Wall clock time and date at job start Wed Apr 1 2020 04:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 N 1.46505 * 109.47248 * 120.00551 * 2 1 3 5 5 C 1.34775 * 119.99704 * 274.99997 * 4 2 1 6 6 O 1.21285 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00135 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47525 * 179.97438 * 7 5 4 9 9 C 1.35452 * 126.77520 * 89.70784 * 8 7 5 10 10 C 1.41380 * 103.98076 * 179.91335 * 9 8 7 11 11 C 1.50703 * 126.79967 * 180.09433 * 10 9 8 12 12 C 1.53003 * 117.49776 * 343.91181 * 11 10 9 13 13 C 1.52999 * 59.99976 * 252.51302 * 12 11 10 14 14 N 1.30171 * 106.39878 * 0.35698 * 10 9 8 15 15 O 1.20921 * 111.60398 * 359.77128 * 14 10 9 16 16 C 1.53004 * 109.46978 * 240.00118 * 2 1 3 17 17 H 1.09002 * 109.52033 * 300.08210 * 16 2 1 18 18 C 1.53039 * 109.49544 * 60.15998 * 16 2 1 19 19 C 1.53043 * 109.53660 * 181.31653 * 18 16 2 20 20 C 1.53627 * 109.24132 * 298.50983 * 19 18 16 21 21 N 1.46929 * 108.54019 * 54.85844 * 20 19 18 22 22 C 1.36941 * 120.63009 * 126.36287 * 21 20 19 23 23 H 1.08000 * 120.00035 * 207.21613 * 22 21 20 24 24 C 1.38812 * 119.99547 * 27.22220 * 22 21 20 25 25 N 1.31617 * 120.00435 * 18.19652 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 197.91891 * 24 22 21 27 27 H 1.48498 * 109.47188 * 84.85121 * 26 24 22 28 28 H 1.48499 * 109.47180 * 204.85412 * 26 24 22 29 29 H 1.48506 * 109.47075 * 324.85265 * 26 24 22 30 30 C 1.46924 * 118.73893 * 306.09348 * 21 20 19 31 31 H 1.09000 * 109.47180 * 59.99525 * 1 2 3 32 32 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46772 * 299.99894 * 1 2 3 34 34 H 0.97000 * 120.00024 * 94.99449 * 4 2 1 35 35 H 1.09005 * 109.47070 * 299.99634 * 7 5 4 36 36 H 1.08999 * 109.47133 * 59.99365 * 7 5 4 37 37 H 1.08000 * 128.00582 * 0.02562 * 9 8 7 38 38 H 1.09000 * 115.55293 * 129.61501 * 11 10 9 39 39 H 1.09001 * 117.49735 * 359.97438 * 12 11 10 40 40 H 1.08996 * 117.49814 * 145.01947 * 12 11 10 41 41 H 1.09009 * 117.49694 * 252.51088 * 13 12 11 42 42 H 1.09000 * 117.50273 * 107.49057 * 13 12 11 43 43 H 1.08995 * 109.46479 * 301.33489 * 18 16 2 44 44 H 1.08999 * 109.46099 * 61.29892 * 18 16 2 45 45 H 1.08997 * 109.50083 * 58.58630 * 19 18 16 46 46 H 1.08998 * 109.49995 * 178.65766 * 19 18 16 47 47 H 1.08992 * 109.74694 * 295.12179 * 20 19 18 48 48 H 1.09006 * 109.66462 * 174.54498 * 20 19 18 49 49 H 0.97001 * 120.00020 * 179.72213 * 25 24 22 50 50 H 1.09002 * 109.58707 * 173.64848 * 30 21 20 51 51 H 1.08996 * 109.58217 * 294.07231 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7287 3.5874 8 6 2.7012 0.2397 4.7409 9 6 1.7079 0.5027 5.6236 10 6 2.2682 1.4690 6.4903 11 6 1.5957 2.1207 7.6711 12 6 0.0728 2.0093 7.7668 13 6 0.7205 3.3455 7.3981 14 7 3.4781 1.6884 6.0630 15 8 3.7365 1.0150 5.0925 16 6 2.0400 -0.7212 -1.2493 17 1 1.6759 -1.7487 -1.2509 18 6 1.5334 0.0021 -2.4992 19 6 2.0158 -0.7374 -3.7493 20 6 3.5517 -0.7342 -3.7784 21 7 4.0441 -1.3004 -2.5151 22 6 4.9306 -2.3442 -2.5170 23 1 4.9593 -3.0298 -1.6830 24 6 5.7925 -2.5208 -3.5907 25 7 6.0220 -1.5256 -4.4210 26 14 6.6325 -4.1685 -3.8528 27 1 5.7278 -5.0705 -4.6099 28 1 7.8875 -3.9677 -4.6208 29 1 6.9500 -4.7773 -2.5360 30 6 3.5719 -0.7216 -1.2500 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6319 1.1525 35 1 1.9778 -1.5510 3.8324 36 1 3.6493 -1.1205 3.3977 37 1 0.7180 0.0724 5.6583 38 1 2.1614 2.1038 8.6026 39 1 -0.4427 1.4651 6.9755 40 1 -0.3637 1.9190 8.7614 41 1 0.7100 4.1344 8.1503 42 1 0.6311 3.6801 6.3645 43 1 0.4438 0.0253 -2.4889 44 1 1.9181 1.0219 -2.5095 45 1 1.6520 -1.7646 -3.7274 46 1 1.6348 -0.2354 -4.6386 47 1 3.9159 0.2873 -3.8873 48 1 3.9041 -1.3410 -4.6126 49 1 6.6274 -1.6479 -5.1690 50 1 3.9375 -1.3199 -0.4154 51 1 3.9376 0.3009 -1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690499709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:36 Heat of formation + Delta-G solvation = 39.875021 kcal Electronic energy + Delta-G solvation = -30574.757953 eV Core-core repulsion = 26477.640284 eV Total energy + Delta-G solvation = -4097.117669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.93963 -41.03146 -39.40556 -38.50486 -36.72090 -34.73780 -34.62235 -33.93355 -32.58759 -32.10304 -30.05255 -29.14444 -27.09143 -25.63706 -24.96752 -23.85150 -23.58662 -22.99517 -22.38559 -21.50735 -20.88912 -20.40593 -18.85100 -18.67239 -18.29342 -17.75040 -17.10798 -16.81904 -16.58139 -16.34553 -15.87655 -15.54278 -15.40422 -15.05855 -14.95112 -14.79726 -14.62562 -14.38007 -14.04406 -13.99051 -13.74608 -13.33218 -13.11269 -13.00145 -12.97663 -12.74478 -12.59222 -12.51132 -12.41781 -12.26522 -12.17837 -12.04681 -11.93698 -11.75356 -11.48904 -11.37642 -11.27886 -11.11110 -10.96187 -10.69446 -10.51227 -10.33433 -10.03279 -8.66917 -7.84850 -5.29883 0.41635 1.18777 1.48927 1.50260 1.58314 1.63097 2.00449 2.40231 2.52903 2.70221 3.12956 3.29369 3.46000 3.57516 3.80709 3.83477 3.96078 3.99414 4.04790 4.07806 4.08814 4.12023 4.29495 4.36765 4.39241 4.48237 4.53298 4.62613 4.68247 4.68927 4.75804 4.79883 4.88915 4.91298 4.93073 4.98455 5.06725 5.07855 5.09945 5.14191 5.19689 5.27511 5.29242 5.37248 5.49438 5.55776 5.62424 5.69594 5.79807 6.40331 6.58977 7.16371 7.26251 7.27526 7.88453 8.40663 9.21396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.002182 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.897338 B =12828.558305 C =13969.274471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.057 0.943 4 N -0.707 5.707 5 C 0.515 3.485 6 O -0.584 6.584 7 C -0.057 4.057 8 C -0.013 4.013 9 C -0.216 4.216 10 C 0.040 3.960 11 C -0.108 4.108 12 C -0.139 4.139 13 C -0.171 4.171 14 N -0.397 5.397 15 O 0.079 5.921 16 C -0.092 4.092 17 H 0.085 0.915 18 C -0.099 4.099 19 C -0.129 4.129 20 C 0.171 3.829 21 N -0.609 5.609 22 C -0.257 4.257 23 H 0.075 0.925 24 C -0.057 4.057 25 N -0.939 5.939 26 Si 0.967 3.033 27 H -0.283 1.283 28 H -0.301 1.301 29 H -0.265 1.265 30 C 0.153 3.847 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.417 0.583 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.197 0.803 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.066 0.934 47 H -0.014 1.014 48 H 0.052 0.948 49 H 0.248 0.752 50 H 0.060 0.940 51 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 -0.121 20.845 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.076 0.924 4 N -0.359 5.359 5 C 0.302 3.698 6 O -0.464 6.464 7 C -0.097 4.097 8 C -0.077 4.077 9 C -0.237 4.237 10 C -0.118 4.118 11 C -0.126 4.126 12 C -0.176 4.176 13 C -0.208 4.208 14 N -0.104 5.104 15 O 0.015 5.985 16 C -0.113 4.113 17 H 0.103 0.897 18 C -0.137 4.137 19 C -0.168 4.168 20 C 0.046 3.954 21 N -0.332 5.332 22 C -0.387 4.387 23 H 0.092 0.908 24 C -0.252 4.252 25 N -0.585 5.585 26 Si 0.795 3.205 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.190 1.190 30 C 0.028 3.972 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.191 0.809 36 H 0.159 0.841 37 H 0.214 0.786 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.079 0.921 51 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -15.980 1.487 21.140 26.542 hybrid contribution 0.781 -0.965 -0.908 1.538 sum -15.199 0.522 20.232 25.310 Atomic orbital electron populations 1.22110 0.93544 1.03093 1.02236 1.20830 0.94911 0.95889 0.83300 0.92424 1.45938 1.66404 1.14861 1.08705 1.20736 0.77047 0.86811 0.85184 1.90739 1.51959 1.17987 1.85688 1.20346 1.08171 0.95497 0.85708 1.24149 0.87838 0.96612 0.99052 1.22628 1.02408 1.02051 0.96634 1.23167 0.90883 0.98280 0.99440 1.20268 0.94183 1.03597 0.94601 1.23157 0.90913 0.98649 1.04918 1.23080 1.02596 0.92283 1.02886 1.73795 1.19654 1.15288 1.01656 1.84782 1.38024 1.40899 1.34762 1.21736 0.95913 1.00159 0.93476 0.89687 1.21452 1.00880 0.97982 0.93399 1.22064 0.96493 1.00272 0.97989 1.20733 0.91055 0.94494 0.89164 1.44358 1.50074 1.37695 1.01028 1.19566 1.11199 1.02583 1.05355 0.90767 1.25827 0.98608 1.00515 1.00203 1.70216 1.38913 1.31123 1.18270 0.85286 0.77042 0.80061 0.78074 1.21018 1.22852 1.19000 1.20997 0.92952 0.94723 0.88543 0.90661 0.90695 0.93312 0.74601 0.80946 0.84077 0.78571 0.85357 0.87838 0.85340 0.86237 0.90291 0.89442 0.93667 0.92326 0.91550 0.99545 0.92992 0.94325 0.92108 0.99072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.14 71.98 0.66 -2.36 16 2 C 0.16 3.85 2.16 44.99 0.10 3.95 16 3 H 0.06 1.79 7.58 -2.39 -0.02 1.78 16 4 N -0.71 -14.33 4.48 -442.53 -1.98 -16.31 16 5 C 0.52 11.63 7.79 87.66 0.68 12.31 16 6 O -0.58 -19.11 15.70 -3.05 -0.05 -19.16 16 7 C -0.06 -0.81 6.27 29.10 0.18 -0.63 16 8 C -0.01 -0.27 5.98 25.04 0.15 -0.12 16 9 C -0.22 -4.24 10.40 22.40 0.23 -4.00 16 10 C 0.04 0.95 6.95 43.58 0.30 1.26 16 11 C -0.11 -1.84 6.33 -11.54 -0.07 -1.91 16 12 C -0.14 -1.52 10.04 30.60 0.31 -1.21 16 13 C -0.17 -2.55 10.23 30.59 0.31 -2.23 16 14 N -0.40 -11.74 12.07 -49.56 -0.60 -12.34 16 15 O 0.08 2.26 11.20 71.66 0.80 3.06 16 16 C -0.09 -2.65 1.97 -10.72 -0.02 -2.68 16 17 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.10 -2.91 4.85 30.62 0.15 -2.77 16 19 C -0.13 -4.55 6.10 30.82 0.19 -4.37 16 20 C 0.17 8.19 5.35 86.51 0.46 8.65 16 21 N -0.61 -29.52 2.99 -698.26 -2.09 -31.61 16 22 C -0.26 -13.58 9.59 84.03 0.81 -12.78 16 23 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 24 C -0.06 -3.11 4.89 84.86 0.42 -2.70 16 25 N -0.94 -55.78 11.21 21.65 0.24 -55.54 16 26 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 30 C 0.15 5.97 5.55 86.36 0.48 6.45 16 31 H 0.07 1.41 6.41 -2.39 -0.02 1.39 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.42 6.21 8.42 -92.71 -0.78 5.43 16 35 H 0.17 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.20 2.47 7.62 -2.91 -0.02 2.45 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 1.06 7.34 -2.39 -0.02 1.04 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 2.00 6.36 -2.39 -0.02 1.98 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 48 H 0.05 2.83 6.03 -2.38 -0.01 2.81 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 51 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: -1.00 -77.73 409.51 3.85 -73.89 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.15 Total: 17.17 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.33 Total: -5.15 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -4.42 Total: -115.79 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.75 Total: -16.10 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.73 3.85 -73.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690499709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.763 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds