Wall clock time and date at job start Wed Apr 1 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 C 1.50699 * 109.47333 * 119.99770 * 2 1 3 5 5 C 1.38350 * 119.40909 * 274.98492 * 4 2 1 6 6 C 1.38332 * 119.46130 * 179.76474 * 5 4 2 7 7 C 1.39993 * 118.34772 * 0.49260 * 6 5 4 8 8 C 1.47522 * 120.60086 * 179.78124 * 7 6 5 9 9 O 1.21589 * 120.00091 * 225.87689 * 8 7 6 10 10 N 1.34777 * 119.99964 * 45.87008 * 8 7 6 11 11 C 1.47027 * 125.64777 * 355.18202 * 10 8 7 12 12 C 1.54321 * 107.27241 * 178.90159 * 11 10 8 13 13 C 1.55161 * 102.94106 * 337.80736 * 12 11 10 14 14 H 1.09003 * 111.00444 * 277.38779 * 13 12 11 15 15 C 1.52998 * 111.00377 * 153.57605 * 13 12 11 16 16 H 1.09005 * 109.47215 * 303.17874 * 15 13 12 17 17 C 1.52995 * 109.47362 * 63.17901 * 15 13 12 18 18 N 1.46504 * 109.47271 * 183.18002 * 15 13 12 19 19 C 1.36940 * 119.99975 * 154.99565 * 18 15 13 20 20 H 1.07998 * 120.00074 * 0.28261 * 19 18 15 21 21 C 1.38813 * 119.99824 * 179.97438 * 19 18 15 22 22 N 1.31613 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99939 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47452 * 89.99303 * 23 21 19 25 25 H 1.48505 * 109.47053 * 209.99923 * 23 21 19 26 26 H 1.48506 * 109.47384 * 329.99407 * 23 21 19 27 27 C 1.47467 * 125.62983 * 175.09808 * 10 8 7 28 28 C 1.40277 * 118.80222 * 359.50916 * 7 6 5 29 29 O 1.35429 * 119.79909 * 180.26731 * 28 7 6 30 30 N 1.31881 * 119.40352 * 95.00242 * 4 2 1 31 31 H 1.08995 * 109.47517 * 300.00003 * 1 2 3 32 32 H 1.09006 * 109.47298 * 60.00231 * 1 2 3 33 33 H 1.09004 * 109.46696 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47266 * 240.00419 * 2 1 3 35 35 H 1.09004 * 109.47213 * 60.00072 * 3 2 1 36 36 H 1.09000 * 109.46913 * 179.97438 * 3 2 1 37 37 H 1.08992 * 109.47237 * 299.99767 * 3 2 1 38 38 H 1.08010 * 120.27276 * 0.04259 * 5 4 2 39 39 H 1.08004 * 120.82933 * 180.25172 * 6 5 4 40 40 H 1.09005 * 109.88263 * 59.48664 * 11 10 8 41 41 H 1.09001 * 110.01239 * 298.39332 * 11 10 8 42 42 H 1.08995 * 110.72137 * 219.44710 * 12 11 10 43 43 H 1.08998 * 110.87412 * 96.23884 * 12 11 10 44 44 H 1.09003 * 109.47599 * 180.02562 * 17 15 13 45 45 H 1.09000 * 109.47388 * 299.99881 * 17 15 13 46 46 H 1.08999 * 109.47288 * 60.00108 * 17 15 13 47 47 H 0.97000 * 119.99535 * 335.00531 * 18 15 13 48 48 H 0.96994 * 120.00151 * 179.97438 * 22 21 19 49 49 H 1.08994 * 110.34931 * 85.32307 * 27 10 8 50 50 H 1.08999 * 110.40493 * 322.98649 * 27 10 8 51 51 H 0.96709 * 113.99730 * 90.00476 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.1601 -0.0082 2.4157 6 6 2.6165 -0.6604 3.5470 7 6 2.9447 -2.0174 3.4451 8 6 3.4408 -2.7603 4.6191 9 8 4.4088 -3.4884 4.5133 10 7 2.8210 -2.6319 5.8090 11 6 1.7090 -1.7156 6.1014 12 6 1.3094 -1.9358 7.5757 13 6 1.8426 -3.3627 7.8708 14 1 1.1405 -4.1215 7.5253 15 6 2.1455 -3.5377 9.3603 16 1 2.8580 -2.7764 9.6781 17 6 0.8519 -3.3930 10.1643 18 7 2.7168 -4.8672 9.5895 19 6 3.5215 -5.0887 10.6752 20 1 3.7313 -4.2846 11.3649 21 6 4.0623 -6.3485 10.8927 22 7 4.8361 -6.5614 11.9359 23 14 3.6930 -7.7414 9.7040 24 1 4.7175 -7.7597 8.6292 25 1 3.7178 -9.0345 10.4338 26 1 2.3499 -7.5373 9.1042 27 6 3.1451 -3.3885 7.0326 28 6 2.7880 -2.6596 2.2078 29 8 3.0943 -3.9733 2.0878 30 7 2.3427 -1.9901 1.1580 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.9013 1.0396 2.4585 39 1 2.7208 -0.1347 4.4847 40 1 0.8634 -1.9393 5.4508 41 1 2.0272 -0.6836 5.9538 42 1 0.2263 -1.8973 7.6916 43 1 1.7913 -1.2026 8.2224 44 1 1.0678 -3.5172 11.2255 45 1 0.4269 -2.4039 9.9938 46 1 0.1395 -4.1543 9.8465 47 1 2.5251 -5.5904 8.9722 48 1 5.2137 -7.4417 12.0881 49 1 3.9554 -2.9021 7.5755 50 1 3.4161 -4.4147 6.7842 51 1 2.3534 -4.5680 2.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699950212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:34 Heat of formation + Delta-G solvation = -26.515026 kcal Electronic energy + Delta-G solvation = -30883.438429 eV Core-core repulsion = 26783.441871 eV Total energy + Delta-G solvation = -4099.996558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29818 -39.80331 -38.12692 -37.52770 -35.58736 -35.30645 -33.16389 -32.36085 -30.88798 -30.07991 -29.02412 -28.38318 -27.66979 -25.44187 -23.97416 -23.57408 -23.31319 -21.43883 -21.19348 -19.96128 -19.91519 -18.62552 -17.80789 -17.45016 -17.28106 -16.49707 -15.93280 -15.73112 -15.32891 -14.87953 -14.78258 -14.29959 -14.24475 -14.06529 -13.87983 -13.60151 -13.46355 -13.05646 -12.97262 -12.78680 -12.59981 -12.50683 -12.40161 -12.20429 -12.12846 -11.88142 -11.81831 -11.71894 -11.64602 -11.36424 -11.02534 -10.89745 -10.68444 -10.62878 -10.38661 -10.23793 -10.18784 -9.98882 -9.66307 -9.58361 -9.17938 -8.94437 -8.65852 -7.28964 -5.76957 -3.12966 0.33472 0.73176 2.54493 2.79421 3.10923 3.33272 3.38834 3.42584 3.48055 3.96027 4.13336 4.25960 4.49024 4.53353 4.54488 4.59976 4.63247 4.68286 4.76461 4.83501 5.02384 5.10460 5.13708 5.15054 5.24790 5.30525 5.35745 5.40592 5.45365 5.50289 5.52880 5.61916 5.65639 5.72829 5.74477 5.76815 5.80265 5.90597 6.01408 6.02106 6.11741 6.20215 6.25251 6.34151 6.43589 6.73020 6.94445 7.17306 7.41045 7.51386 7.97886 8.06631 8.41792 9.19717 9.92512 10.11245 11.41272 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.002409 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.862460 B =11621.316122 C =12491.725928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.149 4.149 4 C 0.177 3.823 5 C -0.186 4.186 6 C -0.031 4.031 7 C -0.194 4.194 8 C 0.574 3.426 9 O -0.512 6.512 10 N -0.614 5.614 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.106 4.106 14 H 0.080 0.920 15 C 0.190 3.810 16 H 0.059 0.941 17 C -0.164 4.164 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.118 3.882 28 C 0.364 3.636 29 O -0.464 6.464 30 N -0.503 5.503 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 18.902 -22.596 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.038 3.962 5 C -0.206 4.206 6 C -0.057 4.057 7 C -0.200 4.200 8 C 0.360 3.640 9 O -0.386 6.386 10 N -0.349 5.349 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.126 4.126 14 H 0.099 0.901 15 C 0.080 3.920 16 H 0.077 0.923 17 C -0.224 4.224 18 N -0.391 5.391 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.003 4.003 28 C 0.185 3.815 29 O -0.271 6.271 30 N -0.222 5.222 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -12.114 18.186 -23.399 32.016 hybrid contribution -0.538 -0.997 0.192 1.149 sum -12.652 17.190 -23.207 31.530 Atomic orbital electron populations 1.21806 0.93144 1.02529 1.02419 1.20156 0.96494 0.95557 0.94777 1.21949 1.01600 0.94473 1.02607 1.21173 0.91791 0.88226 0.95003 1.21922 1.03697 1.02017 0.92941 1.21839 0.92003 0.92354 0.99484 1.21020 1.07606 0.96405 0.94991 1.17486 0.83146 0.82017 0.81308 1.90880 1.25341 1.38520 1.83908 1.48516 1.35116 1.41044 1.10227 1.22215 0.89289 0.93331 0.97695 1.22679 1.01785 0.97780 0.93908 1.22726 0.96056 0.96447 0.97373 0.90148 1.20126 0.93669 0.89057 0.89134 0.92345 1.22412 0.98880 0.99196 1.01943 1.42792 1.59055 1.06827 1.30466 1.19023 1.20436 0.96787 1.01000 0.89191 1.24657 0.99495 0.97263 0.97572 1.69690 1.36910 1.22429 1.29040 0.86602 0.78031 0.83003 0.81193 1.20906 1.21803 1.20403 1.22329 0.97717 0.97221 0.83017 1.19043 0.90255 0.86206 0.86034 1.84805 1.38579 1.11697 1.92027 1.67074 1.13641 1.09834 1.31606 0.92263 0.91572 0.92203 0.88879 0.91909 0.92150 0.91509 0.83588 0.83488 0.91665 0.91476 0.89861 0.89959 0.92247 0.94061 0.93637 0.80689 0.93060 0.90434 0.90132 0.73875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.17 37.16 0.34 -0.36 16 2 C -0.05 -0.32 3.23 -91.77 -0.30 -0.61 16 3 C -0.15 -0.65 8.61 37.16 0.32 -0.33 16 4 C 0.18 1.57 5.79 -82.53 -0.48 1.09 16 5 C -0.19 -1.37 9.15 -39.51 -0.36 -1.73 16 6 C -0.03 -0.27 8.66 -38.89 -0.34 -0.61 16 7 C -0.19 -2.38 5.46 -104.69 -0.57 -2.95 16 8 C 0.57 8.71 7.18 -12.48 -0.09 8.62 16 9 O -0.51 -10.14 16.72 -6.22 -0.10 -10.24 16 10 N -0.61 -8.16 3.33 -171.71 -0.57 -8.74 16 11 C 0.10 0.90 5.61 -3.06 -0.02 0.88 16 12 C -0.12 -1.19 5.44 -24.90 -0.14 -1.33 16 13 C -0.11 -1.45 2.64 -88.47 -0.23 -1.69 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.19 3.27 2.40 -67.93 -0.16 3.11 16 16 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 17 C -0.16 -2.57 9.31 37.16 0.35 -2.22 16 18 N -0.75 -16.80 4.70 -53.42 -0.25 -17.05 16 19 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 23 Si 0.88 22.28 27.73 -169.99 -4.71 17.57 16 24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C 0.12 1.85 6.15 -2.50 -0.02 1.83 16 28 C 0.36 4.68 7.74 -16.61 -0.13 4.56 16 29 O -0.46 -6.13 12.54 -29.48 -0.37 -6.50 16 30 N -0.50 -5.92 10.28 -9.21 -0.09 -6.01 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.21 6.47 -51.93 -0.34 -0.13 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.15 0.64 6.28 -52.48 -0.33 0.31 16 39 H 0.15 0.99 5.86 -52.48 -0.31 0.69 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 42 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.51 7.38 -51.93 -0.38 0.12 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.36 8.12 5.66 -40.82 -0.23 7.89 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 49 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 50 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 51 H 0.40 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -36.36 407.24 -8.66 -45.02 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.40 Total: 6.73 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.07 Total: 1.54 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.14 Total: -60.25 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.47 Total: -16.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.36 -8.66 -45.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699950212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds