Wall clock time and date at job start Wed Apr 1 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 N 1.46510 * 109.46941 * 119.99549 * 2 1 3 5 5 C 1.36931 * 119.99944 * 274.99835 * 4 2 1 6 6 H 1.07998 * 120.00255 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00261 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99965 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47019 * 120.00186 * 9 7 5 12 12 H 1.48504 * 109.46871 * 240.00097 * 9 7 5 13 13 C 1.52994 * 109.47046 * 239.99208 * 2 1 3 14 14 H 1.08998 * 110.89217 * 304.54890 * 13 2 1 15 15 C 1.55160 * 111.00185 * 68.47107 * 13 2 1 16 16 C 1.54336 * 103.02085 * 153.38050 * 15 13 2 17 17 N 1.47026 * 107.26596 * 338.13896 * 16 15 13 18 18 C 1.34776 * 125.64972 * 178.85100 * 17 16 15 19 19 O 1.21271 * 119.99787 * 179.69363 * 18 17 16 20 20 C 1.50699 * 119.99633 * 359.69132 * 18 17 16 21 21 C 1.53002 * 109.46657 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46611 * 180.02562 * 21 20 18 23 23 O 1.42907 * 109.46899 * 180.02562 * 22 21 20 24 24 C 1.35909 * 117.00350 * 180.02562 * 23 22 21 25 25 C 1.39136 * 120.47623 * 180.02562 * 24 23 22 26 26 C 1.38532 * 118.37409 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.22246 * 359.97438 * 26 25 24 28 28 N 1.31839 * 120.88578 * 0.02562 * 27 26 25 29 29 C 1.31841 * 121.78280 * 359.70577 * 28 27 26 30 30 C 1.47424 * 108.70097 * 358.58636 * 17 16 15 31 31 H 1.09003 * 109.47187 * 54.75323 * 1 2 3 32 32 H 1.09000 * 109.47164 * 174.75817 * 1 2 3 33 33 H 1.09000 * 109.47255 * 294.75133 * 1 2 3 34 34 H 0.96995 * 119.99616 * 94.99787 * 4 2 1 35 35 H 0.96996 * 120.00122 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.71983 * 271.93731 * 15 13 2 37 37 H 1.08995 * 110.71957 * 35.21249 * 15 13 2 38 38 H 1.09000 * 109.99145 * 218.66820 * 16 15 13 39 39 H 1.09001 * 109.78223 * 97.49492 * 16 15 13 40 40 H 1.08997 * 109.47325 * 59.99972 * 20 18 17 41 41 H 1.09004 * 109.47571 * 299.99650 * 20 18 17 42 42 H 1.09000 * 109.47176 * 60.00343 * 21 20 18 43 43 H 1.08994 * 109.47159 * 299.99650 * 21 20 18 44 44 H 1.08994 * 109.47442 * 299.99427 * 22 21 20 45 45 H 1.09000 * 109.47191 * 60.00205 * 22 21 20 46 46 H 1.07998 * 120.81057 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.38855 * 180.02562 * 26 25 24 48 48 H 1.08000 * 119.55740 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.66282 * 180.29348 * 29 28 27 50 50 H 1.09005 * 110.36678 * 143.19017 * 30 17 16 51 51 H 1.09000 * 110.36701 * 265.40835 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6113 -0.6618 3.5093 8 7 2.9242 -1.9388 3.4504 9 14 2.7890 0.2701 5.1186 10 1 2.3754 1.6825 4.9210 11 1 1.9279 -0.3585 6.1523 12 1 4.2058 0.2271 5.5616 13 6 2.0400 -0.7214 -1.2491 14 1 1.6250 -1.7273 -1.3137 15 6 1.7241 0.0946 -2.5304 16 6 2.8293 -0.3543 -3.5098 17 7 3.9377 -0.8857 -2.7031 18 6 5.0854 -1.4001 -3.1874 19 8 5.9370 -1.8060 -2.4253 20 6 5.3104 -1.4709 -4.6758 21 6 6.6804 -2.0922 -4.9554 22 6 6.9091 -2.1635 -6.4666 23 8 8.1884 -2.7442 -6.7279 24 6 8.5498 -2.8804 -8.0310 25 6 9.7795 -3.4373 -8.3677 26 6 10.1037 -3.5550 -9.7094 27 6 9.2018 -3.1192 -10.6624 28 7 8.0444 -2.5958 -10.3096 29 6 7.6956 -2.4709 -9.0443 30 6 3.5884 -0.7567 -1.2767 31 1 -0.3634 0.5931 -0.8393 32 1 -0.3633 -1.0234 -0.0939 33 1 -0.3634 0.4303 0.9332 34 1 2.2489 -1.6317 1.1528 35 1 3.2468 -2.3962 4.2426 36 1 0.7370 -0.1600 -2.9163 37 1 1.7987 1.1642 -2.3346 38 1 3.1736 0.4961 -4.0983 39 1 2.4443 -1.1324 -4.1689 40 1 5.2737 -0.4663 -5.0971 41 1 4.5337 -2.0847 -5.1320 42 1 6.7166 -3.0969 -4.5343 43 1 7.4574 -1.4788 -4.4994 44 1 6.1322 -2.7766 -6.9232 45 1 6.8730 -1.1586 -6.8874 46 1 10.4649 -3.7690 -7.6018 47 1 11.0495 -3.9828 -10.0075 48 1 9.4492 -3.2079 -11.7100 49 1 6.7367 -2.0415 -8.7940 50 1 3.9583 -1.6154 -0.7164 51 1 3.9979 0.1671 -0.8679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699955927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:59 Heat of formation + Delta-G solvation = -57.801453 kcal Electronic energy + Delta-G solvation = -29204.537884 eV Core-core repulsion = 25103.184644 eV Total energy + Delta-G solvation = -4101.353239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58268 -41.15244 -39.35502 -38.99501 -36.77692 -35.00607 -34.26231 -33.25138 -32.05266 -31.21734 -29.99894 -29.91261 -28.14642 -25.92022 -25.16458 -24.41959 -23.75679 -22.83626 -22.39852 -21.06928 -20.18649 -19.30842 -19.03907 -18.20512 -17.63170 -17.59232 -17.42459 -17.24829 -16.61055 -16.41248 -15.78451 -15.52659 -15.34349 -15.26349 -14.99785 -14.64948 -14.47646 -14.28794 -14.03660 -13.93389 -13.81190 -13.52419 -13.34388 -13.30638 -13.08386 -12.98429 -12.88619 -12.69042 -12.55501 -12.37430 -12.30472 -12.15379 -12.03386 -11.74369 -11.64644 -11.52109 -11.36199 -10.98305 -10.90788 -10.68732 -10.44763 -9.64285 -9.46258 -8.99167 -7.93531 -5.20933 0.14271 0.28623 1.44821 1.46014 1.55406 1.61935 1.82198 2.24326 2.55612 2.82071 3.38272 3.42476 3.55923 3.64488 3.69570 3.76830 3.86363 3.90667 3.91147 4.02664 4.07969 4.17317 4.28502 4.34037 4.35309 4.42380 4.47964 4.53071 4.56997 4.60901 4.64623 4.66346 4.78827 4.89169 4.93044 4.98659 4.99751 5.05615 5.11494 5.14323 5.15071 5.20586 5.28250 5.38329 5.43125 5.53317 5.58811 5.66741 6.25005 6.28932 6.58381 6.96304 7.15939 7.34530 8.13150 8.33548 9.30369 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001575 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.916791 B =17774.481918 C =18895.431046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.078 0.922 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.300 1.300 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.114 4.114 16 C 0.096 3.904 17 N -0.620 5.620 18 C 0.511 3.489 19 O -0.601 6.601 20 C -0.115 4.115 21 C -0.101 4.101 22 C 0.060 3.940 23 O -0.329 6.329 24 C 0.067 3.933 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.047 3.953 28 N -0.478 5.478 29 C 0.005 3.995 30 C 0.124 3.876 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.150 0.850 47 H 0.173 0.827 48 H 0.182 0.818 49 H 0.175 0.825 50 H 0.032 0.968 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 1.661 -33.074 33.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.096 0.904 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.227 1.227 13 C -0.113 4.113 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.025 4.025 17 N -0.353 5.353 18 C 0.302 3.698 19 O -0.482 6.482 20 C -0.154 4.154 21 C -0.140 4.140 22 C -0.015 4.015 23 O -0.242 6.242 24 C 0.020 3.980 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.110 4.110 28 N -0.188 5.188 29 C -0.152 4.152 30 C 0.001 3.999 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.168 0.832 47 H 0.191 0.809 48 H 0.199 0.801 49 H 0.192 0.808 50 H 0.050 0.950 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.129 1.839 -33.057 33.503 hybrid contribution 0.940 -0.545 2.605 2.822 sum 6.069 1.294 -30.452 31.078 Atomic orbital electron populations 1.22263 0.96889 1.01048 1.00973 1.20464 0.93249 0.94743 0.84705 0.93630 1.42673 1.78453 1.10225 1.06473 1.19656 1.34180 0.94147 0.88292 0.90446 1.25523 1.03391 0.96834 1.01467 1.69832 1.53060 1.10333 1.29116 0.85146 0.76490 0.78415 0.80209 1.18702 1.22169 1.22749 1.22490 0.92263 1.00433 0.96101 0.90611 1.22729 0.99774 1.00462 0.92252 1.22427 0.85711 1.00269 0.94088 1.48770 1.17992 1.60765 1.07792 1.21230 0.79764 0.76128 0.92659 1.90731 1.45068 1.50448 1.61961 1.21499 0.98697 1.05991 0.89254 1.21146 0.96871 1.02064 0.93889 1.22985 0.82779 0.99483 0.96230 1.86070 1.38033 1.78012 1.22046 1.20290 0.95774 0.97640 0.84331 1.21339 0.95131 1.00466 0.98317 1.22380 1.02000 0.98433 0.91540 1.23194 0.89396 0.96549 1.01868 1.67554 1.19178 1.12808 1.19274 1.23205 1.01166 1.02975 0.87840 1.21906 0.96329 0.99663 0.82030 0.90030 0.93860 0.94966 0.79991 0.94358 0.86916 0.89635 0.88290 0.88452 0.85114 0.85249 0.92262 0.92162 0.89423 0.89342 0.83227 0.80949 0.80082 0.80816 0.94953 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.29 71.98 0.67 -4.08 16 2 C 0.18 6.40 2.42 44.99 0.11 6.51 16 3 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 4 N -0.74 -36.75 4.76 -322.94 -1.54 -38.29 16 5 C -0.23 -12.82 9.93 84.03 0.83 -11.98 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 8 N -0.97 -61.50 13.06 21.65 0.28 -61.21 16 9 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 10 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 13 C -0.09 -2.69 2.62 -9.40 -0.02 -2.72 16 14 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.11 -1.93 5.78 31.79 0.18 -1.74 16 16 C 0.10 1.39 6.49 86.73 0.56 1.95 16 17 N -0.62 -16.22 3.33 -811.76 -2.70 -18.92 16 18 C 0.51 14.32 7.85 87.66 0.69 15.00 16 19 O -0.60 -24.32 16.24 -3.00 -0.05 -24.37 16 20 C -0.12 -1.66 4.89 29.85 0.15 -1.51 16 21 C -0.10 -1.83 4.87 30.60 0.15 -1.68 16 22 C 0.06 0.75 4.75 71.98 0.34 1.09 16 23 O -0.33 -6.16 10.15 -92.52 -0.94 -7.09 16 24 C 0.07 1.14 6.71 22.60 0.15 1.29 16 25 C -0.13 -1.81 10.13 22.56 0.23 -1.58 16 26 C -0.12 -1.28 10.11 22.34 0.23 -1.05 16 27 C 0.05 0.59 11.18 84.70 0.95 1.53 16 28 N -0.48 -8.22 10.35 -195.44 -2.02 -10.25 16 29 C 0.01 0.09 10.22 84.80 0.87 0.95 16 30 C 0.12 4.36 6.03 86.86 0.52 4.89 16 31 H 0.08 1.84 7.75 -2.39 -0.02 1.82 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 35 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.09 1.37 7.98 -2.39 -0.02 1.35 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.35 8.10 -2.39 -0.02 1.34 16 43 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.09 0.73 7.67 -2.39 -0.02 0.72 16 45 H 0.09 0.72 7.69 -2.39 -0.02 0.71 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 48 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.17 1.86 6.32 -2.91 -0.02 1.84 16 50 H 0.03 1.44 8.04 -2.38 -0.02 1.42 16 51 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 Total: -1.00 -84.15 418.45 2.32 -81.83 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.19 Total: 26.34 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 7.07 Total: 2.61 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.98 Total: -128.67 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.99 Total: -31.46 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -84.15 2.32 -81.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.028 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds