Wall clock time and date at job start Wed Apr 1 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 C 1.50694 * 109.46977 * 120.00063 * 2 1 3 5 5 C 1.38358 * 119.41127 * 274.97539 * 4 2 1 6 6 C 1.38332 * 119.46334 * 179.76661 * 5 4 2 7 7 C 1.39990 * 118.34847 * 0.49918 * 6 5 4 8 8 C 1.47518 * 120.59853 * 179.78008 * 7 6 5 9 9 O 1.21592 * 120.00226 * 225.91675 * 8 7 6 10 10 N 1.34772 * 119.99936 * 45.92006 * 8 7 6 11 11 C 1.47020 * 125.64787 * 355.10572 * 10 8 7 12 12 C 1.54377 * 107.28714 * 178.94375 * 11 10 8 13 13 C 1.55153 * 102.92269 * 337.86336 * 12 11 10 14 14 H 1.09003 * 111.00419 * 277.36026 * 13 12 11 15 15 C 1.52998 * 111.00532 * 153.54639 * 13 12 11 16 16 H 1.08994 * 109.46982 * 63.18040 * 15 13 12 17 17 C 1.53000 * 109.47147 * 303.17814 * 15 13 12 18 18 N 1.46500 * 109.46994 * 183.17980 * 15 13 12 19 19 C 1.36935 * 120.00188 * 205.27780 * 18 15 13 20 20 H 1.08002 * 119.99726 * 359.72143 * 19 18 15 21 21 C 1.38812 * 120.00349 * 179.72434 * 19 18 15 22 22 N 1.31616 * 119.99814 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00036 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47365 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47401 * 119.99847 * 23 21 19 26 26 H 1.48505 * 109.47575 * 240.00096 * 23 21 19 27 27 C 1.47431 * 125.64961 * 175.14635 * 10 8 7 28 28 C 1.40287 * 118.80364 * 359.50355 * 7 6 5 29 29 O 1.35426 * 119.79724 * 180.27231 * 28 7 6 30 30 N 1.31886 * 119.41073 * 95.00277 * 4 2 1 31 31 H 1.09008 * 109.47048 * 59.99886 * 1 2 3 32 32 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46778 * 300.00328 * 1 2 3 34 34 H 1.09004 * 109.47302 * 240.00418 * 2 1 3 35 35 H 1.09004 * 109.47024 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46932 * 299.99978 * 3 2 1 37 37 H 1.08995 * 109.47089 * 59.99728 * 3 2 1 38 38 H 1.08006 * 120.26319 * 0.04173 * 5 4 2 39 39 H 1.08000 * 120.82923 * 180.25564 * 6 5 4 40 40 H 1.09000 * 109.88389 * 298.39107 * 11 10 8 41 41 H 1.09000 * 109.88449 * 59.41067 * 11 10 8 42 42 H 1.09000 * 110.75663 * 219.49361 * 12 11 10 43 43 H 1.09007 * 110.70345 * 96.20750 * 12 11 10 44 44 H 1.08994 * 109.47006 * 59.99951 * 17 15 13 45 45 H 1.09001 * 109.47184 * 180.02562 * 17 15 13 46 46 H 1.09003 * 109.47233 * 300.00026 * 17 15 13 47 47 H 0.97000 * 120.00425 * 24.99444 * 18 15 13 48 48 H 0.97005 * 119.99904 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.36035 * 85.25179 * 27 10 8 50 50 H 1.09002 * 110.46078 * 322.98589 * 27 10 8 51 51 H 0.96694 * 113.99880 * 90.00784 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1602 -0.0083 2.4157 6 6 2.6165 -0.6605 3.5471 7 6 2.9447 -2.0176 3.4451 8 6 3.4407 -2.7604 4.6191 9 8 4.4092 -3.4880 4.5135 10 7 2.8203 -2.6327 5.8087 11 6 1.7086 -1.7162 6.1013 12 6 1.3084 -1.9365 7.5759 13 6 1.8424 -3.3631 7.8709 14 1 1.1405 -4.1222 7.5255 15 6 2.1456 -3.5380 9.3603 16 1 1.2240 -3.4354 9.9332 17 6 3.1452 -2.4690 9.8063 18 7 2.7175 -4.8672 9.5894 19 6 2.5975 -5.4620 10.8169 20 1 2.0851 -4.9493 11.6176 21 6 3.1344 -6.7238 11.0323 22 7 3.7584 -7.3488 10.0565 23 14 2.9712 -7.5348 12.7071 24 1 2.2316 -6.6314 13.6247 25 1 2.2292 -8.8136 12.5678 26 1 4.3227 -7.8046 13.2604 27 6 3.1446 -3.3883 7.0324 28 6 2.7878 -2.6598 2.2077 29 8 3.0940 -3.9735 2.0878 30 7 2.3426 -1.9902 1.1580 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.9015 1.0395 2.4584 39 1 2.7209 -0.1349 4.4847 40 1 2.0298 -0.6850 5.9541 41 1 0.8639 -1.9380 5.4491 42 1 0.2252 -1.8985 7.6920 43 1 1.7924 -1.2026 8.2204 44 1 2.7197 -1.4801 9.6358 45 1 3.3615 -2.5939 10.8673 46 1 4.0668 -2.5717 9.2333 47 1 3.1777 -5.3277 8.8703 48 1 4.1333 -8.2307 10.2069 49 1 3.9548 -2.9015 7.5752 50 1 3.4172 -4.4145 6.7856 51 1 2.3532 -4.5681 2.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699950218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:41 Heat of formation + Delta-G solvation = -24.961619 kcal Electronic energy + Delta-G solvation = -30855.587077 eV Core-core repulsion = 26755.657880 eV Total energy + Delta-G solvation = -4099.929197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24455 -39.78466 -38.09645 -37.48271 -35.51132 -35.12353 -33.12112 -32.35345 -30.66747 -29.97599 -28.77880 -27.72130 -27.63447 -25.49527 -24.24468 -23.62564 -23.47325 -21.79962 -21.16674 -20.05358 -18.87786 -18.57045 -17.55859 -17.39254 -17.04957 -16.44219 -16.01977 -15.65593 -15.26199 -14.78243 -14.70478 -14.39269 -14.26112 -13.92983 -13.64130 -13.57669 -13.46536 -13.30399 -12.99830 -12.78118 -12.65292 -12.47424 -12.21923 -12.07741 -12.07000 -11.81279 -11.66650 -11.59217 -11.32346 -11.13773 -10.96413 -10.88060 -10.59923 -10.35410 -10.32357 -10.21014 -10.13012 -9.88554 -9.64627 -9.59648 -9.12251 -8.93358 -8.53237 -6.98070 -5.76479 -3.06180 0.38914 0.78239 2.61093 2.86661 3.17316 3.38982 3.42918 3.48085 3.50848 4.01182 4.18138 4.32482 4.53282 4.58677 4.59079 4.60900 4.69823 4.72338 4.87300 4.94573 5.07870 5.16110 5.17933 5.28249 5.32148 5.34265 5.39649 5.50221 5.54845 5.57605 5.59405 5.69173 5.73101 5.76017 5.78175 5.84036 5.88640 6.02548 6.06748 6.12712 6.18890 6.26645 6.42646 6.50207 6.66101 6.79847 7.07822 7.24013 7.48944 7.57198 7.69780 8.14107 8.41306 9.52590 10.09421 10.43536 11.45888 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.002163 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.315026 B =12942.094010 C =13597.866845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.149 4.149 4 C 0.176 3.824 5 C -0.187 4.187 6 C -0.032 4.032 7 C -0.193 4.193 8 C 0.573 3.427 9 O -0.512 6.512 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.131 4.131 13 C -0.102 4.102 14 H 0.084 0.916 15 C 0.185 3.815 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.725 5.725 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.110 3.890 28 C 0.365 3.635 29 O -0.464 6.464 30 N -0.503 5.503 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 21.019 -18.587 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.038 3.962 5 C -0.206 4.206 6 C -0.057 4.057 7 C -0.200 4.200 8 C 0.360 3.640 9 O -0.387 6.387 10 N -0.347 5.347 11 C -0.024 4.024 12 C -0.169 4.169 13 C -0.122 4.122 14 H 0.102 0.898 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.232 4.232 18 N -0.366 5.366 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.012 4.012 28 C 0.185 3.815 29 O -0.271 6.271 30 N -0.222 5.222 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.097 0.903 50 H 0.101 0.899 51 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.248 20.220 -19.427 29.228 hybrid contribution -0.152 -0.518 1.599 1.688 sum -8.400 19.702 -17.828 27.867 Atomic orbital electron populations 1.21807 0.93154 1.02551 1.02389 1.20152 0.96493 0.95532 0.94801 1.21947 1.01579 0.94505 1.02578 1.21164 0.91851 0.88244 0.94979 1.21913 1.03776 1.01986 0.92963 1.21830 0.92071 0.92385 0.99443 1.21036 1.07522 0.96380 0.95040 1.17476 0.83205 0.82020 0.81306 1.90878 1.25400 1.38510 1.83891 1.48490 1.35008 1.40966 1.10194 1.22208 0.89322 0.93148 0.97758 1.22846 1.01741 0.98352 0.94007 1.22703 0.96045 0.96026 0.97389 0.89767 1.20072 0.95189 0.87019 0.90288 0.92975 1.22626 1.00604 0.97945 1.02009 1.42448 1.66831 1.14643 1.12705 1.19257 1.30040 0.98424 0.89371 0.91112 1.24757 1.01045 0.97538 0.97619 1.69672 1.42182 1.14888 1.31082 0.86143 0.77191 0.79289 0.83688 1.20595 1.21925 1.21911 1.22510 0.98097 0.97401 0.83154 1.19045 0.90171 0.86238 0.86017 1.84794 1.38645 1.11664 1.92009 1.67068 1.13640 1.09811 1.31654 0.91600 0.92176 0.92272 0.88886 0.92165 0.91543 0.91919 0.83643 0.83540 0.91659 0.91711 0.90035 0.89591 0.94139 0.92682 0.93077 0.78175 0.93504 0.90276 0.89913 0.73764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.18 37.16 0.34 -0.41 16 2 C -0.05 -0.33 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.68 8.61 37.16 0.32 -0.36 16 4 C 0.18 1.63 5.79 -82.53 -0.48 1.15 16 5 C -0.19 -1.44 9.15 -39.50 -0.36 -1.81 16 6 C -0.03 -0.29 8.66 -38.89 -0.34 -0.63 16 7 C -0.19 -2.46 5.46 -104.69 -0.57 -3.03 16 8 C 0.57 9.00 7.18 -12.48 -0.09 8.91 16 9 O -0.51 -10.37 16.73 -6.18 -0.10 -10.47 16 10 N -0.61 -8.53 3.33 -171.72 -0.57 -9.10 16 11 C 0.10 0.98 5.61 -3.04 -0.02 0.97 16 12 C -0.13 -1.39 6.31 -24.87 -0.16 -1.54 16 13 C -0.10 -1.52 3.07 -88.48 -0.27 -1.79 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.18 3.37 2.84 -67.93 -0.19 3.17 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 C -0.17 -2.85 8.85 37.16 0.33 -2.53 16 18 N -0.72 -17.47 5.07 -53.43 -0.27 -17.74 16 19 C -0.24 -6.50 9.93 -15.06 -0.15 -6.64 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 C 0.11 1.78 5.67 -2.53 -0.01 1.76 16 28 C 0.37 4.87 7.74 -16.61 -0.13 4.74 16 29 O -0.46 -6.38 12.54 -29.43 -0.37 -6.75 16 30 N -0.50 -6.12 10.28 -9.21 -0.09 -6.22 16 31 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.22 6.47 -51.93 -0.34 -0.11 16 38 H 0.15 0.68 6.28 -52.48 -0.33 0.35 16 39 H 0.15 1.05 5.86 -52.49 -0.31 0.74 16 40 H 0.07 0.50 5.95 -51.93 -0.31 0.20 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.86 5.75 -51.93 -0.30 0.56 16 44 H 0.04 0.53 6.07 -51.93 -0.32 0.22 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.88 6.04 -51.93 -0.31 0.57 16 47 H 0.38 10.00 7.06 -40.82 -0.29 9.72 16 48 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.08 1.34 5.66 -51.93 -0.29 1.04 16 50 H 0.08 1.59 7.84 -51.93 -0.41 1.18 16 51 H 0.40 3.66 9.06 45.56 0.41 4.08 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -35.43 402.32 -8.79 -44.22 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.98 Total: 9.30 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.17 Total: 0.85 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.21 Total: -60.47 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.47 Total: -17.22 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.43 -8.79 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699950218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.261 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds