Wall clock time and date at job start Wed Apr 1 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46827 * 2 1 4 4 C 1.50700 * 109.46896 * 119.99849 * 2 1 3 5 5 C 1.38359 * 119.40955 * 274.99815 * 4 2 1 6 6 C 1.38333 * 119.45897 * 180.02562 * 5 4 2 7 7 C 1.39983 * 118.34869 * 359.97438 * 6 5 4 8 8 C 1.47532 * 120.59488 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99702 * 134.08982 * 8 7 6 10 10 N 1.34777 * 119.99680 * 314.08692 * 8 7 6 11 11 C 1.47015 * 125.65270 * 4.89022 * 10 8 7 12 12 C 1.54327 * 107.40501 * 181.10103 * 11 10 8 13 13 C 1.55156 * 102.94060 * 22.11116 * 12 11 10 14 14 H 1.08997 * 111.00461 * 82.57473 * 13 12 11 15 15 C 1.52996 * 111.00423 * 206.42861 * 13 12 11 16 16 H 1.09001 * 109.47462 * 55.90125 * 15 13 12 17 17 C 1.53001 * 109.47287 * 175.90288 * 15 13 12 18 18 N 1.46500 * 109.47059 * 295.89935 * 15 13 12 19 19 C 1.36946 * 119.99908 * 154.99696 * 18 15 13 20 20 H 1.08000 * 120.00159 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99826 * 179.97438 * 19 18 15 22 22 N 1.31621 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00047 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47164 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47355 * 120.00538 * 23 21 19 26 26 H 1.48502 * 109.47196 * 240.00713 * 23 21 19 27 27 C 1.47746 * 125.81730 * 184.78993 * 10 8 7 28 28 C 1.40274 * 118.80989 * 0.28112 * 7 6 5 29 29 O 1.35428 * 119.80428 * 179.70139 * 28 7 6 30 30 N 1.31882 * 119.40739 * 94.98117 * 4 2 1 31 31 H 1.08993 * 109.47017 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47079 * 60.00062 * 1 2 3 33 33 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47017 * 240.00031 * 2 1 3 35 35 H 1.08993 * 109.47296 * 60.00202 * 3 2 1 36 36 H 1.08999 * 109.46787 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.47042 * 299.99382 * 3 2 1 38 38 H 1.07998 * 120.26881 * 0.02696 * 5 4 2 39 39 H 1.08000 * 120.82328 * 179.97438 * 6 5 4 40 40 H 1.08992 * 109.88761 * 61.60399 * 11 10 8 41 41 H 1.09008 * 109.88091 * 300.58864 * 11 10 8 42 42 H 1.08997 * 110.72234 * 140.47604 * 12 11 10 43 43 H 1.09005 * 110.71532 * 263.75394 * 12 11 10 44 44 H 1.08999 * 109.46883 * 54.86581 * 17 15 13 45 45 H 1.08999 * 109.47181 * 174.86331 * 17 15 13 46 46 H 1.08997 * 109.47280 * 294.86376 * 17 15 13 47 47 H 0.97003 * 120.00271 * 335.00376 * 18 15 13 48 48 H 0.96996 * 120.00354 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.29478 * 37.02998 * 27 10 8 50 50 H 1.09002 * 110.52944 * 274.75552 * 27 10 8 51 51 H 0.96702 * 114.00301 * 89.99616 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1598 -0.0083 2.4159 6 6 2.6213 -0.6592 3.5459 7 6 2.9443 -2.0176 3.4452 8 6 3.4403 -2.7605 4.6194 9 8 2.9850 -3.8569 4.8817 10 7 4.3980 -2.2237 5.4011 11 6 4.9615 -0.8731 5.2607 12 6 6.0411 -0.7077 6.3510 13 6 6.4219 -2.1735 6.6881 14 1 7.1459 -2.5635 5.9728 15 6 6.9518 -2.2872 8.1189 16 1 6.2123 -1.8882 8.8131 17 6 7.2196 -3.7572 8.4483 18 7 8.1970 -1.5249 8.2404 19 6 8.5888 -1.0438 9.4613 20 1 7.9802 -1.2267 10.3345 21 6 9.7689 -0.3220 9.5765 22 7 10.5109 -0.0995 8.5124 23 14 10.3038 0.3337 11.2418 24 1 9.3030 -0.0501 12.2697 25 1 11.6253 -0.2418 11.5992 26 1 10.4086 1.8137 11.1807 27 6 5.0565 -2.8908 6.5431 28 6 2.7931 -2.6584 2.2066 29 8 3.1054 -3.9705 2.0850 30 7 2.3422 -1.9902 1.1582 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.9011 1.0394 2.4586 39 1 2.7296 -0.1325 4.4825 40 1 4.1780 -0.1282 5.3989 41 1 5.4108 -0.7596 4.2740 42 1 6.9026 -0.1652 5.9616 43 1 5.6308 -0.2047 7.2267 44 1 7.8892 -4.1810 7.6998 45 1 7.6820 -3.8306 9.4326 46 1 6.2786 -4.3071 8.4470 47 1 8.7438 -1.3609 7.4562 48 1 11.3357 0.4045 8.5930 49 1 5.2048 -3.9491 6.3285 50 1 4.4651 -2.7677 7.4505 51 1 2.3669 -4.5688 2.2633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699950201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:29 Heat of formation + Delta-G solvation = -56.709322 kcal Electronic energy + Delta-G solvation = -30654.486954 eV Core-core repulsion = 26553.181073 eV Total energy + Delta-G solvation = -4101.305881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13301 -40.79182 -39.13905 -38.47013 -36.82080 -36.05735 -34.38328 -33.66285 -31.96600 -30.87834 -30.67017 -28.82674 -28.00760 -26.58747 -25.80189 -24.47271 -24.26422 -22.80480 -21.80862 -21.11808 -20.97071 -19.39529 -19.16794 -18.49549 -18.24159 -17.24915 -17.02875 -16.97892 -16.39959 -16.02563 -15.71351 -15.31761 -15.27545 -15.08709 -14.73293 -14.63396 -14.36008 -14.29998 -13.96413 -13.86531 -13.66890 -13.51043 -13.37044 -13.19828 -12.92466 -12.90143 -12.85082 -12.79267 -12.38224 -12.32535 -12.11551 -12.05794 -11.98747 -11.83602 -11.66604 -11.55451 -11.43003 -11.29657 -11.01711 -10.91303 -10.50281 -9.96627 -9.73570 -8.96486 -7.89847 -5.16836 -0.45372 0.02689 1.45841 1.49185 1.50659 1.59357 1.81856 2.34482 2.58860 2.59920 3.16977 3.41197 3.44806 3.53251 3.61967 3.67603 3.83991 3.91226 4.05598 4.11860 4.20859 4.24720 4.29200 4.34800 4.40860 4.49334 4.57905 4.60080 4.64835 4.70299 4.79486 4.84421 4.86458 4.87268 4.96844 4.97121 5.04370 5.05086 5.11017 5.19743 5.22219 5.30806 5.36500 5.38122 5.42729 5.45009 5.56851 5.61089 6.31654 6.34254 6.42203 6.76725 6.90510 7.39370 8.15132 8.38581 9.33659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.002187 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.346288 B =12799.382370 C =13933.078957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C -0.146 4.146 4 C 0.172 3.828 5 C -0.173 4.173 6 C -0.025 4.025 7 C -0.214 4.214 8 C 0.584 3.416 9 O -0.569 6.569 10 N -0.609 5.609 11 C 0.100 3.900 12 C -0.111 4.111 13 C -0.095 4.095 14 H 0.071 0.929 15 C 0.184 3.816 16 H 0.052 0.948 17 C -0.161 4.161 18 N -0.730 5.730 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.300 1.300 26 H -0.294 1.294 27 C 0.122 3.878 28 C 0.347 3.653 29 O -0.490 6.490 30 N -0.526 5.526 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.373 0.627 48 H 0.248 0.752 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.008 3.775 -16.466 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.204 4.204 4 C 0.034 3.966 5 C -0.192 4.192 6 C -0.050 4.050 7 C -0.221 4.221 8 C 0.373 3.627 9 O -0.450 6.450 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.149 4.149 13 C -0.115 4.115 14 H 0.090 0.910 15 C 0.075 3.925 16 H 0.070 0.930 17 C -0.221 4.221 18 N -0.370 5.370 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.228 1.228 26 H -0.222 1.222 27 C -0.001 4.001 28 C 0.168 3.832 29 O -0.300 6.300 30 N -0.245 5.245 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.201 0.799 39 H 0.188 0.812 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.205 0.795 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -22.851 2.887 -17.061 28.664 hybrid contribution 0.955 -0.036 1.493 1.772 sum -21.896 2.851 -15.569 27.018 Atomic orbital electron populations 1.21799 0.92143 1.01915 1.03728 1.20257 0.97214 0.96395 0.93083 1.21955 1.01207 0.93073 1.04129 1.21790 0.90656 0.87548 0.96626 1.22309 1.01682 1.03549 0.91632 1.22135 0.91369 0.90615 1.00890 1.20889 1.10183 0.97311 0.93684 1.17751 0.78532 0.84745 0.81677 1.90743 1.58937 1.22147 1.73130 1.48541 1.37496 1.17072 1.31026 1.22401 0.96927 0.82922 0.99940 1.22509 0.97884 0.96164 0.98325 1.22463 0.95242 0.96184 0.97569 0.91050 1.20291 0.87963 0.90930 0.93312 0.92998 1.22381 1.00832 0.98263 1.00639 1.42531 1.23559 1.63622 1.07317 1.19597 1.03253 1.25013 0.88116 0.90706 1.25440 0.98412 1.02852 1.00068 1.69807 1.15877 1.47041 1.29252 0.85187 0.77547 0.77351 0.80382 1.19152 1.22757 1.22165 1.22267 0.92179 0.96998 0.88642 1.19162 0.91173 0.86085 0.86806 1.84613 1.40560 1.12648 1.92219 1.67108 1.14379 1.11267 1.31766 0.91295 0.89938 0.93773 0.90004 0.90286 0.92797 0.90186 0.79909 0.81229 0.88272 0.90931 0.90518 0.90176 0.94086 0.94373 0.91510 0.79550 0.94265 0.91175 0.90136 0.71963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 71.98 0.66 -0.53 16 2 C -0.05 -0.56 3.23 -11.54 -0.04 -0.60 16 3 C -0.15 -0.96 8.61 71.98 0.62 -0.34 16 4 C 0.17 2.86 5.79 42.58 0.25 3.10 16 5 C -0.17 -2.17 9.15 22.32 0.20 -1.96 16 6 C -0.02 -0.39 8.66 22.72 0.20 -0.19 16 7 C -0.21 -5.03 5.46 -19.91 -0.11 -5.14 16 8 C 0.58 16.57 7.19 86.69 0.62 17.20 16 9 O -0.57 -19.64 16.74 6.98 0.12 -19.52 16 10 N -0.61 -15.73 3.34 -814.73 -2.72 -18.45 16 11 C 0.10 2.09 5.60 86.73 0.49 2.58 16 12 C -0.11 -2.94 6.19 31.78 0.20 -2.74 16 13 C -0.09 -2.84 2.63 -9.40 -0.02 -2.86 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.18 6.64 2.40 44.99 0.11 6.75 16 16 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 17 C -0.16 -5.54 9.23 71.98 0.66 -4.88 16 18 N -0.73 -34.27 4.89 -322.94 -1.58 -35.85 16 19 C -0.23 -12.00 9.93 84.03 0.83 -11.16 16 20 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.97 -57.53 13.06 21.65 0.28 -57.24 16 23 Si 0.96 45.06 29.55 68.60 2.03 47.09 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 C 0.12 3.33 5.51 86.80 0.48 3.80 16 28 C 0.35 8.86 7.74 85.13 0.66 9.52 16 29 O -0.49 -12.99 12.54 -76.27 -0.96 -13.95 16 30 N -0.53 -12.28 10.28 -296.05 -3.04 -15.32 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 0.27 6.47 -2.39 -0.02 0.25 16 36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.18 0.93 6.28 -2.91 -0.02 0.91 16 39 H 0.17 1.84 5.85 -2.91 -0.02 1.83 16 40 H 0.10 1.46 5.94 -2.39 -0.01 1.45 16 41 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 2.16 8.04 -2.38 -0.02 2.14 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.90 7.59 -2.39 -0.02 1.88 16 47 H 0.37 19.00 7.80 -92.71 -0.72 18.27 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 50 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16 51 H 0.42 8.03 9.06 -74.06 -0.67 7.36 16 Total: -1.00 -72.47 410.66 -0.03 -72.51 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.44 Total: 31.91 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.27 Total: 8.83 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -7.06 Total: -126.86 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.84 Total: -33.47 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.47 -0.03 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699950201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.799 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds