Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 C 1.50699 * 109.47333 * 119.99770 * 2 1 3 5 5 C 1.38350 * 119.40909 * 274.98492 * 4 2 1 6 6 C 1.38332 * 119.46130 * 179.76474 * 5 4 2 7 7 C 1.39993 * 118.34772 * 0.49260 * 6 5 4 8 8 C 1.47522 * 120.60086 * 179.78124 * 7 6 5 9 9 O 1.21589 * 120.00091 * 225.87689 * 8 7 6 10 10 N 1.34777 * 119.99964 * 45.87008 * 8 7 6 11 11 C 1.47027 * 125.64777 * 355.18202 * 10 8 7 12 12 C 1.54321 * 107.27241 * 178.90159 * 11 10 8 13 13 C 1.55161 * 102.94106 * 337.80736 * 12 11 10 14 14 H 1.09003 * 111.00444 * 277.38779 * 13 12 11 15 15 C 1.52998 * 111.00377 * 153.57605 * 13 12 11 16 16 H 1.09005 * 109.47215 * 303.17874 * 15 13 12 17 17 C 1.52995 * 109.47362 * 63.17901 * 15 13 12 18 18 N 1.46504 * 109.47271 * 183.18002 * 15 13 12 19 19 C 1.36940 * 119.99975 * 154.99565 * 18 15 13 20 20 H 1.07998 * 120.00074 * 0.28261 * 19 18 15 21 21 C 1.38813 * 119.99824 * 179.97438 * 19 18 15 22 22 N 1.31613 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99939 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47452 * 89.99303 * 23 21 19 25 25 H 1.48505 * 109.47053 * 209.99923 * 23 21 19 26 26 H 1.48506 * 109.47384 * 329.99407 * 23 21 19 27 27 C 1.47467 * 125.62983 * 175.09808 * 10 8 7 28 28 C 1.40277 * 118.80222 * 359.50916 * 7 6 5 29 29 O 1.35429 * 119.79909 * 180.26731 * 28 7 6 30 30 N 1.31881 * 119.40352 * 95.00242 * 4 2 1 31 31 H 1.08995 * 109.47517 * 300.00003 * 1 2 3 32 32 H 1.09006 * 109.47298 * 60.00231 * 1 2 3 33 33 H 1.09004 * 109.46696 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47266 * 240.00419 * 2 1 3 35 35 H 1.09004 * 109.47213 * 60.00072 * 3 2 1 36 36 H 1.09000 * 109.46913 * 179.97438 * 3 2 1 37 37 H 1.08992 * 109.47237 * 299.99767 * 3 2 1 38 38 H 1.08010 * 120.27276 * 0.04259 * 5 4 2 39 39 H 1.08004 * 120.82933 * 180.25172 * 6 5 4 40 40 H 1.09005 * 109.88263 * 59.48664 * 11 10 8 41 41 H 1.09001 * 110.01239 * 298.39332 * 11 10 8 42 42 H 1.08995 * 110.72137 * 219.44710 * 12 11 10 43 43 H 1.08998 * 110.87412 * 96.23884 * 12 11 10 44 44 H 1.09003 * 109.47599 * 180.02562 * 17 15 13 45 45 H 1.09000 * 109.47388 * 299.99881 * 17 15 13 46 46 H 1.08999 * 109.47288 * 60.00108 * 17 15 13 47 47 H 0.97000 * 119.99535 * 335.00531 * 18 15 13 48 48 H 0.96994 * 120.00151 * 179.97438 * 22 21 19 49 49 H 1.08994 * 110.34931 * 85.32307 * 27 10 8 50 50 H 1.08999 * 110.40493 * 322.98649 * 27 10 8 51 51 H 0.96709 * 113.99730 * 90.00476 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.1601 -0.0082 2.4157 6 6 2.6165 -0.6604 3.5470 7 6 2.9447 -2.0174 3.4451 8 6 3.4408 -2.7603 4.6191 9 8 4.4088 -3.4884 4.5133 10 7 2.8210 -2.6319 5.8090 11 6 1.7090 -1.7156 6.1014 12 6 1.3094 -1.9358 7.5757 13 6 1.8426 -3.3627 7.8708 14 1 1.1405 -4.1215 7.5253 15 6 2.1455 -3.5377 9.3603 16 1 2.8580 -2.7764 9.6781 17 6 0.8519 -3.3930 10.1643 18 7 2.7168 -4.8672 9.5895 19 6 3.5215 -5.0887 10.6752 20 1 3.7313 -4.2846 11.3649 21 6 4.0623 -6.3485 10.8927 22 7 4.8361 -6.5614 11.9359 23 14 3.6930 -7.7414 9.7040 24 1 4.7175 -7.7597 8.6292 25 1 3.7178 -9.0345 10.4338 26 1 2.3499 -7.5373 9.1042 27 6 3.1451 -3.3885 7.0326 28 6 2.7880 -2.6596 2.2078 29 8 3.0943 -3.9733 2.0878 30 7 2.3427 -1.9901 1.1580 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.9013 1.0396 2.4585 39 1 2.7208 -0.1347 4.4847 40 1 0.8634 -1.9393 5.4508 41 1 2.0272 -0.6836 5.9538 42 1 0.2263 -1.8973 7.6916 43 1 1.7913 -1.2026 8.2224 44 1 1.0678 -3.5172 11.2255 45 1 0.4269 -2.4039 9.9938 46 1 0.1395 -4.1543 9.8465 47 1 2.5251 -5.5904 8.9722 48 1 5.2137 -7.4417 12.0881 49 1 3.9554 -2.9021 7.5755 50 1 3.4161 -4.4147 6.7842 51 1 2.3534 -4.5680 2.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699950212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = -54.629571 kcal Electronic energy + Delta-G solvation = -30884.657567 eV Core-core repulsion = 26783.441871 eV Total energy + Delta-G solvation = -4101.215696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14309 -40.81009 -39.17607 -38.53786 -36.94847 -36.06727 -34.44299 -33.72554 -32.34671 -30.93344 -30.33811 -29.54868 -27.99851 -26.28859 -25.65758 -24.45952 -24.24937 -22.76748 -21.79410 -21.31642 -20.95513 -19.63251 -19.42768 -18.44678 -18.24587 -17.34376 -17.09478 -16.73563 -16.55899 -16.06378 -15.78646 -15.41656 -15.25122 -15.05690 -14.82118 -14.59225 -14.40153 -14.28984 -14.15450 -13.90571 -13.72272 -13.58020 -13.47655 -13.22308 -12.97899 -12.94859 -12.83832 -12.68049 -12.41699 -12.37446 -12.12735 -12.04895 -11.92432 -11.81057 -11.74031 -11.70137 -11.44114 -11.28942 -11.01111 -10.98530 -10.51011 -9.98121 -9.70943 -9.30245 -8.02345 -5.33414 -0.45154 0.02716 1.33307 1.38224 1.42929 1.47948 1.79631 2.34105 2.46616 2.55850 3.18655 3.30278 3.38462 3.50119 3.60547 3.67141 3.80019 3.89211 3.97849 4.07200 4.13837 4.25144 4.30654 4.39329 4.40402 4.49662 4.59753 4.60774 4.64347 4.78947 4.81077 4.83241 4.87329 4.88405 4.96909 4.98514 5.04976 5.07958 5.09705 5.20338 5.23311 5.30009 5.37387 5.40595 5.43457 5.45447 5.63324 5.79867 6.22640 6.34667 6.43758 6.76804 6.95403 7.09374 7.87443 8.03090 9.19408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.002409 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.862460 B =11621.316122 C =12491.725928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.171 3.829 5 C -0.169 4.169 6 C -0.021 4.021 7 C -0.210 4.210 8 C 0.572 3.428 9 O -0.575 6.575 10 N -0.609 5.609 11 C 0.092 3.908 12 C -0.112 4.112 13 C -0.095 4.095 14 H 0.085 0.915 15 C 0.182 3.818 16 H 0.048 0.952 17 C -0.154 4.154 18 N -0.754 5.754 19 C -0.216 4.216 20 H 0.062 0.938 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.945 3.055 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.250 1.250 27 C 0.118 3.882 28 C 0.344 3.656 29 O -0.490 6.490 30 N -0.527 5.527 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.188 0.812 39 H 0.174 0.826 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.029 0.971 45 H 0.085 0.915 46 H 0.049 0.951 47 H 0.361 0.639 48 H 0.255 0.745 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 22.643 -24.484 37.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.033 3.967 5 C -0.188 4.188 6 C -0.047 4.047 7 C -0.217 4.217 8 C 0.361 3.639 9 O -0.455 6.455 10 N -0.341 5.341 11 C -0.028 4.028 12 C -0.150 4.150 13 C -0.115 4.115 14 H 0.104 0.896 15 C 0.074 3.926 16 H 0.066 0.934 17 C -0.214 4.214 18 N -0.397 5.397 19 C -0.347 4.347 20 H 0.079 0.921 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.773 3.227 24 H -0.218 1.218 25 H -0.224 1.224 26 H -0.175 1.175 27 C -0.005 4.005 28 C 0.165 3.835 29 O -0.299 6.299 30 N -0.246 5.246 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.205 0.795 39 H 0.192 0.808 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.048 0.952 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.194 0.806 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.776 21.998 -25.311 37.060 hybrid contribution 0.542 -1.981 0.727 2.178 sum -15.234 20.017 -24.584 35.173 Atomic orbital electron populations 1.21793 0.91917 1.01934 1.03859 1.20259 0.97379 0.96381 0.92975 1.21959 1.01056 0.93049 1.04270 1.21820 0.90643 0.87458 0.96784 1.22321 1.01595 1.03513 0.91398 1.22135 0.90733 0.90653 1.01161 1.20820 1.09731 0.97836 0.93338 1.17985 0.82301 0.81326 0.82318 1.90837 1.28269 1.41460 1.84952 1.48542 1.35656 1.41035 1.08904 1.22567 0.88520 0.93996 0.97763 1.22737 1.03706 0.94367 0.94158 1.22547 0.95100 0.99938 0.93946 0.89623 1.20416 0.94099 0.85977 0.92094 0.93382 1.22257 0.97679 1.01997 0.99429 1.42885 1.58704 1.09189 1.28959 1.19014 1.19188 0.95525 1.00978 0.92051 1.25395 1.00545 1.00105 0.99626 1.69856 1.39331 1.22783 1.31585 0.85558 0.78892 0.79536 0.78689 1.21761 1.22354 1.17453 1.22132 0.98502 0.95452 0.84410 1.19222 0.91483 0.86066 0.86743 1.84753 1.40072 1.12823 1.92240 1.67102 1.14634 1.11464 1.31423 0.90881 0.90082 0.93827 0.90344 0.89976 0.93023 0.90194 0.79497 0.80833 0.89497 0.88271 0.86602 0.89005 0.95183 0.89630 0.93184 0.80621 0.93594 0.92426 0.93736 0.72457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.17 71.98 0.66 -0.28 16 2 C -0.05 -0.50 3.23 -11.54 -0.04 -0.54 16 3 C -0.15 -0.71 8.61 71.98 0.62 -0.09 16 4 C 0.17 2.62 5.79 42.58 0.25 2.87 16 5 C -0.17 -1.76 9.15 22.32 0.20 -1.56 16 6 C -0.02 -0.30 8.66 22.72 0.20 -0.10 16 7 C -0.21 -4.94 5.46 -19.91 -0.11 -5.05 16 8 C 0.57 17.47 7.18 86.69 0.62 18.10 16 9 O -0.58 -24.17 16.72 7.01 0.12 -24.06 16 10 N -0.61 -15.42 3.33 -815.44 -2.71 -18.14 16 11 C 0.09 1.29 5.61 86.73 0.49 1.78 16 12 C -0.11 -1.62 5.44 31.78 0.17 -1.44 16 13 C -0.10 -2.40 2.64 -9.40 -0.02 -2.43 16 14 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.18 6.04 2.40 44.99 0.11 6.15 16 16 H 0.05 1.70 8.07 -2.38 -0.02 1.68 16 17 C -0.15 -4.41 9.31 71.98 0.67 -3.74 16 18 N -0.75 -33.91 4.70 -322.93 -1.52 -35.43 16 19 C -0.22 -12.13 10.41 84.03 0.87 -11.26 16 20 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.98 -64.15 13.97 21.65 0.30 -63.84 16 23 Si 0.94 47.32 27.73 68.60 1.90 49.22 16 24 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 26 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 27 C 0.12 3.69 6.15 86.85 0.53 4.23 16 28 C 0.34 8.91 7.74 85.13 0.66 9.57 16 29 O -0.49 -13.78 12.54 -76.24 -0.96 -14.74 16 30 N -0.53 -12.11 10.28 -296.06 -3.04 -15.15 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.09 6.47 -2.39 -0.02 0.07 16 36 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.19 0.41 6.28 -2.91 -0.02 0.39 16 39 H 0.17 1.41 5.86 -2.91 -0.02 1.40 16 40 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.10 0.82 5.95 -2.39 -0.01 0.81 16 42 H 0.12 1.05 8.12 -2.39 -0.02 1.03 16 43 H 0.09 1.23 8.04 -2.39 -0.02 1.21 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.70 7.38 -2.39 -0.02 1.68 16 46 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.36 16.10 5.66 -92.71 -0.52 15.58 16 48 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 49 H 0.06 2.00 8.03 -2.39 -0.02 1.99 16 50 H 0.04 1.69 8.09 -2.39 -0.02 1.68 16 51 H 0.41 7.78 9.06 -74.05 -0.67 7.11 16 Total: -1.00 -86.99 407.24 0.14 -86.85 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.30 Total: 22.54 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.35 Total: 12.74 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -6.97 Total: -132.56 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.84 Total: -38.79 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.90 Total: 49.22 kcal Total: -86.99 0.14 -86.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699950212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.221 kcal (2) G-P(sol) polarization free energy of solvation -86.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds