Wall clock time and date at job start Wed Apr 1 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46887 * 2 1 4 4 O 1.42895 * 109.47077 * 120.00414 * 2 1 3 5 5 C 1.35647 * 117.00100 * 154.95192 * 4 2 1 6 6 C 1.39338 * 120.53815 * 5.55141 * 5 4 2 7 7 C 1.38312 * 118.43982 * 180.02562 * 6 5 4 8 8 C 1.38766 * 119.44384 * 359.97438 * 7 6 5 9 9 N 1.31382 * 121.06446 * 359.72001 * 8 7 6 10 10 C 1.32852 * 121.69495 * 0.56972 * 9 8 7 11 11 C 1.47834 * 119.78257 * 179.70536 * 10 9 8 12 12 O 1.21553 * 120.00369 * 179.72815 * 11 10 9 13 13 N 1.34777 * 120.00111 * 0.02562 * 11 10 9 14 14 C 1.47025 * 125.64435 * 359.74182 * 13 11 10 15 15 C 1.54322 * 107.27088 * 181.02420 * 14 13 11 16 16 C 1.55161 * 102.94053 * 22.19594 * 15 14 13 17 17 H 1.09000 * 111.00440 * 82.57460 * 16 15 14 18 18 C 1.53001 * 111.00338 * 206.38303 * 16 15 14 19 19 H 1.09005 * 109.46975 * 59.99984 * 18 16 15 20 20 C 1.52996 * 109.47169 * 300.00076 * 18 16 15 21 21 N 1.46498 * 109.47054 * 180.02562 * 18 16 15 22 22 C 1.36937 * 119.99943 * 205.00502 * 21 18 16 23 23 H 1.07995 * 119.99895 * 359.97438 * 22 21 18 24 24 C 1.38811 * 120.00026 * 180.02562 * 22 21 18 25 25 N 1.31624 * 120.00090 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00119 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47432 * 359.97438 * 26 24 22 28 28 H 1.48510 * 109.47177 * 119.99623 * 26 24 22 29 29 H 1.48502 * 109.47156 * 239.99584 * 26 24 22 30 30 C 1.47418 * 125.65243 * 179.44310 * 13 11 10 31 31 H 1.09001 * 109.47257 * 299.99567 * 1 2 3 32 32 H 1.09000 * 109.47372 * 59.99985 * 1 2 3 33 33 H 1.09006 * 109.47416 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46536 * 240.00245 * 2 1 3 35 35 H 1.09000 * 109.47127 * 300.00166 * 3 2 1 36 36 H 1.09001 * 109.46819 * 60.00164 * 3 2 1 37 37 H 1.08997 * 109.46731 * 179.97438 * 3 2 1 38 38 H 1.08002 * 120.78234 * 359.97438 * 6 5 4 39 39 H 1.08001 * 120.27750 * 179.97438 * 7 6 5 40 40 H 1.07995 * 119.46186 * 179.97438 * 8 7 6 41 41 H 1.08995 * 109.88554 * 300.44380 * 14 13 11 42 42 H 1.09006 * 109.88215 * 61.45373 * 14 13 11 43 43 H 1.08999 * 110.72090 * 140.55575 * 15 14 13 44 44 H 1.08996 * 110.72232 * 263.65876 * 15 14 13 45 45 H 1.09005 * 109.47196 * 179.97438 * 20 18 16 46 46 H 1.08996 * 109.47472 * 300.00279 * 20 18 16 47 47 H 1.09005 * 109.47461 * 60.00447 * 20 18 16 48 48 H 0.96998 * 120.00161 * 24.99636 * 21 18 16 49 49 H 0.96994 * 120.00280 * 180.02562 * 25 24 22 50 50 H 1.09007 * 110.36214 * 274.74370 * 30 13 11 51 51 H 1.09001 * 110.36932 * 37.06165 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2439 -1.2247 1.0976 6 6 4.0447 -1.0281 -0.0257 7 6 5.2990 -1.6104 -0.0505 8 6 5.7216 -2.3665 1.0336 9 7 4.9517 -2.5335 2.0851 10 6 3.7374 -1.9989 2.1529 11 6 2.9041 -2.2193 3.3540 12 8 1.7944 -1.7280 3.4225 13 7 3.3772 -2.9601 4.3758 14 6 4.6956 -3.6089 4.4251 15 6 4.7852 -4.3630 5.7686 16 6 3.2958 -4.5643 6.1540 17 1 2.8752 -5.4331 5.6476 18 6 3.1333 -4.6852 7.6705 19 1 3.4982 -3.7762 8.1487 20 6 3.9371 -5.8851 8.1755 21 7 1.7176 -4.8745 7.9964 22 6 1.2433 -4.5073 9.2274 23 1 1.9130 -4.0785 9.9581 24 6 -0.0980 -4.6871 9.5363 25 7 -0.9141 -5.2101 8.6459 26 14 -0.7448 -4.1868 11.2158 27 1 0.3661 -3.6289 12.0281 28 1 -1.8039 -3.1586 11.0523 29 1 -1.3109 -5.3756 11.9025 30 6 2.6610 -3.2489 5.6315 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4425 0.0005 38 1 3.6938 -0.4357 -0.8578 39 1 5.9441 -1.4777 -0.9064 40 1 6.7008 -2.8217 1.0144 41 1 4.7940 -4.3120 3.5981 42 1 5.4817 -2.8560 4.3669 43 1 5.2833 -5.3238 5.6390 44 1 5.3015 -3.7601 6.5155 45 1 3.8217 -5.9710 9.2560 46 1 3.5723 -6.7941 7.6974 47 1 4.9906 -5.7447 7.9331 48 1 1.1161 -5.2598 7.3401 49 1 -1.8514 -5.3355 8.8616 50 1 2.8114 -2.4415 6.3482 51 1 1.5979 -3.3920 5.4376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672240639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:05 Heat of formation + Delta-G solvation = -17.204343 kcal Electronic energy + Delta-G solvation = -31066.623243 eV Core-core repulsion = 26967.030427 eV Total energy + Delta-G solvation = -4099.592816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21470 -39.52176 -38.65569 -37.46416 -35.06006 -33.60295 -32.87546 -32.19230 -30.68880 -30.14646 -28.44188 -28.02894 -27.63651 -25.15437 -24.19878 -23.75568 -22.71386 -21.45053 -21.33638 -19.84044 -19.51560 -18.43349 -17.59169 -17.10302 -16.81265 -16.07027 -15.71341 -15.59366 -15.06945 -14.95785 -14.60560 -14.51135 -14.03665 -13.83040 -13.53642 -13.44774 -13.28258 -13.01007 -12.81733 -12.66463 -12.56083 -12.50529 -12.43975 -12.21112 -12.02250 -11.86004 -11.42775 -11.33166 -11.27719 -11.10591 -10.82404 -10.66893 -10.50546 -10.38970 -10.12683 -10.09801 -10.06440 -9.75084 -9.53835 -9.50510 -8.83847 -8.72510 -8.22172 -6.87547 -5.68160 -2.96662 0.45989 0.93623 2.77370 2.83690 3.15117 3.49146 3.54478 3.56841 3.73525 4.03865 4.22369 4.36402 4.40675 4.54090 4.63849 4.67042 4.70951 4.80666 4.91438 5.05357 5.15794 5.19496 5.23658 5.31271 5.38789 5.48313 5.57032 5.59984 5.62154 5.65931 5.77218 5.78439 5.90477 5.93012 6.03793 6.05556 6.10040 6.14346 6.27159 6.31039 6.44170 6.51286 6.56930 6.69050 6.76373 6.95181 7.01132 7.16820 7.51349 7.78229 7.81475 8.42751 8.50062 9.61342 10.19237 10.53752 11.54553 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.002647 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.942086 B =10575.876190 C =12437.295647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 C -0.180 4.180 4 O -0.264 6.264 5 C 0.142 3.858 6 C -0.180 4.180 7 C -0.110 4.110 8 C 0.051 3.949 9 N -0.413 5.413 10 C 0.050 3.950 11 C 0.578 3.422 12 O -0.515 6.515 13 N -0.602 5.602 14 C 0.120 3.880 15 C -0.129 4.129 16 C -0.101 4.101 17 H 0.080 0.920 18 C 0.184 3.816 19 H 0.048 0.952 20 C -0.163 4.163 21 N -0.725 5.725 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 C 0.120 3.880 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.038 0.962 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.070 0.930 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.203 8.948 -23.411 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.238 4.238 4 O -0.174 6.174 5 C 0.091 3.909 6 C -0.207 4.207 7 C -0.130 4.130 8 C -0.109 4.109 9 N -0.125 5.125 10 C -0.089 4.089 11 C 0.364 3.636 12 O -0.390 6.390 13 N -0.335 5.335 14 C -0.003 4.003 15 C -0.168 4.168 16 C -0.121 4.121 17 H 0.099 0.901 18 C 0.074 3.926 19 H 0.066 0.934 20 C -0.223 4.223 21 N -0.366 5.366 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 C -0.001 4.001 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.614 8.871 -22.363 28.149 hybrid contribution -0.654 0.629 -0.343 0.970 sum 13.960 9.500 -22.706 28.297 Atomic orbital electron populations 1.21831 0.91791 1.03678 1.03199 1.22614 0.96354 0.92661 0.87119 1.22400 1.01746 0.95994 1.03631 1.86511 1.27217 1.66047 1.37612 1.20019 0.85942 0.91336 0.93583 1.21782 0.95753 1.04498 0.98651 1.22188 0.95523 0.95601 0.99705 1.22742 1.00044 0.98756 0.89384 1.67924 1.02531 1.16802 1.25254 1.20738 0.92868 0.99994 0.95301 1.17228 0.85510 0.79456 0.81377 1.90867 1.19154 1.49285 1.79668 1.48360 1.18179 1.49890 1.17093 1.22047 0.84361 0.96343 0.97515 1.22776 0.97293 1.00505 0.96229 1.22689 0.94216 0.96981 0.98198 0.90123 1.20155 0.86883 0.95861 0.89680 0.93355 1.22434 0.98034 1.00213 1.01649 1.42439 1.03246 1.75214 1.15676 1.19251 0.92544 1.33575 0.91223 0.91208 1.24725 0.96330 1.02009 0.97936 1.69671 1.04122 1.50350 1.33867 0.86161 0.78699 0.77633 0.83964 1.20625 1.21946 1.22021 1.22330 0.97645 0.96756 0.83359 0.90895 0.90559 0.91351 0.91086 0.90796 0.90920 0.92131 0.83660 0.84159 0.81897 0.91155 0.91288 0.90306 0.90684 0.92884 0.93551 0.94327 0.78275 0.93643 0.91143 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 2 C 0.07 0.63 2.85 -26.73 -0.08 0.55 16 3 C -0.18 -1.32 9.19 37.16 0.34 -0.98 16 4 O -0.26 -3.63 7.86 -40.59 -0.32 -3.95 16 5 C 0.14 1.81 6.62 -38.56 -0.26 1.56 16 6 C -0.18 -1.56 8.34 -39.15 -0.33 -1.89 16 7 C -0.11 -0.77 10.10 -39.36 -0.40 -1.17 16 8 C 0.05 0.43 11.17 -17.55 -0.20 0.24 16 9 N -0.41 -4.99 6.84 -9.71 -0.07 -5.06 16 10 C 0.05 0.73 6.73 -82.88 -0.56 0.17 16 11 C 0.58 10.42 7.83 -12.33 -0.10 10.33 16 12 O -0.51 -11.02 15.39 -16.63 -0.26 -11.27 16 13 N -0.60 -10.12 3.32 -171.50 -0.57 -10.69 16 14 C 0.12 1.61 5.40 -3.06 -0.02 1.59 16 15 C -0.13 -1.68 5.28 -24.89 -0.13 -1.82 16 16 C -0.10 -1.69 2.67 -88.35 -0.24 -1.93 16 17 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 18 C 0.18 3.61 2.43 -67.93 -0.17 3.45 16 19 H 0.05 0.97 8.01 -51.93 -0.42 0.56 16 20 C -0.16 -2.89 9.27 37.16 0.34 -2.54 16 21 N -0.72 -18.16 4.97 -53.43 -0.27 -18.43 16 22 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 26 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 C 0.12 2.24 6.24 -2.42 -0.02 2.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 38 H 0.15 0.87 5.60 -52.49 -0.29 0.58 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.07 0.90 7.43 -51.93 -0.39 0.52 16 42 H 0.07 0.87 7.51 -51.93 -0.39 0.48 16 43 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 44 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.55 7.28 -51.93 -0.38 0.18 16 48 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 49 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.07 1.36 7.99 -51.92 -0.41 0.95 16 51 H 0.08 1.80 8.03 -51.93 -0.42 1.38 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -34.93 407.91 -9.62 -44.55 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.32 Total: 7.18 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.67 Total: 1.66 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.18 Total: -62.19 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.58 Total: -15.22 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.93 -9.62 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672240639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.343 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds