Wall clock time and date at job start Wed Apr 1 2020 04:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47719 * 2 1 4 4 N 1.46503 * 109.47396 * 120.01002 * 2 1 3 5 5 C 1.36942 * 119.99484 * 274.99399 * 4 2 1 6 6 H 1.08004 * 120.00187 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00018 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00156 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47013 * 90.00138 * 9 7 5 11 11 H 1.48500 * 109.46929 * 209.99958 * 9 7 5 12 12 H 1.48497 * 109.47170 * 330.00140 * 9 7 5 13 13 C 1.53002 * 109.46724 * 240.00384 * 2 1 3 14 14 H 1.09004 * 109.51463 * 185.10121 * 13 2 1 15 15 C 1.53293 * 109.51447 * 65.00082 * 13 2 1 16 16 N 1.47149 * 108.38751 * 187.77400 * 15 13 2 17 17 C 1.34783 * 120.98158 * 230.51453 * 16 15 13 18 18 O 1.21691 * 119.99828 * 359.69802 * 17 16 15 19 19 C 1.46680 * 119.99700 * 179.70208 * 17 16 15 20 20 C 1.38047 * 126.20053 * 208.04014 * 19 17 16 21 21 C 1.39252 * 106.97543 * 180.02562 * 20 19 17 22 22 C 1.35963 * 108.03605 * 0.04562 * 21 20 19 23 23 N 1.35113 * 108.76830 * 359.64818 * 22 21 20 24 24 H 0.96999 * 125.69130 * 180.35937 * 23 22 21 25 25 C 1.51027 * 123.84845 * 179.81808 * 22 21 20 26 26 C 1.53320 * 108.40949 * 343.34995 * 25 22 21 27 27 C 1.53103 * 109.52737 * 50.17574 * 26 25 22 28 28 C 1.50843 * 127.70347 * 180.13723 * 21 20 19 29 29 C 1.47154 * 118.03800 * 50.78479 * 16 15 13 30 30 C 1.53717 * 108.16005 * 309.16184 * 29 16 15 31 31 O 1.42956 * 109.14784 * 52.53208 * 30 29 16 32 32 H 1.09000 * 109.46570 * 299.99481 * 1 2 3 33 33 H 1.08999 * 109.47587 * 59.99316 * 1 2 3 34 34 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 35 35 H 0.96991 * 120.00472 * 94.99191 * 4 2 1 36 36 H 0.97005 * 119.99955 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.68184 * 68.05047 * 15 13 2 38 38 H 1.09003 * 109.68180 * 307.49920 * 15 13 2 39 39 H 1.08002 * 126.51694 * 359.97438 * 20 19 17 40 40 H 1.08996 * 109.67913 * 103.07936 * 25 22 21 41 41 H 1.09007 * 109.67489 * 223.58300 * 25 22 21 42 42 H 1.09000 * 109.46035 * 170.20022 * 26 25 22 43 43 H 1.09011 * 109.46126 * 290.17487 * 26 25 22 44 44 H 1.09004 * 109.47356 * 49.58781 * 27 26 25 45 45 H 1.09002 * 109.47401 * 169.58682 * 27 26 25 46 46 H 1.09003 * 109.67771 * 283.21109 * 28 21 20 47 47 H 1.08994 * 109.68476 * 43.76537 * 28 21 20 48 48 H 1.08997 * 109.67820 * 68.93314 * 29 16 15 49 49 H 1.08999 * 109.68628 * 189.49463 * 29 16 15 50 50 H 1.09005 * 109.65319 * 292.56900 * 30 29 16 51 51 H 1.08997 * 109.48303 * 172.40005 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1493 -0.0077 2.3757 6 1 1.8921 1.0401 2.4244 7 6 2.6115 -0.6623 3.5091 8 7 2.7368 -0.0059 4.6430 9 14 3.0557 -2.4748 3.4251 10 1 4.4885 -2.6169 3.0618 11 1 2.8156 -3.1051 4.7481 12 1 2.2161 -3.1431 2.3987 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2056 15 6 1.6348 0.0698 -2.4984 16 7 1.9695 -0.7332 -3.6851 17 6 2.6762 -0.2045 -4.7038 18 8 3.0426 0.9548 -4.6530 19 6 3.0034 -1.0266 -5.8737 20 6 4.0992 -0.8710 -6.6988 21 6 4.0160 -1.8597 -7.6759 22 6 2.8938 -2.5905 -7.4409 23 7 2.2757 -2.0977 -6.3452 24 1 1.4551 -2.4392 -5.9567 25 6 2.4557 -3.7572 -8.2940 26 6 3.2099 -3.6922 -9.6274 27 6 4.7081 -3.5242 -9.3602 28 6 4.9747 -2.1172 -8.8117 29 6 1.5047 -2.1287 -3.7296 30 6 1.9207 -2.8143 -2.4182 31 8 1.4658 -2.0289 -1.3137 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 2.2490 -1.6319 1.1524 36 1 3.0595 -0.4635 5.4352 37 1 2.1797 1.0134 -2.5281 38 1 0.5626 0.2650 -2.4776 39 1 4.8735 -0.1240 -6.6049 40 1 2.6898 -4.6922 -7.7852 41 1 1.3826 -3.6967 -8.4754 42 1 3.0414 -4.6133 -10.1852 43 1 2.8475 -2.8441 -10.2086 44 1 5.0325 -4.2661 -8.6305 45 1 5.2606 -3.6628 -10.2895 46 1 4.8170 -1.3803 -9.5993 47 1 6.0003 -2.0530 -8.4482 48 1 0.4197 -2.1511 -3.8306 49 1 1.9634 -2.6417 -4.5749 50 1 3.0065 -2.9029 -2.3792 51 1 1.4725 -3.8066 -2.3686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675622252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:12 Heat of formation + Delta-G solvation = -33.920945 kcal Electronic energy + Delta-G solvation = -31251.197101 eV Core-core repulsion = 27150.879399 eV Total energy + Delta-G solvation = -4100.317703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.87275 -41.22407 -39.59939 -37.43012 -37.14847 -35.89842 -34.41016 -33.21744 -32.43692 -30.52652 -30.28617 -29.86166 -28.39054 -26.52882 -25.16218 -24.78282 -23.79734 -22.72559 -22.07658 -21.35530 -20.85947 -19.82752 -19.62429 -18.70064 -17.78973 -17.36833 -17.05679 -16.84849 -16.53551 -16.26578 -16.07237 -15.69510 -15.48509 -14.95881 -14.93789 -14.69551 -14.61958 -14.50961 -14.42668 -14.32938 -13.96968 -13.90748 -13.51515 -13.38466 -13.26000 -13.13572 -12.95756 -12.64214 -12.53604 -12.42679 -12.14315 -11.89980 -11.80565 -11.68174 -11.65299 -11.53964 -11.35250 -11.34711 -11.14056 -11.00562 -9.88394 -9.75024 -9.34355 -8.93683 -8.02798 -5.35887 0.37259 1.36664 1.38969 1.47455 1.54107 1.59277 1.91695 2.25270 2.47773 2.64524 3.28454 3.30845 3.41488 3.71691 3.73705 3.78825 3.90786 3.92718 3.96827 4.08860 4.11035 4.16412 4.18974 4.36334 4.39146 4.50842 4.52695 4.56724 4.64013 4.68042 4.69957 4.72132 4.73774 4.85857 4.96069 5.01407 5.06311 5.12123 5.13446 5.20401 5.24613 5.32997 5.37139 5.54251 5.56302 5.75863 5.81344 5.87538 6.09074 6.12286 6.21889 6.42758 6.86463 7.06933 7.82724 8.03129 9.18548 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002305 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.855467 B =12143.948894 C =12495.383448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.180 3.820 3 H 0.060 0.940 4 N -0.747 5.747 5 C -0.227 4.227 6 H 0.059 0.941 7 C -0.065 4.065 8 N -0.983 5.983 9 Si 0.953 3.047 10 H -0.281 1.281 11 H -0.295 1.295 12 H -0.253 1.253 13 C 0.088 3.912 14 H 0.047 0.953 15 C 0.093 3.907 16 N -0.611 5.611 17 C 0.587 3.413 18 O -0.573 6.573 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.189 4.189 22 C 0.062 3.938 23 N -0.522 5.522 24 H 0.430 0.570 25 C -0.053 4.053 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.050 4.050 29 C 0.057 3.943 30 C 0.040 3.960 31 O -0.378 6.378 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.114 0.886 50 H 0.047 0.953 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -13.951 -35.174 37.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.391 5.391 5 C -0.358 4.358 6 H 0.077 0.923 7 C -0.256 4.256 8 N -0.634 5.634 9 Si 0.781 3.219 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.177 1.177 13 C 0.028 3.972 14 H 0.065 0.935 15 C -0.030 4.030 16 N -0.343 5.343 17 C 0.378 3.622 18 O -0.452 6.452 19 C -0.186 4.186 20 C -0.144 4.144 21 C -0.195 4.195 22 C -0.056 4.056 23 N -0.124 5.124 24 H 0.275 0.725 25 C -0.091 4.091 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.087 4.087 29 C -0.066 4.066 30 C -0.037 4.037 31 O -0.296 6.296 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.131 0.869 50 H 0.065 0.935 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.705 -13.255 -34.750 37.290 hybrid contribution 0.425 -0.286 1.100 1.213 sum -2.280 -13.541 -33.650 36.344 Atomic orbital electron populations 1.22199 0.96313 1.01733 1.00681 1.20385 0.94194 0.94612 0.83620 0.92234 1.42690 1.79974 1.09617 1.06779 1.19042 1.34999 0.94458 0.87337 0.92267 1.25468 1.02462 1.02487 0.95199 1.69881 1.54744 1.37646 1.01104 0.85427 0.78410 0.81086 0.77012 1.20781 1.22149 1.17722 1.22592 0.96436 0.83882 0.94268 0.93469 1.22287 1.02720 0.95078 0.82950 1.48141 1.54233 1.13813 1.18157 1.17484 0.77012 0.85797 0.81884 1.90818 1.55134 1.18268 1.80978 1.19887 1.00227 0.96965 1.01501 1.21142 0.97651 1.00419 0.95216 1.19578 0.99544 0.99292 1.01075 1.21103 0.94535 0.99600 0.90388 1.42365 1.22799 1.24058 1.23190 0.72472 1.20524 1.01438 0.93018 0.94113 1.21548 0.94620 1.03286 0.95571 1.21601 0.96771 0.95640 1.01507 1.20133 0.96634 0.98005 0.93946 1.23202 1.02285 0.80504 1.00584 1.23269 0.99627 0.96017 0.84767 1.88037 1.67790 1.25579 1.48222 0.94688 0.90889 0.92547 0.79962 0.93393 0.89321 0.88271 0.84883 0.88402 0.88769 0.89031 0.91817 0.91743 0.90250 0.91101 0.91367 0.87407 0.86892 0.93456 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.06 71.98 0.65 -4.47 16 2 C 0.18 6.92 2.77 44.99 0.12 7.05 16 3 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 4 N -0.75 -35.82 4.91 -322.93 -1.59 -37.40 16 5 C -0.23 -13.20 10.41 84.03 0.87 -12.33 16 6 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 8 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16 9 Si 0.95 46.81 27.74 68.60 1.90 48.71 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -11.37 6.52 99.48 0.65 -10.73 16 13 C 0.09 2.77 2.61 30.69 0.08 2.85 16 14 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 15 C 0.09 2.51 5.82 86.35 0.50 3.02 16 16 N -0.61 -14.45 3.01 -821.23 -2.48 -16.93 16 17 C 0.59 16.47 7.64 86.45 0.66 17.13 16 18 O -0.57 -20.90 16.47 -4.32 -0.07 -20.97 16 19 C -0.07 -1.67 6.41 40.37 0.26 -1.41 16 20 C -0.12 -2.70 10.73 22.47 0.24 -2.46 16 21 C -0.19 -3.27 5.91 -20.10 -0.12 -3.38 16 22 C 0.06 0.82 7.02 41.63 0.29 1.11 16 23 N -0.52 -7.32 4.76 -171.30 -0.81 -8.14 16 24 H 0.43 3.52 6.35 -92.71 -0.59 2.93 16 25 C -0.05 -0.30 6.30 30.06 0.19 -0.11 16 26 C -0.11 -0.59 5.89 30.74 0.18 -0.41 16 27 C -0.12 -0.89 5.90 30.75 0.18 -0.71 16 28 C -0.05 -0.62 6.28 30.01 0.19 -0.43 16 29 C 0.06 0.86 5.71 86.50 0.49 1.35 16 30 C 0.04 0.77 7.00 72.22 0.51 1.27 16 31 O -0.38 -10.78 9.24 -148.98 -1.38 -12.16 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.97 6.42 -2.39 -0.02 1.95 16 34 H 0.06 1.93 7.55 -2.39 -0.02 1.91 16 35 H 0.37 17.29 5.45 -92.72 -0.51 16.79 16 36 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 37 H 0.09 2.72 7.08 -2.39 -0.02 2.71 16 38 H 0.10 2.38 6.27 -2.39 -0.01 2.36 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.06 0.42 8.11 -2.38 -0.02 0.40 16 44 H 0.06 0.51 8.11 -2.38 -0.02 0.49 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.11 1.24 4.03 -2.39 -0.01 1.23 16 50 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -80.09 393.23 1.46 -78.63 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.20 Total: 27.43 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.77 Total: 4.64 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -4.57 Total: -126.27 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.45 Total: -33.13 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -80.09 1.46 -78.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675622252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.706 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds