Wall clock time and date at job start Wed Apr 1 2020 04:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47719 * 2 1 4 4 N 1.46503 * 109.47396 * 120.01002 * 2 1 3 5 5 C 1.36942 * 119.99484 * 274.99399 * 4 2 1 6 6 H 1.08004 * 120.00187 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00018 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00156 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47013 * 90.00138 * 9 7 5 11 11 H 1.48500 * 109.46929 * 209.99958 * 9 7 5 12 12 H 1.48497 * 109.47170 * 330.00140 * 9 7 5 13 13 C 1.53002 * 109.46724 * 240.00384 * 2 1 3 14 14 H 1.09004 * 109.51463 * 185.10121 * 13 2 1 15 15 C 1.53293 * 109.51447 * 65.00082 * 13 2 1 16 16 N 1.47149 * 108.38751 * 187.77400 * 15 13 2 17 17 C 1.34783 * 120.98158 * 230.51453 * 16 15 13 18 18 O 1.21691 * 119.99828 * 359.69802 * 17 16 15 19 19 C 1.46680 * 119.99700 * 179.70208 * 17 16 15 20 20 C 1.38047 * 126.20053 * 208.04014 * 19 17 16 21 21 C 1.39252 * 106.97543 * 180.02562 * 20 19 17 22 22 C 1.35963 * 108.03605 * 0.04562 * 21 20 19 23 23 N 1.35113 * 108.76830 * 359.64818 * 22 21 20 24 24 H 0.96999 * 125.69130 * 180.35937 * 23 22 21 25 25 C 1.51027 * 123.84845 * 179.81808 * 22 21 20 26 26 C 1.53320 * 108.40949 * 343.34995 * 25 22 21 27 27 C 1.53103 * 109.52737 * 50.17574 * 26 25 22 28 28 C 1.50843 * 127.70347 * 180.13723 * 21 20 19 29 29 C 1.47154 * 118.03800 * 50.78479 * 16 15 13 30 30 C 1.53717 * 108.16005 * 309.16184 * 29 16 15 31 31 O 1.42956 * 109.14784 * 52.53208 * 30 29 16 32 32 H 1.09000 * 109.46570 * 299.99481 * 1 2 3 33 33 H 1.08999 * 109.47587 * 59.99316 * 1 2 3 34 34 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 35 35 H 0.96991 * 120.00472 * 94.99191 * 4 2 1 36 36 H 0.97005 * 119.99955 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.68184 * 68.05047 * 15 13 2 38 38 H 1.09003 * 109.68180 * 307.49920 * 15 13 2 39 39 H 1.08002 * 126.51694 * 359.97438 * 20 19 17 40 40 H 1.08996 * 109.67913 * 103.07936 * 25 22 21 41 41 H 1.09007 * 109.67489 * 223.58300 * 25 22 21 42 42 H 1.09000 * 109.46035 * 170.20022 * 26 25 22 43 43 H 1.09011 * 109.46126 * 290.17487 * 26 25 22 44 44 H 1.09004 * 109.47356 * 49.58781 * 27 26 25 45 45 H 1.09002 * 109.47401 * 169.58682 * 27 26 25 46 46 H 1.09003 * 109.67771 * 283.21109 * 28 21 20 47 47 H 1.08994 * 109.68476 * 43.76537 * 28 21 20 48 48 H 1.08997 * 109.67820 * 68.93314 * 29 16 15 49 49 H 1.08999 * 109.68628 * 189.49463 * 29 16 15 50 50 H 1.09005 * 109.65319 * 292.56900 * 30 29 16 51 51 H 1.08997 * 109.48303 * 172.40005 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1493 -0.0077 2.3757 6 1 1.8921 1.0401 2.4244 7 6 2.6115 -0.6623 3.5091 8 7 2.7368 -0.0059 4.6430 9 14 3.0557 -2.4748 3.4251 10 1 4.4885 -2.6169 3.0618 11 1 2.8156 -3.1051 4.7481 12 1 2.2161 -3.1431 2.3987 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2056 15 6 1.6348 0.0698 -2.4984 16 7 1.9695 -0.7332 -3.6851 17 6 2.6762 -0.2045 -4.7038 18 8 3.0426 0.9548 -4.6530 19 6 3.0034 -1.0266 -5.8737 20 6 4.0992 -0.8710 -6.6988 21 6 4.0160 -1.8597 -7.6759 22 6 2.8938 -2.5905 -7.4409 23 7 2.2757 -2.0977 -6.3452 24 1 1.4551 -2.4392 -5.9567 25 6 2.4557 -3.7572 -8.2940 26 6 3.2099 -3.6922 -9.6274 27 6 4.7081 -3.5242 -9.3602 28 6 4.9747 -2.1172 -8.8117 29 6 1.5047 -2.1287 -3.7296 30 6 1.9207 -2.8143 -2.4182 31 8 1.4658 -2.0289 -1.3137 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 2.2490 -1.6319 1.1524 36 1 3.0595 -0.4635 5.4352 37 1 2.1797 1.0134 -2.5281 38 1 0.5626 0.2650 -2.4776 39 1 4.8735 -0.1240 -6.6049 40 1 2.6898 -4.6922 -7.7852 41 1 1.3826 -3.6967 -8.4754 42 1 3.0414 -4.6133 -10.1852 43 1 2.8475 -2.8441 -10.2086 44 1 5.0325 -4.2661 -8.6305 45 1 5.2606 -3.6628 -10.2895 46 1 4.8170 -1.3803 -9.5993 47 1 6.0003 -2.0530 -8.4482 48 1 0.4197 -2.1511 -3.8306 49 1 1.9634 -2.6417 -4.5749 50 1 3.0065 -2.9029 -2.3792 51 1 1.4725 -3.8066 -2.3686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675622252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:14 Heat of formation + Delta-G solvation = -10.424207 kcal Electronic energy + Delta-G solvation = -31250.178206 eV Core-core repulsion = 27150.879399 eV Total energy + Delta-G solvation = -4099.298808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11572 -40.19090 -38.43967 -36.74720 -35.74115 -34.75599 -32.66752 -32.47669 -30.82970 -29.70578 -29.32359 -28.79755 -27.32006 -25.19737 -24.09586 -23.65150 -22.69834 -22.02548 -21.16537 -19.99706 -19.86344 -19.02908 -18.00365 -17.56267 -16.63280 -16.46602 -15.99271 -15.90800 -15.34835 -15.16988 -14.67547 -14.55823 -14.33561 -14.29083 -14.14334 -13.84542 -13.57352 -13.39760 -13.24971 -12.93608 -12.83232 -12.75107 -12.68183 -12.42488 -12.29226 -12.02588 -11.64190 -11.33385 -11.29332 -11.13706 -10.97452 -10.92151 -10.80407 -10.68631 -10.44987 -10.18829 -10.03449 -9.95818 -9.57286 -9.08651 -8.92809 -8.72281 -8.21840 -7.25877 -5.75139 -3.10470 1.23452 2.31864 2.54053 2.66853 3.14671 3.40226 3.45558 3.47289 3.73892 4.21146 4.22142 4.39382 4.43959 4.46702 4.59686 4.61929 4.72938 4.79235 4.87510 4.95046 5.06575 5.10152 5.12878 5.13498 5.18740 5.25913 5.42926 5.46851 5.48880 5.50307 5.52643 5.57534 5.65052 5.69423 5.71713 5.83178 5.86382 5.91395 5.93428 6.08304 6.19449 6.31895 6.45309 6.52401 6.64635 6.72358 6.99314 7.04566 7.11432 7.25274 7.90450 8.00886 8.43945 9.22991 9.95297 10.16075 11.43003 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002305 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.855467 B =12143.948894 C =12495.383448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.274 1.274 13 C 0.071 3.929 14 H 0.066 0.934 15 C 0.085 3.915 16 N -0.613 5.613 17 C 0.590 3.410 18 O -0.524 6.524 19 C -0.050 4.050 20 C -0.100 4.100 21 C -0.172 4.172 22 C 0.043 3.957 23 N -0.535 5.535 24 H 0.418 0.582 25 C -0.053 4.053 26 C -0.113 4.113 27 C -0.120 4.120 28 C -0.047 4.047 29 C 0.054 3.946 30 C 0.048 3.952 31 O -0.361 6.361 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.366 0.634 36 H 0.259 0.741 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -10.251 -31.847 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.088 0.912 4 N -0.386 5.386 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.200 1.200 13 C 0.012 3.988 14 H 0.084 0.916 15 C -0.037 4.037 16 N -0.347 5.347 17 C 0.379 3.621 18 O -0.400 6.400 19 C -0.162 4.162 20 C -0.126 4.126 21 C -0.178 4.178 22 C -0.074 4.074 23 N -0.136 5.136 24 H 0.260 0.740 25 C -0.091 4.091 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.085 4.085 29 C -0.070 4.070 30 C -0.030 4.030 31 O -0.279 6.279 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.199 0.801 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.074 0.926 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.333 -9.518 -31.367 32.806 hybrid contribution 0.006 -1.470 0.195 1.483 sum -1.327 -10.988 -31.172 33.078 Atomic orbital electron populations 1.22385 0.98153 1.01609 1.00137 1.20173 0.93011 0.94934 0.83849 0.91229 1.42702 1.79589 1.09604 1.06755 1.19076 1.36938 0.95533 0.85706 0.89120 1.24652 1.01413 0.97490 0.95528 1.69703 1.52638 1.35572 1.00224 0.86567 0.78452 0.86923 0.76825 1.21209 1.21817 1.19972 1.23061 0.97777 0.82904 0.95067 0.91588 1.22509 1.02220 0.95862 0.83159 1.48100 1.54718 1.12607 1.19242 1.17143 0.77685 0.86121 0.81133 1.90853 1.53158 1.16124 1.79854 1.20290 0.99046 0.95391 1.01496 1.20994 0.97581 0.99832 0.94179 1.19273 0.98246 0.99499 1.00750 1.20517 0.95719 0.99861 0.91309 1.42459 1.22705 1.25192 1.23286 0.73985 1.20319 1.00235 0.94032 0.94552 1.21515 0.95483 1.02395 0.95661 1.21600 0.95810 0.97255 1.01089 1.20065 0.97312 0.96510 0.94620 1.22984 1.00585 0.82650 1.00795 1.22946 0.99679 0.95052 0.85357 1.88085 1.67692 1.26074 1.46025 0.92327 0.94349 0.92591 0.80108 0.93091 0.87680 0.89810 0.83569 0.90156 0.90714 0.91110 0.91351 0.91665 0.91483 0.91185 0.90990 0.90104 0.88950 0.92589 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.06 37.16 0.34 -2.53 16 2 C 0.19 3.65 2.77 -67.93 -0.19 3.46 16 3 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 4 N -0.74 -17.79 4.91 -53.42 -0.26 -18.05 16 5 C -0.24 -6.87 10.41 -15.06 -0.16 -7.02 16 6 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 7 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 9 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.66 6.52 56.52 0.37 -6.29 16 13 C 0.07 1.15 2.61 -26.58 -0.07 1.08 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.08 1.18 5.82 -3.54 -0.02 1.16 16 16 N -0.61 -7.67 3.01 -173.56 -0.52 -8.19 16 17 C 0.59 8.29 7.64 -12.85 -0.10 8.19 16 18 O -0.52 -9.18 16.47 5.20 0.09 -9.09 16 19 C -0.05 -0.59 6.41 -81.84 -0.52 -1.11 16 20 C -0.10 -1.14 10.73 -39.27 -0.42 -1.56 16 21 C -0.17 -1.59 5.91 -104.99 -0.62 -2.21 16 22 C 0.04 0.35 7.02 -81.80 -0.57 -0.23 16 23 N -0.54 -4.50 4.76 -5.50 -0.03 -4.52 16 24 H 0.42 2.53 6.35 -40.82 -0.26 2.27 16 25 C -0.05 -0.27 6.30 -27.56 -0.17 -0.44 16 26 C -0.11 -0.51 5.89 -26.51 -0.16 -0.67 16 27 C -0.12 -0.62 5.90 -26.49 -0.16 -0.78 16 28 C -0.05 -0.33 6.28 -27.63 -0.17 -0.50 16 29 C 0.05 0.50 5.71 -3.31 -0.02 0.48 16 30 C 0.05 0.53 7.00 37.53 0.26 0.80 16 31 O -0.36 -5.58 9.24 -35.23 -0.33 -5.91 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.56 6.42 -51.93 -0.33 0.22 16 34 H 0.05 1.01 7.55 -51.93 -0.39 0.62 16 35 H 0.37 8.81 5.45 -40.82 -0.22 8.59 16 36 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 37 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 38 H 0.08 1.09 6.27 -51.93 -0.33 0.77 16 39 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.34 8.11 -51.92 -0.42 -0.08 16 44 H 0.06 0.36 8.11 -51.93 -0.42 -0.07 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.68 4.03 -51.93 -0.21 0.47 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -35.13 393.23 -9.95 -45.08 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.04 Total: 7.58 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.85 Total: -1.83 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.04 Total: -59.52 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.24 Total: -15.00 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.13 -9.95 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675622252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.659 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds