Wall clock time and date at job start Wed Apr 1 2020 04:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 N 1.46510 * 109.46941 * 119.99549 * 2 1 3 5 5 C 1.36931 * 119.99944 * 274.99835 * 4 2 1 6 6 H 1.07998 * 120.00255 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00261 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99965 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47019 * 120.00186 * 9 7 5 12 12 H 1.48504 * 109.46871 * 240.00097 * 9 7 5 13 13 C 1.52994 * 109.47046 * 239.99208 * 2 1 3 14 14 H 1.08998 * 110.89217 * 304.54890 * 13 2 1 15 15 C 1.55160 * 111.00185 * 68.47107 * 13 2 1 16 16 C 1.54336 * 103.02085 * 153.38050 * 15 13 2 17 17 N 1.47026 * 107.26596 * 338.13896 * 16 15 13 18 18 C 1.34776 * 125.64972 * 178.85100 * 17 16 15 19 19 O 1.21271 * 119.99787 * 179.69363 * 18 17 16 20 20 C 1.50699 * 119.99633 * 359.69132 * 18 17 16 21 21 C 1.53002 * 109.46657 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46611 * 180.02562 * 21 20 18 23 23 O 1.42907 * 109.46899 * 180.02562 * 22 21 20 24 24 C 1.35909 * 117.00350 * 180.02562 * 23 22 21 25 25 C 1.39136 * 120.47623 * 180.02562 * 24 23 22 26 26 C 1.38532 * 118.37409 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.22246 * 359.97438 * 26 25 24 28 28 N 1.31839 * 120.88578 * 0.02562 * 27 26 25 29 29 C 1.31841 * 121.78280 * 359.70577 * 28 27 26 30 30 C 1.47424 * 108.70097 * 358.58636 * 17 16 15 31 31 H 1.09003 * 109.47187 * 54.75323 * 1 2 3 32 32 H 1.09000 * 109.47164 * 174.75817 * 1 2 3 33 33 H 1.09000 * 109.47255 * 294.75133 * 1 2 3 34 34 H 0.96995 * 119.99616 * 94.99787 * 4 2 1 35 35 H 0.96996 * 120.00122 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.71983 * 271.93731 * 15 13 2 37 37 H 1.08995 * 110.71957 * 35.21249 * 15 13 2 38 38 H 1.09000 * 109.99145 * 218.66820 * 16 15 13 39 39 H 1.09001 * 109.78223 * 97.49492 * 16 15 13 40 40 H 1.08997 * 109.47325 * 59.99972 * 20 18 17 41 41 H 1.09004 * 109.47571 * 299.99650 * 20 18 17 42 42 H 1.09000 * 109.47176 * 60.00343 * 21 20 18 43 43 H 1.08994 * 109.47159 * 299.99650 * 21 20 18 44 44 H 1.08994 * 109.47442 * 299.99427 * 22 21 20 45 45 H 1.09000 * 109.47191 * 60.00205 * 22 21 20 46 46 H 1.07998 * 120.81057 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.38855 * 180.02562 * 26 25 24 48 48 H 1.08000 * 119.55740 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.66282 * 180.29348 * 29 28 27 50 50 H 1.09005 * 110.36678 * 143.19017 * 30 17 16 51 51 H 1.09000 * 110.36701 * 265.40835 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6113 -0.6618 3.5093 8 7 2.9242 -1.9388 3.4504 9 14 2.7890 0.2701 5.1186 10 1 2.3754 1.6825 4.9210 11 1 1.9279 -0.3585 6.1523 12 1 4.2058 0.2271 5.5616 13 6 2.0400 -0.7214 -1.2491 14 1 1.6250 -1.7273 -1.3137 15 6 1.7241 0.0946 -2.5304 16 6 2.8293 -0.3543 -3.5098 17 7 3.9377 -0.8857 -2.7031 18 6 5.0854 -1.4001 -3.1874 19 8 5.9370 -1.8060 -2.4253 20 6 5.3104 -1.4709 -4.6758 21 6 6.6804 -2.0922 -4.9554 22 6 6.9091 -2.1635 -6.4666 23 8 8.1884 -2.7442 -6.7279 24 6 8.5498 -2.8804 -8.0310 25 6 9.7795 -3.4373 -8.3677 26 6 10.1037 -3.5550 -9.7094 27 6 9.2018 -3.1192 -10.6624 28 7 8.0444 -2.5958 -10.3096 29 6 7.6956 -2.4709 -9.0443 30 6 3.5884 -0.7567 -1.2767 31 1 -0.3634 0.5931 -0.8393 32 1 -0.3633 -1.0234 -0.0939 33 1 -0.3634 0.4303 0.9332 34 1 2.2489 -1.6317 1.1528 35 1 3.2468 -2.3962 4.2426 36 1 0.7370 -0.1600 -2.9163 37 1 1.7987 1.1642 -2.3346 38 1 3.1736 0.4961 -4.0983 39 1 2.4443 -1.1324 -4.1689 40 1 5.2737 -0.4663 -5.0971 41 1 4.5337 -2.0847 -5.1320 42 1 6.7166 -3.0969 -4.5343 43 1 7.4574 -1.4788 -4.4994 44 1 6.1322 -2.7766 -6.9232 45 1 6.8730 -1.1586 -6.8874 46 1 10.4649 -3.7690 -7.6018 47 1 11.0495 -3.9828 -10.0075 48 1 9.4492 -3.2079 -11.7100 49 1 6.7367 -2.0415 -8.7940 50 1 3.9583 -1.6154 -0.7164 51 1 3.9979 0.1671 -0.8679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699955927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:00 Heat of formation + Delta-G solvation = -34.325768 kcal Electronic energy + Delta-G solvation = -29203.519901 eV Core-core repulsion = 25103.184644 eV Total energy + Delta-G solvation = -4100.335257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01737 -40.06209 -38.67189 -37.85428 -35.20593 -34.23061 -32.72484 -32.46346 -30.77504 -30.49382 -28.90973 -28.34957 -27.31603 -24.50473 -23.93788 -23.66099 -23.02242 -21.80269 -21.42297 -19.67087 -19.23500 -18.55655 -17.50257 -17.09813 -17.00846 -16.91314 -16.63835 -16.13536 -15.47987 -15.01949 -14.84782 -14.59621 -14.30615 -14.00934 -13.83939 -13.66703 -13.46078 -13.37839 -13.09734 -12.80602 -12.63516 -12.57566 -12.42914 -12.16088 -12.07726 -11.86890 -11.74903 -11.60298 -11.33722 -11.07924 -10.90523 -10.78235 -10.60047 -10.54922 -10.21083 -10.16738 -9.91697 -9.89376 -9.74518 -9.62429 -8.91822 -8.89875 -8.51968 -6.96127 -5.75486 -3.04698 0.65780 0.84536 2.52911 2.68325 3.12531 3.35690 3.44105 3.49393 3.51980 4.02964 4.19343 4.28959 4.42920 4.47680 4.55214 4.58094 4.63808 4.66391 4.74755 4.85077 4.87061 4.98894 5.02042 5.06551 5.11194 5.20294 5.32003 5.47511 5.51353 5.55302 5.64498 5.64634 5.71422 5.86819 5.87623 5.90073 5.92475 6.04981 6.07924 6.15214 6.32170 6.36440 6.38334 6.56477 6.62012 6.80589 6.83560 7.06188 7.50030 7.61777 7.71063 8.23281 8.42393 9.53927 10.10597 10.44934 11.47016 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001575 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.916791 B =17774.481918 C =18895.431046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.125 4.125 16 C 0.100 3.900 17 N -0.620 5.620 18 C 0.524 3.476 19 O -0.536 6.536 20 C -0.132 4.132 21 C -0.105 4.105 22 C 0.057 3.943 23 O -0.306 6.306 24 C 0.084 3.916 25 C -0.111 4.111 26 C -0.131 4.131 27 C 0.055 3.945 28 N -0.451 5.451 29 C 0.014 3.986 30 C 0.120 3.880 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.083 0.917 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 0.000 -29.204 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.098 0.902 15 C -0.163 4.163 16 C -0.023 4.023 17 N -0.355 5.355 18 C 0.312 3.688 19 O -0.412 6.412 20 C -0.172 4.172 21 C -0.143 4.143 22 C -0.018 4.018 23 O -0.218 6.218 24 C 0.036 3.964 25 C -0.138 4.138 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.144 4.144 30 C -0.001 4.001 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.175 0.825 49 H 0.175 0.825 50 H 0.102 0.898 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.671 0.112 -29.116 29.870 hybrid contribution 0.445 -0.046 1.481 1.547 sum 7.116 0.066 -27.634 28.536 Atomic orbital electron populations 1.22441 0.99091 1.00503 1.00358 1.20164 0.91908 0.95149 0.85394 0.93330 1.42422 1.78148 1.10728 1.05274 1.19243 1.36656 0.93842 0.87285 0.91158 1.24732 1.02112 0.95942 0.98034 1.69664 1.50785 1.08650 1.28761 0.86159 0.77319 0.78776 0.84173 1.20597 1.21934 1.21903 1.22676 0.94285 1.00046 0.95173 0.90177 1.22681 0.97666 1.00923 0.95061 1.22063 0.87615 0.98097 0.94513 1.48646 1.16854 1.61008 1.08950 1.20083 0.80699 0.77562 0.90463 1.90759 1.42873 1.47723 1.59884 1.21488 0.98514 1.03336 0.93848 1.21244 0.96764 1.03955 0.92302 1.22943 0.82920 0.97865 0.98058 1.86110 1.36857 1.77422 1.21365 1.20107 0.95017 0.96668 0.84568 1.21013 0.95116 1.00409 0.97216 1.22048 1.01078 0.99499 0.92483 1.22679 0.89855 0.97350 1.00359 1.67524 1.17948 1.11690 1.18881 1.22962 1.00491 1.02829 0.88080 1.22253 0.94790 1.03209 0.79898 0.94458 0.93656 0.92583 0.78274 0.93556 0.90060 0.90378 0.91651 0.91654 0.88724 0.88690 0.89685 0.89734 0.91524 0.91534 0.83869 0.84012 0.82508 0.82453 0.89842 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.29 37.16 0.35 -2.37 16 2 C 0.18 3.37 2.42 -67.93 -0.16 3.21 16 3 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 4 N -0.72 -17.43 4.76 -53.43 -0.25 -17.68 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 9 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 C -0.10 -1.52 2.62 -88.47 -0.23 -1.75 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.32 5.78 -24.89 -0.14 -1.47 16 16 C 0.10 0.96 6.49 -3.06 -0.02 0.94 16 17 N -0.62 -8.42 3.33 -170.51 -0.57 -8.99 16 18 C 0.52 7.36 7.85 -10.99 -0.09 7.27 16 19 O -0.54 -10.10 16.24 5.57 0.09 -10.01 16 20 C -0.13 -1.13 4.89 -27.88 -0.14 -1.26 16 21 C -0.10 -0.97 4.87 -26.73 -0.13 -1.10 16 22 C 0.06 0.41 4.75 37.16 0.18 0.59 16 23 O -0.31 -2.92 10.15 -19.45 -0.20 -3.11 16 24 C 0.08 0.75 6.71 -39.07 -0.26 0.49 16 25 C -0.11 -0.84 10.13 -39.14 -0.40 -1.24 16 26 C -0.13 -0.80 10.11 -39.47 -0.40 -1.20 16 27 C 0.06 0.39 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.23 10.35 -13.12 -0.14 -4.36 16 29 C 0.01 0.12 10.22 -17.37 -0.18 -0.05 16 30 C 0.12 2.02 6.03 -2.53 -0.02 2.00 16 31 H 0.04 0.50 7.75 -51.93 -0.40 0.09 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 43 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.07 0.38 7.67 -51.93 -0.40 -0.02 16 45 H 0.07 0.37 7.69 -51.93 -0.40 -0.03 16 46 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.16 1.02 6.32 -52.48 -0.33 0.69 16 50 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 51 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 LS Contribution 418.45 15.07 6.31 6.31 Total: -1.00 -34.80 418.45 -9.69 -44.50 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.55 Total: 6.21 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.08 Total: -2.83 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.23 Total: -58.44 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.11 Total: -13.13 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.80 -9.69 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.171 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds