Wall clock time and date at job start Wed Apr 1 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.36936 * 119.99838 * 84.99783 * 4 2 1 6 6 H 1.07999 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99939 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47449 * 89.99999 * 9 7 5 11 11 H 1.48504 * 109.47189 * 210.00077 * 9 7 5 12 12 H 1.48501 * 109.47514 * 329.99651 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 H 1.08999 * 109.52007 * 175.10103 * 13 2 1 15 15 C 1.53291 * 109.51524 * 295.25445 * 13 2 1 16 16 N 1.47151 * 108.38946 * 172.22144 * 15 13 2 17 17 C 1.34779 * 120.98445 * 129.44249 * 16 15 13 18 18 O 1.21285 * 119.99544 * 0.02715 * 17 16 15 19 19 C 1.50695 * 120.00155 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47184 * 179.97438 * 20 19 17 22 22 C 1.50693 * 109.47214 * 179.97438 * 21 20 19 23 23 C 1.38676 * 120.41501 * 89.99991 * 22 21 20 24 24 C 1.38623 * 118.41962 * 180.02562 * 23 22 21 25 25 C 1.38223 * 119.16301 * 359.97438 * 24 23 22 26 26 N 1.31860 * 120.76341 * 0.02562 * 25 24 23 27 27 C 1.31882 * 121.72082 * 359.70426 * 26 25 24 28 28 C 1.47156 * 118.03661 * 309.46748 * 16 15 13 29 29 C 1.53301 * 108.38368 * 50.53402 * 28 16 15 30 30 O 1.42967 * 109.22093 * 307.69550 * 29 28 16 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 35 35 H 0.97001 * 119.99945 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.68597 * 291.94944 * 15 13 2 37 37 H 1.09007 * 109.68069 * 52.49672 * 15 13 2 38 38 H 1.08993 * 109.47323 * 300.00074 * 19 17 16 39 39 H 1.09000 * 109.47098 * 60.00312 * 19 17 16 40 40 H 1.08998 * 109.46672 * 300.00017 * 20 19 17 41 41 H 1.09000 * 109.46949 * 60.00195 * 20 19 17 42 42 H 1.09005 * 109.46995 * 300.00422 * 21 20 19 43 43 H 1.08998 * 109.46945 * 59.99485 * 21 20 19 44 44 H 1.08007 * 120.79003 * 359.97438 * 23 22 21 45 45 H 1.08002 * 120.42236 * 180.02562 * 24 23 22 46 46 H 1.08005 * 119.62043 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.61538 * 180.31652 * 27 26 25 48 48 H 1.08998 * 109.68210 * 290.80737 * 28 16 15 49 49 H 1.08996 * 109.71133 * 170.27344 * 28 16 15 50 50 H 1.08996 * 109.51237 * 187.77825 * 29 28 16 51 51 H 1.08999 * 109.55432 * 67.64243 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9244 -1.9388 -3.4503 9 14 2.7904 0.2703 -5.1182 10 1 4.1530 0.8545 -5.2029 11 1 2.5793 -0.6606 -6.2558 12 1 1.7811 1.3581 -5.1751 13 6 2.0400 -0.7212 1.2491 14 1 3.1265 -0.7983 1.2071 15 6 1.6296 0.0663 2.4986 16 7 1.9648 -0.7374 3.6848 17 6 2.6682 -0.2081 4.7054 18 8 3.0343 0.9470 4.6547 19 6 2.9997 -1.0516 5.9094 20 6 3.7975 -0.2165 6.9131 21 6 4.1335 -1.0726 8.1358 22 6 4.9198 -0.2503 9.1240 23 6 4.2674 0.4790 10.1067 24 6 5.0313 1.2214 10.9938 25 6 6.4080 1.2098 10.8706 26 7 6.9945 0.5043 9.9234 27 6 6.2999 -0.2175 9.0657 28 6 1.5099 -2.1364 3.7236 29 6 1.9262 -2.8167 2.4144 30 8 1.4705 -2.0312 1.3102 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6316 -1.1527 35 1 3.2478 -2.3960 -4.2423 36 1 2.1708 1.0118 2.5309 37 1 0.5567 0.2576 2.4760 38 1 2.0774 -1.3967 6.3764 39 1 3.5933 -1.9112 5.5985 40 1 4.7199 0.1290 6.4463 41 1 3.2035 0.6430 7.2239 42 1 3.2108 -1.4177 8.6023 43 1 4.7272 -1.9323 7.8252 44 1 3.1898 0.4694 10.1787 45 1 4.5569 1.8009 11.7720 46 1 7.0103 1.7859 11.5575 47 1 6.8156 -0.7866 8.3063 48 1 0.4250 -2.1669 3.8243 49 1 1.9714 -2.6498 4.5670 50 1 1.4810 -3.8102 2.3627 51 1 3.0122 -2.9019 2.3769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:01 Heat of formation + Delta-G solvation = -39.250667 kcal Electronic energy + Delta-G solvation = -29915.207672 eV Core-core repulsion = 25814.658855 eV Total energy + Delta-G solvation = -4100.548817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.63131 -40.36858 -38.54044 -35.70948 -35.53611 -34.55087 -32.77866 -32.47369 -31.76247 -30.31496 -28.60623 -28.07300 -26.70740 -24.81145 -23.94877 -23.52859 -23.45513 -22.13744 -21.39743 -19.68464 -19.15990 -17.59239 -17.36461 -17.08398 -16.88379 -16.43605 -16.02875 -15.88655 -15.49187 -15.07509 -14.84574 -14.48724 -14.44401 -14.27850 -14.05906 -13.65812 -13.44174 -13.36862 -13.27572 -12.98535 -12.77271 -12.56348 -12.35884 -12.21423 -12.10537 -11.89973 -11.56660 -11.33075 -11.13790 -11.09760 -10.85007 -10.72008 -10.54455 -10.28777 -10.17399 -10.06744 -9.84156 -9.82758 -9.76232 -9.63741 -9.32078 -8.89028 -8.50938 -6.92781 -5.73006 -3.01664 0.71803 0.89717 2.49788 2.77450 3.42485 3.45607 3.50821 3.52339 3.95226 4.04158 4.23668 4.30317 4.36950 4.55872 4.58440 4.59379 4.72171 4.74256 4.77389 4.84609 4.99534 5.01242 5.07439 5.18320 5.22287 5.24124 5.31579 5.33343 5.42403 5.47619 5.59990 5.65991 5.66181 5.69741 5.72581 5.80926 5.94045 5.95240 5.98382 5.99274 6.20524 6.32061 6.35545 6.46284 6.65234 6.82373 7.15743 7.25113 7.46141 7.60581 7.72545 8.03713 8.45223 9.57150 10.14644 10.51361 11.49435 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.001738 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.947600 B =16110.637689 C =16637.222480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.615 5.615 17 C 0.513 3.487 18 O -0.540 6.540 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.130 4.130 23 C -0.074 4.074 24 C -0.171 4.171 25 C 0.090 3.910 26 N -0.484 5.484 27 C 0.102 3.898 28 C 0.072 3.928 29 C 0.045 3.955 30 O -0.358 6.358 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -1.152 30.374 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.349 5.349 17 C 0.301 3.699 18 O -0.417 6.417 19 C -0.179 4.179 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.100 4.100 24 C -0.191 4.191 25 C -0.067 4.067 26 N -0.192 5.192 27 C -0.056 4.056 28 C -0.051 4.051 29 C -0.033 4.033 30 O -0.276 6.276 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.172 0.828 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.121 0.879 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.278 -0.461 29.997 30.002 hybrid contribution -0.684 0.127 -0.641 0.946 sum -0.406 -0.334 29.356 29.361 Atomic orbital electron populations 1.22412 0.98659 1.01597 0.99531 1.20198 0.92828 0.94624 0.84987 0.92317 1.42348 1.77861 1.10947 1.04888 1.19255 1.36562 0.93861 0.87352 0.91163 1.24736 1.02223 0.95959 0.98019 1.69677 1.50804 1.08628 1.28805 0.86202 0.77762 0.78584 0.83709 1.21784 1.21818 1.20779 1.22971 0.97591 0.82982 0.94754 0.91902 1.22483 1.01880 0.95882 0.83840 1.48233 1.54929 1.12693 1.19058 1.20694 0.77314 0.87962 0.83894 1.90712 1.52911 1.18019 1.80089 1.21708 1.02272 0.99511 0.94412 1.21335 1.01008 0.97856 0.93488 1.20589 0.99631 0.97295 0.94033 1.20898 0.95468 0.99373 0.97443 1.21528 1.00582 0.94416 0.93455 1.22160 0.95514 1.00734 1.00674 1.22780 0.92565 0.95941 0.95378 1.67699 1.41202 1.06563 1.03749 1.22729 0.90710 0.95686 0.96426 1.22510 1.00823 0.81777 1.00005 1.22905 0.99504 0.95231 0.85671 1.88110 1.67737 1.25718 1.46029 0.94696 0.92449 0.92896 0.77689 0.93586 0.88281 0.90196 0.88827 0.88675 0.90776 0.90996 0.90551 0.90305 0.84857 0.84798 0.82860 0.82784 0.90415 0.89132 0.87868 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.06 37.16 0.34 -2.64 16 2 C 0.18 3.70 2.77 -67.93 -0.19 3.51 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.27 5.10 -53.43 -0.27 -18.54 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 9 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.08 1.30 2.61 -26.58 -0.07 1.23 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.18 5.82 -3.54 -0.02 1.16 16 16 N -0.61 -7.43 3.02 -172.27 -0.52 -7.95 16 17 C 0.51 6.26 7.71 -10.99 -0.08 6.17 16 18 O -0.54 -8.77 15.45 5.55 0.09 -8.69 16 19 C -0.14 -1.02 4.07 -27.88 -0.11 -1.13 16 20 C -0.10 -0.77 4.49 -26.73 -0.12 -0.89 16 21 C -0.08 -0.42 5.37 -27.89 -0.15 -0.57 16 22 C -0.13 -0.94 5.15 -104.49 -0.54 -1.48 16 23 C -0.07 -0.49 9.86 -39.28 -0.39 -0.88 16 24 C -0.17 -1.10 10.11 -39.44 -0.40 -1.50 16 25 C 0.09 0.70 11.18 -17.55 -0.20 0.50 16 26 N -0.48 -4.81 10.36 -13.25 -0.14 -4.94 16 27 C 0.10 0.87 10.86 -17.55 -0.19 0.68 16 28 C 0.07 0.65 6.54 -3.53 -0.02 0.63 16 29 C 0.05 0.52 6.99 37.31 0.26 0.78 16 30 O -0.36 -5.91 9.24 -35.23 -0.33 -6.24 16 31 H 0.03 0.53 6.41 -51.93 -0.33 0.20 16 32 H 0.06 1.11 7.56 -51.93 -0.39 0.71 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.39 10.65 7.58 -40.82 -0.31 10.34 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 37 H 0.08 1.10 6.26 -51.92 -0.33 0.78 16 38 H 0.09 0.48 8.01 -51.93 -0.42 0.07 16 39 H 0.09 0.54 7.66 -51.93 -0.40 0.14 16 40 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 43 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.52 6.06 -51.93 -0.31 0.20 16 50 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -35.45 411.30 -9.71 -45.16 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.31 Total: 6.83 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.13 Total: -1.76 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.21 Total: -59.08 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.24 Total: -14.92 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.45 -9.71 -45.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.911 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds