Wall clock time and date at job start Wed Apr 1 2020 04:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 N 1.46500 * 109.46751 * 120.00219 * 2 1 3 5 5 C 1.36937 * 119.99815 * 274.99825 * 4 2 1 6 6 H 1.07998 * 120.00478 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00064 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99701 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47240 * 119.99702 * 9 7 5 12 12 H 1.48502 * 109.47394 * 239.99878 * 9 7 5 13 13 C 1.52996 * 109.46981 * 239.99933 * 2 1 3 14 14 H 1.08999 * 109.70092 * 186.75604 * 13 2 1 15 15 C 1.53622 * 109.66620 * 307.34283 * 13 2 1 16 16 C 1.53040 * 109.24444 * 174.54919 * 15 13 2 17 17 C 1.53046 * 109.53644 * 298.51497 * 16 15 13 18 18 C 1.53188 * 109.31158 * 61.36398 * 17 16 15 19 19 N 1.46922 * 108.77530 * 305.36207 * 18 17 16 20 20 C 1.34779 * 120.63018 * 233.58428 * 19 18 17 21 21 O 1.21280 * 119.99756 * 176.47700 * 20 19 18 22 22 C 1.50700 * 119.99997 * 356.48225 * 20 19 18 23 23 C 1.50697 * 109.46980 * 179.97438 * 22 20 19 24 24 C 1.35454 * 126.77908 * 89.99944 * 23 22 20 25 25 C 1.41375 * 103.98796 * 179.97438 * 24 23 22 26 26 C 1.50707 * 126.80204 * 179.97438 * 25 24 23 27 27 C 1.52996 * 117.49610 * 343.63057 * 26 25 24 28 28 C 1.52996 * 117.50067 * 275.00718 * 26 25 24 29 29 N 1.30170 * 106.39792 * 0.02562 * 25 24 23 30 30 O 1.20924 * 111.60236 * 359.72151 * 29 25 24 31 31 H 1.09001 * 109.46590 * 312.40453 * 1 2 3 32 32 H 1.09002 * 109.46763 * 72.39326 * 1 2 3 33 33 H 1.08991 * 109.47429 * 192.39632 * 1 2 3 34 34 H 0.97000 * 120.00287 * 94.99929 * 4 2 1 35 35 H 0.97008 * 119.99979 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.63279 * 54.55875 * 15 13 2 37 37 H 1.08999 * 109.43780 * 294.42298 * 15 13 2 38 38 H 1.08999 * 109.46402 * 178.49714 * 16 15 13 39 39 H 1.08999 * 109.44755 * 58.52556 * 16 15 13 40 40 H 1.08992 * 109.49698 * 301.40948 * 17 16 15 41 41 H 1.09005 * 109.52232 * 181.33001 * 17 16 15 42 42 H 1.09002 * 109.58559 * 185.57229 * 18 17 16 43 43 H 1.09003 * 109.58893 * 65.15351 * 18 17 16 44 44 H 1.09002 * 109.46909 * 299.99650 * 22 20 19 45 45 H 1.08999 * 109.47049 * 59.99883 * 22 20 19 46 46 H 1.08007 * 128.00129 * 359.97438 * 24 23 22 47 47 H 1.09003 * 115.54433 * 129.33329 * 26 25 24 48 48 H 1.09006 * 117.50260 * 359.97438 * 27 26 25 49 49 H 1.08999 * 117.49848 * 145.02020 * 27 26 25 50 50 H 1.08995 * 117.49529 * 214.97741 * 28 26 25 51 51 H 1.09003 * 117.50066 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.9251 -1.9389 3.4499 9 14 2.7912 0.2702 5.1180 10 1 2.3762 1.6823 4.9209 11 1 1.9309 -0.3582 6.1525 12 1 4.2083 0.2273 5.5599 13 6 2.0400 -0.7213 -1.2492 14 1 3.1233 -0.8292 -1.1947 15 6 1.3850 -2.1072 -1.3496 16 6 1.7954 -2.7647 -2.6692 17 6 1.3013 -1.9128 -3.8408 18 6 1.9503 -0.5271 -3.7686 19 7 1.6817 0.0526 -2.4456 20 6 1.1223 1.2736 -2.3316 21 8 0.8468 1.7144 -1.2358 22 6 0.8392 2.0909 -3.5656 23 6 0.2175 3.4043 -3.1664 24 6 0.8695 4.5572 -2.8826 25 6 -0.1663 5.4682 -2.5728 26 6 -0.0088 6.9146 -2.1797 27 6 1.3783 7.3773 -1.7297 28 6 0.2539 7.2210 -0.7039 29 7 -1.2828 4.8100 -2.6932 30 8 -1.0902 3.6638 -3.0271 31 1 -0.3632 0.6930 0.7589 32 1 -0.3633 0.3109 -0.9796 33 1 -0.3634 -1.0036 0.2206 34 1 2.2490 -1.6318 1.1526 35 1 3.2491 -2.3960 4.2418 36 1 0.3004 -2.0030 -1.3168 37 1 1.7167 -2.7264 -0.5161 38 1 1.3540 -3.7593 -2.7321 39 1 2.8815 -2.8459 -2.7119 40 1 0.2177 -1.8104 -3.7846 41 1 1.5732 -2.3933 -4.7807 42 1 1.5279 0.1150 -4.5416 43 1 3.0265 -0.6194 -3.9154 44 1 1.7709 2.2770 -4.0998 45 1 0.1519 1.5458 -4.2126 46 1 1.9342 4.7384 -2.8910 47 1 -0.6189 7.6230 -2.7401 48 1 2.1770 6.6355 -1.7175 49 1 1.6812 8.3904 -1.9940 50 1 -0.1830 8.1313 -0.2935 51 1 0.3125 6.3765 -0.0172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689902943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:54 Heat of formation + Delta-G solvation = 73.127845 kcal Electronic energy + Delta-G solvation = -31993.128105 eV Core-core repulsion = 27897.452387 eV Total energy + Delta-G solvation = -4095.675719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.92042 -41.87083 -38.51111 -38.49709 -37.07527 -34.91981 -34.20604 -33.80893 -33.60145 -31.45307 -29.69163 -29.31642 -26.61521 -25.65413 -25.52340 -24.69002 -23.83031 -22.99071 -22.12215 -21.75581 -20.63306 -19.80864 -19.18037 -18.65704 -18.21135 -17.85847 -17.00487 -16.81382 -16.51617 -16.35121 -15.81012 -15.51453 -15.32087 -15.22405 -15.05192 -14.91467 -14.75815 -14.32609 -14.20118 -14.04323 -13.59346 -13.40994 -13.10268 -13.01167 -12.97785 -12.82198 -12.59056 -12.47000 -12.41938 -12.24547 -12.06592 -12.04312 -11.92935 -11.68890 -11.56229 -11.49315 -11.37353 -11.25796 -10.98139 -10.69748 -10.47029 -9.95764 -9.42738 -8.97140 -7.95481 -5.21735 0.44374 1.19458 1.41544 1.42720 1.53034 1.67473 1.94917 2.25761 2.55415 2.68870 3.14212 3.37343 3.46822 3.56760 3.82928 3.89636 3.94836 3.99184 4.02138 4.08443 4.09418 4.11028 4.21606 4.29125 4.35590 4.38874 4.40250 4.59099 4.67307 4.69298 4.74775 4.75523 4.80484 4.89316 4.92526 5.00267 5.03463 5.06187 5.09568 5.12237 5.17681 5.18599 5.22382 5.30374 5.43434 5.49041 5.49463 5.61615 5.80630 6.28771 6.54538 7.28355 7.29469 7.34310 8.12461 8.37463 9.28321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.003936 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.901662 B = 7112.191812 C =10128.266971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.175 3.825 3 H 0.059 0.941 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.057 0.943 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.155 3.845 14 H 0.064 0.936 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.097 3.903 19 N -0.597 5.597 20 C 0.493 3.507 21 O -0.553 6.553 22 C -0.050 4.050 23 C -0.009 4.009 24 C -0.221 4.221 25 C 0.038 3.962 26 C -0.101 4.101 27 C -0.140 4.140 28 C -0.176 4.176 29 N -0.396 5.396 30 O 0.086 5.914 31 H 0.004 0.996 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.169 0.831 45 H 0.151 0.849 46 H 0.190 0.810 47 H 0.133 0.867 48 H 0.098 0.902 49 H 0.131 0.869 50 H 0.120 0.880 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 9.590 -25.814 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 H 0.077 0.923 4 N -0.380 5.380 5 C -0.362 4.362 6 H 0.075 0.925 7 C -0.265 4.265 8 N -0.618 5.618 9 Si 0.796 3.204 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.051 3.949 14 H 0.082 0.918 15 C -0.165 4.165 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.023 4.023 19 N -0.331 5.331 20 C 0.282 3.718 21 O -0.432 6.432 22 C -0.090 4.090 23 C -0.073 4.073 24 C -0.242 4.242 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.178 4.178 28 C -0.214 4.214 29 N -0.101 5.101 30 O 0.021 5.979 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.204 0.796 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.105 0.895 44 H 0.186 0.814 45 H 0.169 0.831 46 H 0.208 0.792 47 H 0.151 0.849 48 H 0.117 0.883 49 H 0.149 0.851 50 H 0.139 0.861 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.313 10.286 -25.001 27.134 hybrid contribution 0.668 -0.254 1.861 1.993 sum -1.646 10.032 -23.141 25.275 Atomic orbital electron populations 1.22224 0.98555 0.96919 0.99360 1.20934 0.92380 0.95030 0.84887 0.92347 1.42772 1.78447 1.10265 1.06535 1.19473 1.34462 0.93545 0.88749 0.92455 1.25418 1.03170 0.96945 1.00925 1.69802 1.52922 1.09861 1.29250 0.85174 0.77165 0.77823 0.80264 1.20153 1.21871 1.21311 1.21367 0.97943 0.91375 0.84240 0.91847 1.21988 1.00487 0.94932 0.99045 1.21532 1.01471 0.99179 0.93234 1.21921 1.00789 0.94961 0.99033 1.22223 1.02224 0.95608 0.82277 1.48131 1.60885 1.16214 1.07848 1.20918 0.77666 0.82149 0.91038 1.90917 1.51702 1.71648 1.28884 1.20415 1.04869 0.87552 0.96159 1.24145 0.83154 0.98426 1.01579 1.22606 1.02265 0.91822 1.07547 1.23108 0.88801 0.98258 1.01794 1.20261 1.03635 0.88700 0.99339 1.23139 0.90126 1.04105 1.00395 1.23054 1.04050 1.03512 0.90781 1.73765 1.25311 0.92078 1.18984 1.84755 1.26592 1.22801 1.63711 0.97697 0.91980 0.96138 0.79629 0.94003 0.92260 0.93303 0.91114 0.91422 0.91763 0.87502 0.85715 0.89537 0.81403 0.83130 0.79235 0.84900 0.88328 0.85075 0.86145 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 7.04 71.98 0.51 -4.46 16 2 C 0.17 7.85 2.14 44.99 0.10 7.95 16 3 H 0.06 2.96 5.80 -11.40 -0.07 2.89 16 4 N -0.74 -40.26 5.07 -322.94 -1.64 -41.89 16 5 C -0.23 -13.97 9.93 84.03 0.83 -13.14 16 6 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 7 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 8 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 9 Si 0.97 49.21 29.55 68.60 2.03 51.24 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 C 0.16 5.12 2.81 45.12 0.13 5.24 16 14 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.13 -3.78 4.85 30.82 0.15 -3.63 16 16 C -0.12 -2.27 5.88 30.62 0.18 -2.09 16 17 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 18 C 0.10 1.10 6.33 86.36 0.55 1.65 16 19 N -0.60 -13.70 2.88 -794.24 -2.29 -15.99 16 20 C 0.49 12.56 6.51 87.66 0.57 13.13 16 21 O -0.55 -20.83 9.52 -3.03 -0.03 -20.86 16 22 C -0.05 -0.71 4.64 29.10 0.14 -0.57 16 23 C -0.01 -0.20 5.98 25.04 0.15 -0.05 16 24 C -0.22 -5.00 10.40 22.40 0.23 -4.77 16 25 C 0.04 1.01 6.95 43.58 0.30 1.31 16 26 C -0.10 -2.05 6.33 -11.54 -0.07 -2.12 16 27 C -0.14 -2.17 10.04 30.59 0.31 -1.87 16 28 C -0.18 -3.55 10.23 30.59 0.31 -3.23 16 29 N -0.40 -12.26 12.07 -49.57 -0.60 -12.85 16 30 O 0.09 2.48 11.20 71.62 0.80 3.28 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.06 2.47 5.35 -2.39 -0.01 2.45 16 33 H 0.02 0.90 7.01 -2.39 -0.02 0.89 16 34 H 0.37 20.94 6.63 -92.71 -0.61 20.32 16 35 H 0.25 15.28 8.31 -92.70 -0.77 14.50 16 36 H 0.06 1.88 6.33 -2.38 -0.02 1.87 16 37 H 0.05 1.76 7.09 -2.39 -0.02 1.74 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.12 0.40 5.95 -2.39 -0.01 0.38 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.17 0.92 8.07 -2.39 -0.02 0.90 16 45 H 0.15 1.10 7.54 -2.39 -0.02 1.08 16 46 H 0.19 3.23 7.63 -2.91 -0.02 3.20 16 47 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.10 1.57 7.35 -2.38 -0.02 1.55 16 49 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -84.51 396.78 3.87 -80.64 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.28 Total: 29.28 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.03 Total: -11.98 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -4.24 Total: -131.59 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.77 Total: -17.58 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Total: -84.51 3.87 -80.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689902943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.764 kcal (2) G-P(sol) polarization free energy of solvation -84.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds