5.7819 16 6 3.7624 -3.5800 6.6555 17 1 4.1882 -2.6619 7.0601 18 6 3.2321 -4.4759 7.7766 19 1 2.8515 -5.4042 7.3507 20 6 4.3642 -4.7908 8.7565 21 7 2.1517 -3.7845 8.4844 22 6 1.1977 -4.5064 9.1506 23 1 1.2414 -5.5856 9.1538 24 6 0.1743 -3.8513 9.8217 25 7 -0.7424 -4.5451 10.4624 26 14 0.0983 -1.9848 9.8155 27 1 -0.7053 -1.5260 8.6541 28 1 -0.5339 -1.5110 11.0729 29 1 1.4735 -1.4337 9.7146 30 6 2.6521 -3.2679 5.6216 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.6941 -0.4352 -0.8577 39 1 5.9442 -1.4775 -0.9064 40 1 6.7007 -2.8220 1.0142 41 1 4.7696 -4.3504 3.6095 42 1 5.4781 -2.8769 4.3274 43 1 5.8010 -4.2318 6.1954 44 1 4.5286 -5.3886 5.6887 45 1 4.7447 -3.8624 9.1825 46 1 3.9863 -5.4287 9.5555 47 1 5.1680 -5.3052 8.2298 48 1 2.1123 -2.8153 8.4813 49 1 -1.4577 -4.0874 10.9311 50 1 2.0694 -2.4035 5.9400 51 1 2.0029 -4.1332 5.4871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672240638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:00 Heat of formation + Delta-G solvation = -37.059524 kcal Electronic energy + Delta-G solvation = -31209.872323 eV Core-core repulsion = 27109.418521 eV Total energy + Delta-G solvation = -4100.453802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.09735 -40.76264 -39.49959 -38.94058 -36.88920 -34.40574 -34.29651 -33.46454 -32.28882 -31.32526 -30.28618 -29.62147 -28.28925 -26.20268 -25.61031 -24.88640 -23.81684 -22.71444 -22.12041 -21.32265 -20.98201 -19.63734 -19.21103 -18.56388 -17.88814 -17.25159 -16.80957 -16.74716 -16.47863 -16.02850 -15.86782 -15.45619 -15.29465 -15.28486 -14.94878 -14.59322 -14.50724 -14.13409 -14.01362 -13.90233 -13.85179 -13.60967 -13.48275 -13.29076 -13.21963 -13.17915 -12.97470 -12.87571 -12.61499 -12.40112 -12.11758 -12.03642 -11.92790 -11.81817 -11.74171 -11.67651 -11.42763 -11.21568 -10.99504 -10.79046 -10.48428 -9.76874 -9.39997 -9.30261 -8.02460 -5.33363 -0.36780 0.22817 1.33262 1.38182 1.42306 1.72698 1.88272 2.07332 2.46571 2.81206 3.09910 3.30072 3.42420 3.53736 3.68609 3.72168 3.76700 3.81140 3.90341 3.96344 4.03130 4.09752 4.13576 4.38352 4.45154 4.47091 4.53726 4.61060 4.62076 4.71209 4.73714 4.76183 4.78819 4.83639 4.89712 5.00166 5.00529 5.02284 5.08952 5.12634 5.16708 5.19491 5.29074 5.35784 5.43162 5.49022 5.63214 5.79478 6.22784 6.26479 6.48401 6.74654 7.08933 7.12112 7.86848 8.03530 9.19554 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.002929 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.153678 B = 9556.525798 C =11450.202161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 C -0.174 4.174 4 O -0.304 6.304 5 C 0.126 3.874 6 C -0.176 4.176 7 C -0.084 4.084 8 C 0.053 3.947 9 N -0.427 5.427 10 C 0.006 3.994 11 C 0.566 3.434 12 O -0.570 6.570 13 N -0.605 5.605 14 C 0.125 3.875 15 C -0.116 4.116 16 C -0.094 4.094 17 H 0.085 0.915 18 C 0.183 3.817 19 H 0.047 0.953 20 C -0.153 4.153 21 N -0.754 5.754 22 C -0.216 4.216 23 H 0.062 0.938 24 C -0.063 4.063 25 N -0.985 5.985 26 Si 0.943 3.057 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.253 1.253 30 C 0.119 3.881 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.203 0.797 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.032 0.968 47 H 0.083 0.917 48 H 0.361 0.639 49 H 0.256 0.744 50 H 0.044 0.956 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.995 8.995 -30.776 37.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 C -0.231 4.231 4 O -0.216 6.216 5 C 0.075 3.925 6 C -0.202 4.202 7 C -0.104 4.104 8 C -0.109 4.109 9 N -0.139 5.139 10 C -0.130 4.130 11 C 0.356 3.644 12 O -0.449 6.449 13 N -0.337 5.337 14 C 0.004 3.996 15 C -0.154 4.154 16 C -0.114 4.114 17 H 0.103 0.897 18 C 0.075 3.925 19 H 0.065 0.935 20 C -0.212 4.212 21 N -0.397 5.397 22 C -0.347 4.347 23 H 0.080 0.920 24 C -0.254 4.254 25 N -0.636 5.636 26 Si 0.772 3.228 27 H -0.218 1.218 28 H -0.220 1.220 29 H -0.178 1.178 30 C -0.004 4.004 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.192 0.808 39 H 0.207 0.793 40 H 0.219 0.781 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.102 0.898 48 H 0.193 0.807 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.353 8.627 -29.832 36.591 hybrid contribution -1.508 1.532 0.005 2.150 sum 17.845 10.160 -29.827 36.212 Atomic orbital electron populations 1.21881 0.92203 1.02777 1.03678 1.22926 0.96214 0.93624 0.86815 1.22368 1.02072 0.94802 1.03905 1.86473 1.28268 1.66766 1.40085 1.20277 0.86226 0.91472 0.94553 1.22158 0.95874 1.04346 0.97795 1.22765 0.94814 0.92538 1.00259 1.23523 1.00644 0.98068 0.88666 1.67805 1.01778 1.17270 1.27064 1.20202 0.94378 1.03543 0.94863 1.18004 0.85482 0.78390 0.82568 1.90811 1.21615 1.51772 1.80730 1.48467 1.19298 1.49449 1.16524 1.22207 0.82906 0.96744 0.97786 1.22814 1.00194 0.99659 0.92721 1.22533 0.95133 0.99882 0.93860 0.89680 1.20398 0.87630 0.93905 0.90523 0.93481 1.22242 0.98437 1.01107 0.99462 1.42887 1.29640 1.04504 1.62700 1.19031 1.01701 0.91554 1.22463 0.92017 1.25356 0.97654 1.01572 1.00821 1.69853 1.17095 1.35936 1.40716 0.85576 0.78475 0.82217 0.76545 1.21767 1.21982 1.17763 1.22082 0.95379 0.99471 0.83434 0.93211 0.87228 0.92902 0.88518 0.93183 0.91486 0.87933 0.80818 0.79307 0.78063 0.90100 0.89802 0.86758 0.89725 0.93144 0.94920 0.89819 0.80662 0.93515 0.93760 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.56 71.98 0.69 -1.84 16 2 C 0.06 1.01 2.85 30.59 0.09 1.09 16 3 C -0.17 -2.23 9.19 71.98 0.66 -1.57 16 4 O -0.30 -8.50 7.86 -68.62 -0.54 -9.04 16 5 C 0.13 3.04 6.62 22.93 0.15 3.19 16 6 C -0.18 -2.30 8.34 22.55 0.19 -2.11 16 7 C -0.08 -0.67 10.10 22.41 0.23 -0.44 16 8 C 0.05 0.62 11.17 84.89 0.95 1.57 16 9 N -0.43 -8.96 6.84 -184.63 -1.26 -10.22 16 10 C 0.01 0.17 6.73 41.93 0.28 0.45 16 11 C 0.57 20.93 7.83 86.78 0.68 21.60 16 12 O -0.57 -25.93 15.39 17.07 0.26 -25.66 16 13 N -0.61 -20.07 3.33 -815.22 -2.71 -22.78 16 14 C 0.13 2.94 5.40 86.73 0.47 3.40 16 15 C -0.12 -2.48 5.59 31.79 0.18 -2.31 16 16 C -0.09 -2.88 2.63 -9.41 -0.02 -2.90 16 17 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 18 C 0.18 6.80 2.41 44.99 0.11 6.90 16 19 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 20 C -0.15 -4.89 9.34 71.98 0.67 -4.22 16 21 N -0.75 -36.24 4.62 -322.95 -1.49 -37.73 16 22 C -0.22 -12.66 10.41 84.03 0.87 -11.78 16 23 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 24 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.98 -65.52 13.97 21.65 0.30 -65.22 16 26 Si 0.94 48.94 27.74 68.60 1.90 50.84 16 27 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 28 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 29 H -0.25 -11.94 6.52 99.48 0.65 -11.29 16 30 C 0.12 4.43 6.08 86.85 0.53 4.96 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.07 6.35 -2.39 -0.02 1.06 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.76 6.94 -2.39 -0.02 0.74 16 37 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.17 1.18 5.60 -2.91 -0.02 1.16 16 39 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 40 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.08 1.76 7.54 -2.39 -0.02 1.74 16 42 H 0.08 1.79 7.40 -2.39 -0.02 1.77 16 43 H 0.11 1.77 8.13 -2.39 -0.02 1.75 16 44 H 0.08 1.74 8.01 -2.39 -0.02 1.72 16 45 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.98 7.50 -2.39 -0.02 1.97 16 48 H 0.36 17.25 5.66 -92.70 -0.52 16.72 16 49 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 50 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 51 H 0.05 2.18 8.04 -2.39 -0.02 2.16 16 Total: -1.00 -87.40 405.10 3.99 -83.41 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.34 Total: 23.80 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 7.18 Total: 12.60 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -5.16 Total: -135.95 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.28 Total: -34.71 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.90 Total: 50.84 kcal Total: -87.40 3.99 -83.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672240638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.353 kcal (2) G-P(sol) polarization free energy of solvation -87.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds