Wall clock time and date at job start Wed Apr 1 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 N 1.46507 * 109.46416 * 119.99366 * 2 1 3 5 5 C 1.36936 * 120.00044 * 275.00097 * 4 2 1 6 6 H 1.08004 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99978 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47552 * 89.99724 * 9 7 5 11 11 H 1.48502 * 109.46766 * 209.99685 * 9 7 5 12 12 H 1.48507 * 109.47095 * 329.99175 * 9 7 5 13 13 C 1.52996 * 109.47491 * 239.98983 * 2 1 3 14 14 H 1.09003 * 109.50868 * 64.90125 * 13 2 1 15 15 C 1.53288 * 109.51390 * 185.00197 * 13 2 1 16 16 N 1.47155 * 108.38703 * 172.27904 * 15 13 2 17 17 C 1.34779 * 120.97928 * 129.48712 * 16 15 13 18 18 O 1.21279 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99499 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.46581 * 179.97438 * 19 17 16 21 21 C 1.53009 * 109.46899 * 180.02562 * 20 19 17 22 22 C 1.50696 * 109.46988 * 180.02562 * 21 20 19 23 23 C 1.38671 * 120.41933 * 90.00220 * 22 21 20 24 24 C 1.38629 * 118.42136 * 179.97438 * 23 22 21 25 25 C 1.38229 * 119.16025 * 0.02562 * 24 23 22 26 26 N 1.31848 * 120.76491 * 359.97438 * 25 24 23 27 27 C 1.31895 * 121.72408 * 359.70256 * 26 25 24 28 28 C 1.47142 * 118.03612 * 309.46948 * 16 15 13 29 29 C 1.53297 * 108.38766 * 50.53055 * 28 16 15 30 30 O 1.42968 * 109.26403 * 307.67587 * 29 28 16 31 31 H 1.08995 * 109.47760 * 300.00558 * 1 2 3 32 32 H 1.09007 * 109.46580 * 60.00865 * 1 2 3 33 33 H 1.09006 * 109.47273 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99818 * 95.00582 * 4 2 1 35 35 H 0.97002 * 119.99814 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.68556 * 52.55488 * 15 13 2 37 37 H 1.09000 * 109.71329 * 292.02348 * 15 13 2 38 38 H 1.09000 * 109.46933 * 299.99418 * 19 17 16 39 39 H 1.08999 * 109.47056 * 60.00283 * 19 17 16 40 40 H 1.08996 * 109.47509 * 299.99192 * 20 19 17 41 41 H 1.08993 * 109.47496 * 60.00199 * 20 19 17 42 42 H 1.09004 * 109.46937 * 300.00047 * 21 20 19 43 43 H 1.09001 * 109.47055 * 59.99468 * 21 20 19 44 44 H 1.07999 * 120.79178 * 359.97327 * 23 22 21 45 45 H 1.07995 * 120.41776 * 180.02562 * 24 23 22 46 46 H 1.07996 * 119.61664 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.61415 * 180.31371 * 27 26 25 48 48 H 1.09008 * 109.68311 * 290.80968 * 28 16 15 49 49 H 1.08998 * 109.71463 * 170.27588 * 28 16 15 50 50 H 1.09002 * 109.51172 * 67.62438 * 29 28 16 51 51 H 1.08997 * 109.51619 * 187.72551 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1964 5 6 2.1489 -0.0073 2.3759 6 1 1.8917 1.0405 2.4243 7 6 2.6119 -0.6614 3.5092 8 7 2.9249 -1.9385 3.4503 9 14 2.7895 0.2704 5.1184 10 1 1.5219 0.1784 5.8863 11 1 3.8944 -0.3222 5.9142 12 1 3.0937 1.6959 4.8340 13 6 2.0401 -0.7214 -1.2491 14 1 1.7506 -0.1601 -2.1374 15 6 3.5678 -0.8320 -1.1885 16 7 4.0157 -1.6869 -2.2994 17 6 4.9969 -1.2856 -3.1316 18 8 5.5243 -0.2053 -2.9710 19 6 5.4387 -2.1793 -4.2618 20 6 6.5563 -1.4916 -5.0486 21 6 7.0044 -2.3986 -6.1965 22 6 8.1056 -1.7216 -6.9711 23 6 9.4326 -1.9105 -6.6157 24 6 10.4121 -1.2682 -7.3571 25 6 10.0361 -0.4659 -8.4181 26 7 8.7640 -0.3092 -8.7275 27 6 7.8060 -0.9097 -8.0483 28 6 3.3609 -2.9929 -2.4744 29 6 1.8432 -2.7772 -2.4723 30 8 1.4741 -2.0339 -1.3081 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6317 1.1529 35 1 3.2481 -2.3957 4.2424 36 1 3.8664 -1.2770 -0.2394 37 1 4.0122 0.1586 -1.2854 38 1 5.8061 -3.1223 -3.8570 39 1 4.5945 -2.3722 -4.9237 40 1 6.1886 -0.5488 -5.4535 41 1 7.4006 -1.2983 -4.3870 42 1 7.3720 -3.3418 -5.7920 43 1 6.1599 -2.5916 -6.8580 44 1 9.6968 -2.5431 -5.7811 45 1 11.4557 -1.3929 -7.1089 46 1 10.7930 0.0383 -9.0004 47 1 6.7753 -0.7612 -8.3345 48 1 3.6386 -3.6556 -1.6546 49 1 3.6677 -3.4339 -3.4228 50 1 1.5530 -2.2233 -3.3651 51 1 1.3381 -3.7430 -2.4628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675615598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:57 Heat of formation + Delta-G solvation = -61.890156 kcal Electronic energy + Delta-G solvation = -30203.896483 eV Core-core repulsion = 26102.365945 eV Total energy + Delta-G solvation = -4101.530539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46178 -41.04189 -39.65758 -37.09586 -36.28543 -35.73707 -34.17228 -33.26351 -32.43451 -31.55438 -30.14137 -29.28449 -27.78908 -25.88710 -25.05624 -24.47653 -24.23549 -23.16027 -21.97451 -21.20678 -20.06566 -19.31293 -18.29775 -17.91970 -17.58745 -17.44283 -16.98756 -16.84639 -16.46827 -16.06720 -15.98149 -15.86018 -15.24539 -15.10829 -15.03777 -14.90974 -14.64646 -14.23623 -14.13510 -13.96902 -13.92552 -13.56202 -13.36499 -13.13319 -12.96910 -12.86411 -12.77228 -12.59242 -12.48717 -12.46829 -12.18759 -12.10290 -11.77152 -11.68338 -11.63339 -11.49992 -11.07983 -10.94423 -10.79129 -10.68283 -10.35881 -9.85021 -9.56374 -8.95413 -7.90918 -5.17856 0.19455 0.37130 1.47058 1.48148 1.56175 1.60768 1.89433 2.57124 2.83357 2.87812 3.43131 3.49910 3.57576 3.72362 3.78344 3.93151 3.94547 3.99942 4.06352 4.09544 4.10110 4.20496 4.24527 4.26316 4.31052 4.39176 4.46254 4.57064 4.62756 4.64827 4.70031 4.76627 4.83077 4.85471 4.88642 4.89484 5.00025 5.04863 5.10597 5.12448 5.21693 5.23160 5.34129 5.42163 5.45724 5.53230 5.61552 5.83175 6.28237 6.32989 6.40335 7.05246 7.13637 7.37970 8.13580 8.39105 9.32271 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.001957 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.716708 B =14305.274942 C =15196.387707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.171 3.829 3 H 0.056 0.944 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.272 1.272 13 C 0.095 3.905 14 H 0.075 0.925 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.502 3.498 18 O -0.594 6.594 19 C -0.127 4.127 20 C -0.093 4.093 21 C -0.067 4.067 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.172 4.172 25 C 0.073 3.927 26 N -0.518 5.518 27 C 0.082 3.918 28 C 0.069 3.931 29 C 0.039 3.961 30 O -0.386 6.386 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.249 0.751 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.171 0.829 47 H 0.165 0.835 48 H 0.070 0.930 49 H 0.140 0.860 50 H 0.069 0.931 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -6.494 -26.343 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.074 0.926 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.798 3.202 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.197 1.197 13 C 0.036 3.964 14 H 0.093 0.907 15 C -0.029 4.029 16 N -0.349 5.349 17 C 0.294 3.706 18 O -0.475 6.475 19 C -0.166 4.166 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.111 4.111 24 C -0.192 4.192 25 C -0.083 4.083 26 N -0.227 5.227 27 C -0.075 4.075 28 C -0.053 4.053 29 C -0.038 4.038 30 O -0.304 6.304 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.169 0.831 45 H 0.176 0.824 46 H 0.188 0.812 47 H 0.182 0.818 48 H 0.088 0.912 49 H 0.157 0.843 50 H 0.087 0.913 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.532 -5.315 -26.721 28.267 hybrid contribution 0.701 -0.035 2.068 2.184 sum 8.233 -5.351 -24.653 26.536 Atomic orbital electron populations 1.22138 0.96867 1.01189 1.00410 1.20517 0.93818 0.94519 0.84968 0.92647 1.42495 1.78009 1.10417 1.05717 1.19615 1.34546 0.94112 0.88425 0.90797 1.25475 1.03272 0.96884 1.01175 1.69823 1.52743 1.10067 1.29119 0.85217 0.76770 0.78011 0.80243 1.21549 1.22460 1.19723 1.22560 0.90685 0.84868 0.98320 0.90692 1.21970 0.95560 0.95927 0.89468 1.48388 1.37219 1.19704 1.29552 1.21729 0.78035 0.87297 0.83585 1.90685 1.56629 1.25669 1.74475 1.21781 1.01324 0.98963 0.94567 1.21229 0.97181 0.98434 0.96273 1.20561 0.96287 0.97938 0.95653 1.21123 0.96245 0.99128 0.97275 1.21909 0.92382 0.97833 0.98942 1.22469 1.02081 0.98066 0.96542 1.23165 0.93042 0.96268 0.95868 1.67666 1.02276 1.22196 1.30529 1.23002 0.99344 0.92938 0.92182 1.22746 0.93795 0.83477 1.05240 1.23257 0.93926 0.98296 0.88312 1.88086 1.71051 1.26977 1.44334 0.94437 0.91489 0.93413 0.79029 0.94264 0.92578 0.90899 0.86031 0.85189 0.92974 0.93394 0.88606 0.88254 0.83050 0.82435 0.81163 0.81781 0.91189 0.84251 0.91301 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.30 71.98 0.67 -4.62 16 2 C 0.17 6.83 2.80 44.99 0.13 6.95 16 3 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 4 N -0.73 -36.65 4.24 -322.93 -1.37 -38.02 16 5 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 6 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 8 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 9 Si 0.97 47.07 29.55 68.60 2.03 49.09 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.09 3.16 2.57 30.69 0.08 3.24 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.09 3.41 5.82 86.35 0.50 3.92 16 16 N -0.62 -16.71 3.02 -817.36 -2.47 -19.18 16 17 C 0.50 13.37 7.71 87.66 0.68 14.05 16 18 O -0.59 -21.93 15.45 -3.03 -0.05 -21.98 16 19 C -0.13 -1.72 4.07 29.85 0.12 -1.60 16 20 C -0.09 -1.46 4.49 30.60 0.14 -1.32 16 21 C -0.07 -0.62 5.37 29.85 0.16 -0.46 16 22 C -0.14 -1.92 5.15 -19.78 -0.10 -2.03 16 23 C -0.08 -1.13 9.86 22.47 0.22 -0.91 16 24 C -0.17 -2.22 10.11 22.36 0.23 -2.00 16 25 C 0.07 1.16 11.18 84.69 0.95 2.10 16 26 N -0.52 -10.49 10.36 -195.84 -2.03 -12.52 16 27 C 0.08 1.40 10.86 84.67 0.92 2.31 16 28 C 0.07 1.28 6.54 86.36 0.56 1.84 16 29 C 0.04 0.76 6.98 72.08 0.50 1.27 16 30 O -0.39 -12.18 9.25 -148.98 -1.38 -13.56 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 1.80 7.57 -2.38 -0.02 1.79 16 34 H 0.38 20.72 7.08 -92.71 -0.66 20.06 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 36 H 0.06 2.49 6.94 -2.39 -0.02 2.47 16 37 H 0.07 2.91 7.08 -2.39 -0.02 2.89 16 38 H 0.12 1.07 8.02 -2.39 -0.02 1.05 16 39 H 0.13 0.88 7.66 -2.39 -0.02 0.86 16 40 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.10 0.57 8.10 -2.38 -0.02 0.55 16 43 H 0.10 0.54 8.09 -2.39 -0.02 0.52 16 44 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 48 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.14 1.14 6.06 -2.39 -0.01 1.12 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.29 412.59 2.33 -77.96 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.26 Total: 31.07 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 7.05 Total: 6.52 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -5.59 Total: -129.10 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.43 Total: -35.54 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -80.29 2.33 -77.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.074 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds