Wall clock time and date at job start Wed Apr 1 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46720 * 2 1 4 4 N 1.46498 * 109.46702 * 239.99989 * 2 1 3 5 5 C 1.36941 * 120.00054 * 85.00559 * 4 2 1 6 6 H 1.08001 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99793 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00125 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47209 * 59.99587 * 9 7 5 11 11 H 1.48497 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46906 * 299.99755 * 9 7 5 13 13 C 1.52997 * 109.46976 * 120.00146 * 2 1 3 14 14 H 1.09002 * 109.50909 * 300.09882 * 13 2 1 15 15 C 1.53295 * 109.51227 * 180.02562 * 13 2 1 16 16 N 1.47148 * 108.38524 * 187.72475 * 15 13 2 17 17 C 1.34780 * 120.97846 * 230.51363 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47592 * 179.97438 * 21 20 19 23 23 C 1.38672 * 120.41976 * 269.72355 * 22 21 20 24 24 C 1.38634 * 118.42272 * 179.78075 * 23 22 21 25 25 C 1.38233 * 119.15664 * 0.51014 * 24 23 22 26 26 N 1.31859 * 120.76492 * 359.73336 * 25 24 23 27 27 C 1.31886 * 121.72525 * 359.97438 * 26 25 24 28 28 C 1.47149 * 118.03988 * 50.78317 * 16 15 13 29 29 C 1.53711 * 108.15830 * 309.16197 * 28 16 15 30 30 O 1.42961 * 109.15228 * 52.53696 * 29 28 16 31 31 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47286 * 300.00095 * 1 2 3 33 33 H 1.09003 * 109.47347 * 59.99602 * 1 2 3 34 34 H 0.96999 * 119.99959 * 264.99561 * 4 2 1 35 35 H 0.97003 * 120.00311 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.68299 * 67.99540 * 15 13 2 37 37 H 1.09004 * 109.71142 * 307.46311 * 15 13 2 38 38 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 39 39 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 40 40 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 42 42 H 1.09002 * 109.47103 * 300.00247 * 21 20 19 43 43 H 1.09001 * 109.47066 * 60.00169 * 21 20 19 44 44 H 1.07997 * 120.78830 * 0.02562 * 23 22 21 45 45 H 1.07989 * 120.42203 * 180.26393 * 24 23 22 46 46 H 1.07993 * 119.61818 * 179.74294 * 25 24 23 47 47 H 1.07999 * 119.61822 * 180.02562 * 27 26 25 48 48 H 1.08999 * 109.68019 * 68.93392 * 28 16 15 49 49 H 1.08992 * 109.68498 * 189.49193 * 28 16 15 50 50 H 1.09007 * 109.65849 * 292.56744 * 29 28 16 51 51 H 1.09004 * 109.48517 * 172.40113 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9260 -1.9385 -3.4497 9 14 2.7900 0.2701 -5.1183 10 1 3.7444 1.3932 -4.9372 11 1 3.3001 -0.6480 -6.1681 12 1 1.4672 0.8059 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.6755 -0.2090 2.1396 15 6 3.5729 -0.7213 1.2505 16 7 4.0361 -1.5759 2.3552 17 6 4.9514 -1.1316 3.2392 18 8 5.4063 -0.0126 3.1305 19 6 5.4106 -2.0259 4.3620 20 6 6.4439 -1.2856 5.2135 21 6 6.9096 -2.1931 6.3537 22 6 7.9279 -1.4643 7.1921 23 6 9.2786 -1.5532 6.8910 24 6 10.1790 -0.8621 7.6870 25 6 9.7046 -0.1211 8.7532 26 7 8.4132 -0.0633 9.0129 27 6 7.5278 -0.7031 8.2739 28 6 3.4749 -2.9319 2.4629 29 6 1.9428 -2.8222 2.4057 30 8 1.5692 -2.0712 1.2480 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2493 -2.3958 -4.2418 36 1 3.9399 0.2951 1.3938 37 1 3.9414 -1.1144 0.3030 38 1 4.5564 -2.2983 4.9819 39 1 5.8610 -2.9277 3.9473 40 1 7.2980 -1.0134 4.5933 41 1 5.9940 -0.3836 5.6282 42 1 6.0553 -2.4649 6.9738 43 1 7.3595 -3.0954 5.9394 44 1 9.6206 -2.1437 6.0540 45 1 11.2378 -0.9052 7.4791 46 1 10.3998 0.4168 9.3806 47 1 6.4780 -0.6318 8.5172 48 1 3.8330 -3.5441 1.6353 49 1 3.7769 -3.3801 3.4094 50 1 1.5776 -2.3178 3.3004 51 1 1.5087 -3.8204 2.3478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:04 Heat of formation + Delta-G solvation = -39.743865 kcal Electronic energy + Delta-G solvation = -30182.599179 eV Core-core repulsion = 26082.028976 eV Total energy + Delta-G solvation = -4100.570203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.56515 -40.24264 -38.45068 -35.64035 -35.48323 -34.48498 -32.67770 -32.30017 -31.72421 -30.19632 -28.38874 -28.33948 -26.87863 -24.33430 -23.90866 -23.49827 -23.40353 -22.10965 -21.31908 -19.72718 -18.99663 -17.52447 -17.34077 -17.08970 -16.84055 -16.31319 -15.96946 -15.81196 -15.30054 -15.06542 -14.70068 -14.43563 -14.36077 -14.16489 -13.99434 -13.54683 -13.39462 -13.37471 -13.19196 -13.01279 -12.76987 -12.42556 -12.23397 -12.05911 -11.92232 -11.79655 -11.47759 -11.35604 -11.17335 -11.02183 -10.82189 -10.77561 -10.47598 -10.30517 -10.12929 -10.04574 -9.88076 -9.78178 -9.63559 -9.55951 -9.27840 -8.90723 -8.35688 -6.91542 -5.72890 -3.01174 0.75509 0.93649 2.64966 2.95057 3.46227 3.46386 3.50864 3.51443 3.97789 4.08177 4.32015 4.38555 4.42067 4.61299 4.61718 4.63858 4.79696 4.81624 4.84658 4.95415 5.05720 5.07665 5.15087 5.28732 5.31495 5.34031 5.37211 5.39988 5.47419 5.52263 5.62330 5.69811 5.71965 5.77685 5.80246 5.87331 5.99690 6.02337 6.03056 6.22450 6.35686 6.37205 6.42245 6.57809 6.67514 6.79137 7.14177 7.43198 7.47918 7.63400 7.72941 8.19681 8.45515 9.57706 10.14761 10.52147 11.49305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.001929 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.827621 B =14508.647993 C =15298.082689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.716 5.716 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.079 3.921 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.614 5.614 17 C 0.511 3.489 18 O -0.542 6.542 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.073 4.073 24 C -0.170 4.170 25 C 0.089 3.911 26 N -0.485 5.485 27 C 0.101 3.899 28 C 0.071 3.929 29 C 0.048 3.952 30 O -0.358 6.358 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.390 0.610 35 H 0.254 0.746 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.049 0.951 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -4.776 24.489 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.348 5.348 17 C 0.299 3.701 18 O -0.420 6.420 19 C -0.179 4.179 20 C -0.137 4.137 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.190 4.190 25 C -0.067 4.067 26 N -0.193 5.193 27 C -0.056 4.056 28 C -0.052 4.052 29 C -0.031 4.031 30 O -0.276 6.276 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.172 0.828 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.989 -3.635 24.842 26.347 hybrid contribution 0.617 -0.391 -1.517 1.683 sum 8.606 -4.026 23.326 25.187 Atomic orbital electron populations 1.22351 0.98534 1.01537 0.99621 1.20261 0.92752 0.94656 0.85223 0.92265 1.42367 1.77679 1.10984 1.04870 1.19202 1.36534 0.93806 0.87452 0.91276 1.24715 1.02251 0.95941 0.97945 1.69661 1.50789 1.08612 1.28848 0.86298 0.77733 0.78607 0.83716 1.21329 1.21801 1.21350 1.22910 0.92327 0.83292 0.99521 0.92827 1.22426 0.94861 0.96583 0.89821 1.48274 1.41973 1.15337 1.29203 1.20651 0.78743 0.87837 0.82821 1.90704 1.56045 1.20742 1.74472 1.21702 1.00588 0.99423 0.96171 1.21326 0.98671 0.98167 0.95487 1.20594 0.97047 0.97821 0.96092 1.20910 0.95190 0.99513 0.97491 1.21549 0.92614 0.97312 0.98474 1.22167 1.01116 0.98833 0.96896 1.22768 0.92209 0.96261 0.95492 1.67689 1.03012 1.19350 1.29237 1.22707 0.99453 0.92448 0.91038 1.22569 0.95471 0.83990 1.03203 1.22959 0.92960 0.97544 0.89588 1.88110 1.75311 1.23582 1.40633 0.92561 0.94882 0.92761 0.77532 0.93579 0.88690 0.88551 0.88899 0.88821 0.90933 0.90896 0.90383 0.90518 0.84792 0.84782 0.82881 0.82847 0.89981 0.89332 0.93312 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.35 37.16 0.35 -2.62 16 2 C 0.18 3.61 2.73 -67.93 -0.19 3.43 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.64 4.29 -53.43 -0.23 -17.87 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 9 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.08 1.33 2.52 -26.58 -0.07 1.27 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.08 1.48 5.86 -3.54 -0.02 1.46 16 16 N -0.61 -8.62 3.01 -172.03 -0.52 -9.14 16 17 C 0.51 7.04 7.71 -10.98 -0.08 6.95 16 18 O -0.54 -9.68 15.45 5.56 0.09 -9.60 16 19 C -0.14 -1.18 4.07 -27.88 -0.11 -1.29 16 20 C -0.10 -0.85 4.49 -26.74 -0.12 -0.97 16 21 C -0.08 -0.48 5.37 -27.89 -0.15 -0.63 16 22 C -0.13 -1.01 5.15 -104.48 -0.54 -1.55 16 23 C -0.07 -0.54 9.86 -39.27 -0.39 -0.93 16 24 C -0.17 -1.20 10.11 -39.44 -0.40 -1.60 16 25 C 0.09 0.73 11.18 -17.54 -0.20 0.53 16 26 N -0.48 -4.93 10.36 -13.25 -0.14 -5.06 16 27 C 0.10 0.89 10.86 -17.55 -0.19 0.70 16 28 C 0.07 0.77 6.57 -3.32 -0.02 0.74 16 29 C 0.05 0.55 7.00 37.53 0.26 0.81 16 30 O -0.36 -5.96 9.23 -35.23 -0.33 -6.28 16 31 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 10.35 7.21 -40.82 -0.29 10.06 16 35 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.76 7.08 -51.93 -0.37 1.39 16 37 H 0.10 1.99 7.28 -51.93 -0.38 1.61 16 38 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.09 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 0.61 6.05 -51.93 -0.31 0.30 16 50 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 51 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -34.55 413.22 -9.75 -44.30 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.44 Total: 8.03 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.11 Total: -0.84 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.16 Total: -59.27 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.24 Total: -15.88 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.55 -9.75 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.559 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds