Wall clock time and date at job start Wed Apr 1 2020 04:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.36936 * 119.99838 * 84.99783 * 4 2 1 6 6 H 1.07999 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99939 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47449 * 89.99999 * 9 7 5 11 11 H 1.48504 * 109.47189 * 210.00077 * 9 7 5 12 12 H 1.48501 * 109.47514 * 329.99651 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 H 1.08999 * 109.52007 * 175.10103 * 13 2 1 15 15 C 1.53291 * 109.51524 * 295.25445 * 13 2 1 16 16 N 1.47151 * 108.38946 * 172.22144 * 15 13 2 17 17 C 1.34779 * 120.98445 * 129.44249 * 16 15 13 18 18 O 1.21285 * 119.99544 * 0.02715 * 17 16 15 19 19 C 1.50695 * 120.00155 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47184 * 179.97438 * 20 19 17 22 22 C 1.50693 * 109.47214 * 179.97438 * 21 20 19 23 23 C 1.38676 * 120.41501 * 89.99991 * 22 21 20 24 24 C 1.38623 * 118.41962 * 180.02562 * 23 22 21 25 25 C 1.38223 * 119.16301 * 359.97438 * 24 23 22 26 26 N 1.31860 * 120.76341 * 0.02562 * 25 24 23 27 27 C 1.31882 * 121.72082 * 359.70426 * 26 25 24 28 28 C 1.47156 * 118.03661 * 309.46748 * 16 15 13 29 29 C 1.53301 * 108.38368 * 50.53402 * 28 16 15 30 30 O 1.42967 * 109.22093 * 307.69550 * 29 28 16 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 35 35 H 0.97001 * 119.99945 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.68597 * 291.94944 * 15 13 2 37 37 H 1.09007 * 109.68069 * 52.49672 * 15 13 2 38 38 H 1.08993 * 109.47323 * 300.00074 * 19 17 16 39 39 H 1.09000 * 109.47098 * 60.00312 * 19 17 16 40 40 H 1.08998 * 109.46672 * 300.00017 * 20 19 17 41 41 H 1.09000 * 109.46949 * 60.00195 * 20 19 17 42 42 H 1.09005 * 109.46995 * 300.00422 * 21 20 19 43 43 H 1.08998 * 109.46945 * 59.99485 * 21 20 19 44 44 H 1.08007 * 120.79003 * 359.97438 * 23 22 21 45 45 H 1.08002 * 120.42236 * 180.02562 * 24 23 22 46 46 H 1.08005 * 119.62043 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.61538 * 180.31652 * 27 26 25 48 48 H 1.08998 * 109.68210 * 290.80737 * 28 16 15 49 49 H 1.08996 * 109.71133 * 170.27344 * 28 16 15 50 50 H 1.08996 * 109.51237 * 187.77825 * 29 28 16 51 51 H 1.08999 * 109.55432 * 67.64243 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9244 -1.9388 -3.4503 9 14 2.7904 0.2703 -5.1182 10 1 4.1530 0.8545 -5.2029 11 1 2.5793 -0.6606 -6.2558 12 1 1.7811 1.3581 -5.1751 13 6 2.0400 -0.7212 1.2491 14 1 3.1265 -0.7983 1.2071 15 6 1.6296 0.0663 2.4986 16 7 1.9648 -0.7374 3.6848 17 6 2.6682 -0.2081 4.7054 18 8 3.0343 0.9470 4.6547 19 6 2.9997 -1.0516 5.9094 20 6 3.7975 -0.2165 6.9131 21 6 4.1335 -1.0726 8.1358 22 6 4.9198 -0.2503 9.1240 23 6 4.2674 0.4790 10.1067 24 6 5.0313 1.2214 10.9938 25 6 6.4080 1.2098 10.8706 26 7 6.9945 0.5043 9.9234 27 6 6.2999 -0.2175 9.0657 28 6 1.5099 -2.1364 3.7236 29 6 1.9262 -2.8167 2.4144 30 8 1.4705 -2.0312 1.3102 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6316 -1.1527 35 1 3.2478 -2.3960 -4.2423 36 1 2.1708 1.0118 2.5309 37 1 0.5567 0.2576 2.4760 38 1 2.0774 -1.3967 6.3764 39 1 3.5933 -1.9112 5.5985 40 1 4.7199 0.1290 6.4463 41 1 3.2035 0.6430 7.2239 42 1 3.2108 -1.4177 8.6023 43 1 4.7272 -1.9323 7.8252 44 1 3.1898 0.4694 10.1787 45 1 4.5569 1.8009 11.7720 46 1 7.0103 1.7859 11.5575 47 1 6.8156 -0.7866 8.3063 48 1 0.4250 -2.1669 3.8243 49 1 1.9714 -2.6498 4.5670 50 1 1.4810 -3.8102 2.3627 51 1 3.0122 -2.9019 2.3769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675615605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:00 Heat of formation + Delta-G solvation = -62.958218 kcal Electronic energy + Delta-G solvation = -29916.235709 eV Core-core repulsion = 25814.658855 eV Total energy + Delta-G solvation = -4101.576853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.49296 -41.04644 -39.68270 -37.11876 -36.28683 -35.71198 -34.34998 -33.25887 -32.45310 -31.74632 -29.95171 -29.10920 -27.66212 -26.37250 -24.96375 -24.47646 -24.24860 -23.20738 -21.98631 -21.17638 -20.06138 -19.29816 -18.27393 -17.91520 -17.62669 -17.44265 -16.99820 -16.82513 -16.63351 -16.09044 -15.96434 -15.91815 -15.27316 -15.22603 -15.08180 -14.91717 -14.50233 -14.20976 -14.19945 -13.99739 -13.91734 -13.67656 -13.37206 -13.19819 -12.99049 -12.87425 -12.82770 -12.57334 -12.43991 -12.35272 -12.18424 -12.10170 -11.82741 -11.64847 -11.62759 -11.54988 -11.15292 -10.93514 -10.80415 -10.68191 -10.35322 -9.85146 -9.56620 -9.01084 -7.92854 -5.21417 0.19496 0.37926 1.46769 1.48541 1.56771 1.59192 1.87041 2.56237 2.81091 2.87860 3.40736 3.48050 3.57244 3.62001 3.78124 3.93305 3.94226 4.00230 4.02977 4.09516 4.10873 4.17197 4.24499 4.27006 4.35701 4.39519 4.43003 4.56865 4.60593 4.62072 4.65542 4.71422 4.77688 4.85536 4.85846 4.89346 4.98979 5.00733 5.09048 5.12620 5.23070 5.23986 5.31797 5.41690 5.45595 5.51061 5.61530 5.83690 6.26786 6.29453 6.36417 7.05813 7.11968 7.35116 8.10693 8.35801 9.30582 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.001738 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.947600 B =16110.637689 C =16637.222480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.269 1.269 13 C 0.093 3.907 14 H 0.037 0.963 15 C 0.092 3.908 16 N -0.617 5.617 17 C 0.505 3.495 18 O -0.591 6.591 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.067 4.067 22 C -0.135 4.135 23 C -0.082 4.082 24 C -0.171 4.171 25 C 0.072 3.928 26 N -0.520 5.520 27 C 0.079 3.921 28 C 0.076 3.924 29 C 0.034 3.966 30 O -0.384 6.384 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.157 0.843 45 H 0.160 0.840 46 H 0.170 0.830 47 H 0.160 0.840 48 H 0.093 0.907 49 H 0.135 0.865 50 H 0.129 0.871 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -1.852 32.685 32.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.194 1.194 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.351 5.351 17 C 0.296 3.704 18 O -0.471 6.471 19 C -0.169 4.169 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.137 4.137 23 C -0.108 4.108 24 C -0.190 4.190 25 C -0.085 4.085 26 N -0.229 5.229 27 C -0.078 4.078 28 C -0.045 4.045 29 C -0.043 4.043 30 O -0.303 6.303 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.174 0.826 45 H 0.178 0.822 46 H 0.187 0.813 47 H 0.177 0.823 48 H 0.111 0.889 49 H 0.153 0.847 50 H 0.147 0.853 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.467 -1.157 32.354 32.408 hybrid contribution -0.154 0.356 -1.258 1.316 sum -1.621 -0.801 31.096 31.148 Atomic orbital electron populations 1.22198 0.96807 1.01217 1.00411 1.20438 0.93976 0.94409 0.84657 0.92735 1.42512 1.78314 1.10449 1.05948 1.19651 1.35015 0.94192 0.88374 0.90629 1.25550 1.03013 0.96902 1.01414 1.69836 1.52548 1.10187 1.29338 0.85154 0.77800 0.77452 0.79442 1.21601 1.22175 1.19431 1.22507 0.95770 0.83951 0.94465 0.94542 1.22154 1.02009 0.95075 0.83976 1.48365 1.54849 1.13771 1.18073 1.21654 0.76038 0.87849 0.84844 1.90695 1.54697 1.20539 1.81172 1.21788 1.04188 0.98965 0.91916 1.21233 0.99511 0.97961 0.94450 1.20563 1.00663 0.96790 0.92492 1.21122 0.95068 0.99569 0.97971 1.21918 1.01858 0.93892 0.93085 1.22481 0.95035 1.00452 1.01072 1.23177 0.93748 0.96117 0.95441 1.67656 1.42540 1.07783 1.04922 1.22970 0.91749 0.96269 0.96793 1.22725 1.02130 0.79798 0.99887 1.23263 0.99483 0.95996 0.85585 1.88055 1.67966 1.25522 1.48730 0.91185 0.93360 0.94542 0.79250 0.94127 0.90043 0.89168 0.85173 0.86090 0.93581 0.92656 0.88108 0.88858 0.82558 0.82230 0.81259 0.82272 0.88855 0.84710 0.85335 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.06 71.98 0.65 -4.66 16 2 C 0.17 7.09 2.77 44.99 0.12 7.22 16 3 H 0.05 2.25 8.08 -2.39 -0.02 2.23 16 4 N -0.73 -38.18 5.10 -322.95 -1.65 -39.83 16 5 C -0.24 -13.67 9.93 84.03 0.83 -12.84 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 8 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 9 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.09 3.17 2.61 30.69 0.08 3.25 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C 0.09 2.58 5.82 86.35 0.50 3.08 16 16 N -0.62 -13.59 3.02 -817.34 -2.47 -16.06 16 17 C 0.51 11.42 7.71 87.66 0.68 12.09 16 18 O -0.59 -19.28 15.45 -3.04 -0.05 -19.32 16 19 C -0.13 -1.41 4.07 29.85 0.12 -1.29 16 20 C -0.09 -1.27 4.49 30.60 0.14 -1.13 16 21 C -0.07 -0.53 5.37 29.85 0.16 -0.37 16 22 C -0.14 -1.76 5.15 -19.78 -0.10 -1.86 16 23 C -0.08 -0.92 9.86 22.47 0.22 -0.70 16 24 C -0.17 -1.94 10.11 22.36 0.23 -1.71 16 25 C 0.07 1.08 11.18 84.68 0.95 2.03 16 26 N -0.52 -10.51 10.36 -195.84 -2.03 -12.54 16 27 C 0.08 1.34 10.86 84.67 0.92 2.26 16 28 C 0.08 1.08 6.54 86.36 0.56 1.64 16 29 C 0.03 0.70 6.99 72.08 0.50 1.21 16 30 O -0.38 -12.44 9.24 -148.98 -1.38 -13.81 16 31 H 0.07 2.02 6.41 -2.39 -0.02 2.00 16 32 H 0.05 1.83 7.56 -2.39 -0.02 1.81 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.38 21.29 7.58 -92.71 -0.70 20.59 16 35 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.08 2.59 7.08 -2.39 -0.02 2.57 16 37 H 0.09 2.33 6.26 -2.38 -0.01 2.32 16 38 H 0.13 0.56 8.01 -2.39 -0.02 0.55 16 39 H 0.12 0.78 7.66 -2.39 -0.02 0.76 16 40 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 41 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 42 H 0.10 0.35 8.10 -2.38 -0.02 0.34 16 43 H 0.09 0.50 8.09 -2.39 -0.02 0.48 16 44 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 47 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 48 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.14 0.74 6.06 -2.39 -0.01 0.73 16 50 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.63 411.30 2.00 -79.64 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.22 Total: 28.80 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.04 Total: 4.19 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.86 Total: -128.61 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.42 Total: -33.14 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -81.63 2.00 -79.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.677 kcal (2) G-P(sol) polarization free energy of solvation -81.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds