Wall clock time and date at job start Wed Apr 1 2020 04:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 N 1.46505 * 109.47248 * 120.00551 * 2 1 3 5 5 C 1.34775 * 119.99704 * 274.99997 * 4 2 1 6 6 O 1.21285 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00135 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47525 * 179.97438 * 7 5 4 9 9 C 1.35452 * 126.77520 * 89.70784 * 8 7 5 10 10 C 1.41380 * 103.98076 * 179.91335 * 9 8 7 11 11 C 1.50703 * 126.79967 * 180.09433 * 10 9 8 12 12 C 1.53003 * 117.49776 * 343.91181 * 11 10 9 13 13 C 1.52999 * 59.99976 * 252.51302 * 12 11 10 14 14 N 1.30171 * 106.39878 * 0.35698 * 10 9 8 15 15 O 1.20921 * 111.60398 * 359.77128 * 14 10 9 16 16 C 1.53004 * 109.46978 * 240.00118 * 2 1 3 17 17 H 1.09002 * 109.52033 * 300.08210 * 16 2 1 18 18 C 1.53039 * 109.49544 * 60.15998 * 16 2 1 19 19 C 1.53043 * 109.53660 * 181.31653 * 18 16 2 20 20 C 1.53627 * 109.24132 * 298.50983 * 19 18 16 21 21 N 1.46929 * 108.54019 * 54.85844 * 20 19 18 22 22 C 1.36941 * 120.63009 * 126.36287 * 21 20 19 23 23 H 1.08000 * 120.00035 * 207.21613 * 22 21 20 24 24 C 1.38812 * 119.99547 * 27.22220 * 22 21 20 25 25 N 1.31617 * 120.00435 * 18.19652 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 197.91891 * 24 22 21 27 27 H 1.48498 * 109.47188 * 84.85121 * 26 24 22 28 28 H 1.48499 * 109.47180 * 204.85412 * 26 24 22 29 29 H 1.48506 * 109.47075 * 324.85265 * 26 24 22 30 30 C 1.46924 * 118.73893 * 306.09348 * 21 20 19 31 31 H 1.09000 * 109.47180 * 59.99525 * 1 2 3 32 32 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46772 * 299.99894 * 1 2 3 34 34 H 0.97000 * 120.00024 * 94.99449 * 4 2 1 35 35 H 1.09005 * 109.47070 * 299.99634 * 7 5 4 36 36 H 1.08999 * 109.47133 * 59.99365 * 7 5 4 37 37 H 1.08000 * 128.00582 * 0.02562 * 9 8 7 38 38 H 1.09000 * 115.55293 * 129.61501 * 11 10 9 39 39 H 1.09001 * 117.49735 * 359.97438 * 12 11 10 40 40 H 1.08996 * 117.49814 * 145.01947 * 12 11 10 41 41 H 1.09009 * 117.49694 * 252.51088 * 13 12 11 42 42 H 1.09000 * 117.50273 * 107.49057 * 13 12 11 43 43 H 1.08995 * 109.46479 * 301.33489 * 18 16 2 44 44 H 1.08999 * 109.46099 * 61.29892 * 18 16 2 45 45 H 1.08997 * 109.50083 * 58.58630 * 19 18 16 46 46 H 1.08998 * 109.49995 * 178.65766 * 19 18 16 47 47 H 1.08992 * 109.74694 * 295.12179 * 20 19 18 48 48 H 1.09006 * 109.66462 * 174.54498 * 20 19 18 49 49 H 0.97001 * 120.00020 * 179.72213 * 25 24 22 50 50 H 1.09002 * 109.58707 * 173.64848 * 30 21 20 51 51 H 1.08996 * 109.58217 * 294.07231 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7287 3.5874 8 6 2.7012 0.2397 4.7409 9 6 1.7079 0.5027 5.6236 10 6 2.2682 1.4690 6.4903 11 6 1.5957 2.1207 7.6711 12 6 0.0728 2.0093 7.7668 13 6 0.7205 3.3455 7.3981 14 7 3.4781 1.6884 6.0630 15 8 3.7365 1.0150 5.0925 16 6 2.0400 -0.7212 -1.2493 17 1 1.6759 -1.7487 -1.2509 18 6 1.5334 0.0021 -2.4992 19 6 2.0158 -0.7374 -3.7493 20 6 3.5517 -0.7342 -3.7784 21 7 4.0441 -1.3004 -2.5151 22 6 4.9306 -2.3442 -2.5170 23 1 4.9593 -3.0298 -1.6830 24 6 5.7925 -2.5208 -3.5907 25 7 6.0220 -1.5256 -4.4210 26 14 6.6325 -4.1685 -3.8528 27 1 5.7278 -5.0705 -4.6099 28 1 7.8875 -3.9677 -4.6208 29 1 6.9500 -4.7773 -2.5360 30 6 3.5719 -0.7216 -1.2500 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6319 1.1525 35 1 1.9778 -1.5510 3.8324 36 1 3.6493 -1.1205 3.3977 37 1 0.7180 0.0724 5.6583 38 1 2.1614 2.1038 8.6026 39 1 -0.4427 1.4651 6.9755 40 1 -0.3637 1.9190 8.7614 41 1 0.7100 4.1344 8.1503 42 1 0.6311 3.6801 6.3645 43 1 0.4438 0.0253 -2.4889 44 1 1.9181 1.0219 -2.5095 45 1 1.6520 -1.7646 -3.7274 46 1 1.6348 -0.2354 -4.6386 47 1 3.9159 0.2873 -3.8873 48 1 3.9041 -1.3410 -4.6126 49 1 6.6274 -1.6479 -5.1690 50 1 3.9375 -1.3199 -0.4154 51 1 3.9376 0.3009 -1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690499709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:37 Heat of formation + Delta-G solvation = 59.770553 kcal Electronic energy + Delta-G solvation = -30573.895218 eV Core-core repulsion = 26477.640284 eV Total energy + Delta-G solvation = -4096.254934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.04832 -39.97734 -37.99092 -37.86422 -35.32831 -33.86775 -33.18173 -32.95362 -31.13658 -30.48634 -28.77158 -28.21204 -25.23714 -24.86549 -23.69833 -23.06051 -22.31274 -21.97992 -21.12654 -20.41889 -19.86750 -19.11846 -17.89757 -17.48061 -16.88887 -16.63645 -16.20372 -15.75614 -15.47179 -14.87121 -14.84640 -14.37624 -14.28959 -13.86553 -13.69344 -13.55675 -13.34111 -13.20841 -12.85447 -12.48794 -12.42547 -12.35451 -12.18140 -11.92313 -11.82493 -11.73482 -11.54804 -11.32716 -11.14206 -10.98957 -10.73954 -10.69964 -10.44356 -10.25189 -10.18058 -10.09080 -9.94457 -9.91224 -9.63405 -9.47587 -9.39335 -8.98185 -8.48183 -6.70085 -5.80948 -3.22953 1.28620 2.00897 2.55076 2.81039 3.28693 3.33330 3.35518 3.42066 3.43433 3.82937 4.19767 4.45204 4.45560 4.54466 4.66857 4.75545 4.80408 4.94571 4.97858 5.00798 5.21405 5.23175 5.28971 5.34291 5.38357 5.45645 5.48997 5.52254 5.56787 5.68556 5.73137 5.73831 5.77296 5.83854 5.99172 6.04067 6.08267 6.26736 6.31807 6.39852 6.50626 6.59135 6.68187 6.77729 6.84322 6.95711 7.37852 7.48752 7.65356 7.76398 8.14292 8.17524 8.42146 9.18555 9.82562 10.39265 11.27286 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.002182 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.897338 B =12828.558305 C =13969.274471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.086 0.914 4 N -0.715 5.715 5 C 0.516 3.484 6 O -0.535 6.535 7 C -0.066 4.066 8 C -0.003 4.003 9 C -0.216 4.216 10 C 0.046 3.954 11 C -0.086 4.086 12 C -0.163 4.163 13 C -0.164 4.164 14 N -0.358 5.358 15 O 0.109 5.891 16 C -0.110 4.110 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.168 3.832 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.155 3.845 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.403 0.597 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.169 0.831 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.017 0.983 48 H 0.086 0.914 49 H 0.254 0.746 50 H 0.051 0.949 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 2.019 19.059 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.104 0.896 4 N -0.366 5.366 5 C 0.301 3.699 6 O -0.411 6.411 7 C -0.107 4.107 8 C -0.067 4.067 9 C -0.238 4.238 10 C -0.112 4.112 11 C -0.105 4.105 12 C -0.200 4.200 13 C -0.201 4.201 14 N -0.060 5.060 15 O 0.041 5.959 16 C -0.131 4.131 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.028 3.972 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.186 0.814 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.173 3.675 19.348 23.694 hybrid contribution -0.097 -1.706 -0.378 1.750 sum -13.270 1.970 18.970 23.234 Atomic orbital electron populations 1.22195 0.95680 1.01855 1.02178 1.21078 0.93444 0.97595 0.83544 0.89579 1.46035 1.66858 1.14297 1.09433 1.20154 0.78114 0.87370 0.84279 1.90750 1.49757 1.15725 1.84887 1.20170 1.06171 0.95710 0.88621 1.23543 0.88205 0.96683 0.98241 1.22216 1.01516 1.02654 0.97408 1.22556 0.91357 0.98452 0.98882 1.20083 0.92673 1.02487 0.95260 1.23022 0.92966 1.00536 1.03520 1.23036 1.02327 0.91363 1.03423 1.73808 1.17858 1.13772 1.00559 1.84844 1.36652 1.40045 1.34359 1.21971 0.99587 0.99167 0.92390 0.90979 1.21446 0.98725 0.99059 0.94718 1.22244 1.00850 0.99311 0.95698 1.20895 0.87440 0.97172 0.90220 1.44068 1.50050 1.37754 0.99495 1.19146 1.11610 1.02085 1.05456 0.91711 1.25030 0.97266 0.97445 0.99944 1.70042 1.37713 1.29125 1.17620 0.86324 0.78641 0.83954 0.77909 1.21429 1.21780 1.20520 1.20861 0.89848 0.96392 0.90070 0.91274 0.92637 0.92740 0.76236 0.85504 0.85926 0.81394 0.86023 0.88222 0.87838 0.87917 0.88326 0.93147 0.92608 0.92756 0.93281 0.96464 0.89553 0.93596 0.93047 0.96567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.14 37.16 0.34 -1.52 16 2 C 0.15 1.96 2.16 -67.92 -0.15 1.82 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -8.09 4.48 -53.80 -0.24 -8.33 16 5 C 0.52 6.25 7.79 -10.99 -0.09 6.16 16 6 O -0.53 -8.81 15.70 5.55 0.09 -8.72 16 7 C -0.07 -0.55 6.27 -29.04 -0.18 -0.74 16 8 C 0.00 -0.03 5.98 -35.30 -0.21 -0.24 16 9 C -0.22 -2.28 10.40 -39.38 -0.41 -2.69 16 10 C 0.05 0.54 6.95 -82.10 -0.57 -0.03 16 11 C -0.09 -0.78 6.33 -91.77 -0.58 -1.36 16 12 C -0.16 -1.09 10.04 -26.73 -0.27 -1.36 16 13 C -0.16 -1.30 10.23 -26.73 -0.27 -1.57 16 14 N -0.36 -5.11 12.07 33.42 0.40 -4.71 16 15 O 0.11 1.52 11.20 17.18 0.19 1.71 16 16 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.10 -1.59 4.85 -26.69 -0.13 -1.72 16 19 C -0.14 -2.59 6.10 -26.38 -0.16 -2.75 16 20 C 0.17 3.92 5.35 -3.48 -0.02 3.90 16 21 N -0.59 -14.21 2.99 -172.06 -0.51 -14.73 16 22 C -0.25 -6.70 9.59 -15.06 -0.14 -6.84 16 23 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 24 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 25 N -0.90 -25.83 11.21 55.49 0.62 -25.20 16 26 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.16 3.04 5.55 -3.71 -0.02 3.02 16 31 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 3.69 8.42 -40.82 -0.34 3.34 16 35 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.17 1.31 7.62 -52.49 -0.40 0.91 16 38 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.65 7.34 -51.93 -0.38 0.27 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.26 6.03 -51.93 -0.31 1.95 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 51 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -33.43 409.51 -9.78 -43.21 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.35 Total: 2.25 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.13 Total: -7.82 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.27 Total: -52.97 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.28 Total: -7.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.43 -9.78 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690499709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.981 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds