Wall clock time and date at job start Wed Apr 1 2020 04:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 N 1.46507 * 109.46416 * 119.99366 * 2 1 3 5 5 C 1.36936 * 120.00044 * 275.00097 * 4 2 1 6 6 H 1.08004 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99978 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47552 * 89.99724 * 9 7 5 11 11 H 1.48502 * 109.46766 * 209.99685 * 9 7 5 12 12 H 1.48507 * 109.47095 * 329.99175 * 9 7 5 13 13 C 1.52996 * 109.47491 * 239.98983 * 2 1 3 14 14 H 1.09003 * 109.50868 * 64.90125 * 13 2 1 15 15 C 1.53288 * 109.51390 * 185.00197 * 13 2 1 16 16 N 1.47155 * 108.38703 * 172.27904 * 15 13 2 17 17 C 1.34779 * 120.97928 * 129.48712 * 16 15 13 18 18 O 1.21279 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99499 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.46581 * 179.97438 * 19 17 16 21 21 C 1.53009 * 109.46899 * 180.02562 * 20 19 17 22 22 C 1.50696 * 109.46988 * 180.02562 * 21 20 19 23 23 C 1.38671 * 120.41933 * 90.00220 * 22 21 20 24 24 C 1.38629 * 118.42136 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.16025 * 0.02562 * 24 23 22 26 26 N 1.31848 * 120.76491 * 359.97438 * 25 24 23 27 27 C 1.31895 * 121.72408 * 359.70256 * 26 25 24 28 28 C 1.47142 * 118.03612 * 309.46948 * 16 15 13 29 29 C 1.53297 * 108.38766 * 50.53055 * 28 16 15 30 30 O 1.42968 * 109.26403 * 307.67587 * 29 28 16 31 31 H 1.08995 * 109.47760 * 300.00558 * 1 2 3 32 32 H 1.09007 * 109.46580 * 60.00865 * 1 2 3 33 33 H 1.09006 * 109.47273 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99818 * 95.00582 * 4 2 1 35 35 H 0.97002 * 119.99814 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.68556 * 52.55488 * 15 13 2 37 37 H 1.09000 * 109.71329 * 292.02348 * 15 13 2 38 38 H 1.09000 * 109.46933 * 299.99418 * 19 17 16 39 39 H 1.08999 * 109.47056 * 60.00283 * 19 17 16 40 40 H 1.08996 * 109.47509 * 299.99192 * 20 19 17 41 41 H 1.08993 * 109.47496 * 60.00199 * 20 19 17 42 42 H 1.09004 * 109.46937 * 300.00047 * 21 20 19 43 43 H 1.09001 * 109.47055 * 59.99468 * 21 20 19 44 44 H 1.07999 * 120.79178 * 359.97327 * 23 22 21 45 45 H 1.07995 * 120.41776 * 180.02562 * 24 23 22 46 46 H 1.07996 * 119.61664 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.61415 * 180.31371 * 27 26 25 48 48 H 1.09008 * 109.68311 * 290.80968 * 28 16 15 49 49 H 1.08998 * 109.71463 * 170.27588 * 28 16 15 50 50 H 1.09002 * 109.51172 * 67.62438 * 29 28 16 51 51 H 1.08997 * 109.51619 * 187.72551 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1964 5 6 2.1489 -0.0073 2.3759 6 1 1.8917 1.0405 2.4243 7 6 2.6119 -0.6614 3.5092 8 7 2.9249 -1.9385 3.4503 9 14 2.7895 0.2704 5.1184 10 1 1.5219 0.1784 5.8863 11 1 3.8944 -0.3222 5.9142 12 1 3.0937 1.6959 4.8340 13 6 2.0401 -0.7214 -1.2491 14 1 1.7506 -0.1601 -2.1374 15 6 3.5678 -0.8320 -1.1885 16 7 4.0157 -1.6869 -2.2994 17 6 4.9969 -1.2856 -3.1316 18 8 5.5243 -0.2053 -2.9710 19 6 5.4387 -2.1793 -4.2618 20 6 6.5563 -1.4916 -5.0486 21 6 7.0044 -2.3986 -6.1965 22 6 8.1056 -1.7216 -6.9711 23 6 9.4326 -1.9105 -6.6157 24 6 10.4121 -1.2682 -7.3571 25 6 10.0361 -0.4659 -8.4181 26 7 8.7640 -0.3092 -8.7275 27 6 7.8060 -0.9097 -8.0483 28 6 3.3609 -2.9929 -2.4744 29 6 1.8432 -2.7772 -2.4723 30 8 1.4741 -2.0339 -1.3081 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6317 1.1529 35 1 3.2481 -2.3957 4.2424 36 1 3.8664 -1.2770 -0.2394 37 1 4.0122 0.1586 -1.2854 38 1 5.8061 -3.1223 -3.8570 39 1 4.5945 -2.3722 -4.9237 40 1 6.1886 -0.5488 -5.4535 41 1 7.4006 -1.2983 -4.3870 42 1 7.3720 -3.3418 -5.7920 43 1 6.1599 -2.5916 -6.8580 44 1 9.6968 -2.5431 -5.7811 45 1 11.4557 -1.3929 -7.1089 46 1 10.7930 0.0383 -9.0004 47 1 6.7753 -0.7612 -8.3345 48 1 3.6386 -3.6556 -1.6546 49 1 3.6677 -3.4339 -3.4228 50 1 1.5530 -2.2233 -3.3651 51 1 1.3381 -3.7430 -2.4628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:58 Heat of formation + Delta-G solvation = -39.322988 kcal Electronic energy + Delta-G solvation = -30202.917898 eV Core-core repulsion = 26102.365945 eV Total energy + Delta-G solvation = -4100.551953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56161 -40.24161 -38.45184 -35.63385 -35.49770 -34.49064 -32.67087 -32.29617 -31.72080 -30.19916 -28.40254 -28.33537 -26.88976 -24.31317 -23.90437 -23.51400 -23.39104 -22.12510 -21.32012 -19.70029 -18.99759 -17.52276 -17.34785 -17.09173 -16.83600 -16.31421 -15.96604 -15.80224 -15.29306 -15.07776 -14.70584 -14.43206 -14.35820 -14.15705 -13.99736 -13.55245 -13.39059 -13.37185 -13.21059 -12.99428 -12.76347 -12.42137 -12.22538 -12.04893 -11.93237 -11.78190 -11.47194 -11.33419 -11.19744 -11.01638 -10.82972 -10.78545 -10.45951 -10.28987 -10.12440 -10.04009 -9.87480 -9.77760 -9.63183 -9.56776 -9.27415 -8.91740 -8.35211 -6.92392 -5.73864 -3.02129 0.75968 0.94121 2.66083 2.95845 3.45418 3.46768 3.50930 3.52119 3.97515 4.08593 4.32556 4.39121 4.42561 4.61053 4.61840 4.64322 4.80364 4.82403 4.85300 4.95389 5.05966 5.07966 5.15233 5.29215 5.31859 5.34552 5.37683 5.40029 5.47728 5.52337 5.61422 5.69384 5.72502 5.78192 5.80127 5.88285 6.00189 6.02715 6.03707 6.23018 6.36176 6.39040 6.41689 6.59190 6.68250 6.79983 7.15155 7.43948 7.47231 7.63826 7.72830 8.20861 8.44418 9.56672 10.13190 10.50223 11.48449 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.001957 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.716708 B =14305.274942 C =15196.387707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.614 5.614 17 C 0.511 3.489 18 O -0.542 6.542 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.073 4.073 24 C -0.170 4.170 25 C 0.090 3.910 26 N -0.485 5.485 27 C 0.100 3.900 28 C 0.071 3.929 29 C 0.047 3.953 30 O -0.359 6.359 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.048 0.952 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.029 -5.199 -24.274 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.348 5.348 17 C 0.299 3.701 18 O -0.419 6.419 19 C -0.179 4.179 20 C -0.137 4.137 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.190 4.190 25 C -0.067 4.067 26 N -0.193 5.193 27 C -0.057 4.057 28 C -0.052 4.052 29 C -0.031 4.031 30 O -0.277 6.277 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.171 0.829 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.005 -4.022 -24.604 26.184 hybrid contribution 0.546 -0.457 1.522 1.681 sum 8.551 -4.479 -23.082 25.019 Atomic orbital electron populations 1.22326 0.98453 1.01589 0.99559 1.20267 0.92839 0.94635 0.85153 0.92248 1.42403 1.77689 1.10934 1.04950 1.19244 1.36408 0.93850 0.87406 0.91192 1.24719 1.02245 0.95954 0.97966 1.69670 1.50891 1.08623 1.28739 0.86217 0.77213 0.78838 0.84082 1.21822 1.21884 1.20794 1.22923 0.91692 0.84035 0.99457 0.92811 1.22428 0.94836 0.96718 0.89673 1.48276 1.36860 1.18936 1.30724 1.20648 0.79177 0.87294 0.82943 1.90706 1.55097 1.23065 1.73042 1.21702 1.00231 0.99601 0.96342 1.21329 0.97969 0.98496 0.95864 1.20597 0.96072 0.98264 0.96621 1.20907 0.95417 0.99305 0.97470 1.21547 0.92274 0.97640 0.98481 1.22167 1.00778 0.98864 0.97207 1.22764 0.93135 0.95744 0.95083 1.67688 1.01231 1.21050 1.29321 1.22707 0.98898 0.92492 0.91557 1.22477 0.94364 0.85391 1.03009 1.22879 0.93311 0.97473 0.89421 1.88134 1.70810 1.27243 1.41555 0.92818 0.94897 0.92475 0.77632 0.93620 0.88406 0.88647 0.88820 0.88920 0.90899 0.90925 0.90518 0.90389 0.84789 0.84782 0.82883 0.82850 0.90035 0.89334 0.93346 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.30 37.16 0.35 -2.60 16 2 C 0.18 3.61 2.80 -67.93 -0.19 3.42 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.62 4.24 -53.42 -0.23 -17.85 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 9 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 C 0.08 1.32 2.57 -26.58 -0.07 1.25 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.50 5.82 -3.54 -0.02 1.48 16 16 N -0.61 -8.68 3.02 -172.28 -0.52 -9.20 16 17 C 0.51 7.10 7.71 -10.98 -0.08 7.01 16 18 O -0.54 -9.77 15.45 5.56 0.09 -9.68 16 19 C -0.14 -1.19 4.07 -27.88 -0.11 -1.30 16 20 C -0.10 -0.86 4.49 -26.73 -0.12 -0.98 16 21 C -0.08 -0.48 5.37 -27.88 -0.15 -0.63 16 22 C -0.13 -1.02 5.15 -104.49 -0.54 -1.55 16 23 C -0.07 -0.55 9.86 -39.28 -0.39 -0.93 16 24 C -0.17 -1.21 10.11 -39.44 -0.40 -1.61 16 25 C 0.09 0.73 11.18 -17.55 -0.20 0.54 16 26 N -0.48 -4.95 10.36 -13.25 -0.14 -5.09 16 27 C 0.10 0.89 10.86 -17.55 -0.19 0.70 16 28 C 0.07 0.76 6.54 -3.54 -0.02 0.74 16 29 C 0.05 0.54 6.98 37.31 0.26 0.80 16 30 O -0.36 -5.92 9.25 -35.23 -0.33 -6.24 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 34 H 0.39 10.29 7.08 -40.82 -0.29 10.00 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.10 2.04 6.94 -51.93 -0.36 1.68 16 37 H 0.10 1.79 7.08 -51.93 -0.37 1.43 16 38 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 39 H 0.09 0.58 7.66 -51.93 -0.40 0.19 16 40 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 43 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 49 H 0.09 0.61 6.06 -51.93 -0.31 0.30 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 412.59 15.07 6.22 6.22 Total: -1.00 -34.54 412.59 -9.74 -44.28 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.41 Total: 8.10 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.12 Total: -0.79 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.16 Total: -59.31 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.24 Total: -15.93 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.54 -9.74 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.955 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds