Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46988 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47350 * 120.00090 * 9 7 5 12 12 H 1.48504 * 109.47178 * 240.00742 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09007 * 110.88488 * 57.57165 * 13 2 1 15 15 C 1.55152 * 111.00775 * 181.45284 * 13 2 1 16 16 C 1.54323 * 102.94352 * 153.57800 * 15 13 2 17 17 N 1.47026 * 107.27057 * 337.80971 * 16 15 13 18 18 C 1.34779 * 125.64758 * 178.95826 * 17 16 15 19 19 O 1.21281 * 119.99668 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47122 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46968 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.46987 * 180.02562 * 22 21 20 24 24 C 1.35912 * 117.00166 * 180.02562 * 23 22 21 25 25 C 1.39134 * 120.47516 * 179.97438 * 24 23 22 26 26 C 1.38535 * 118.37436 * 180.02562 * 25 24 23 27 27 C 1.38260 * 119.22062 * 359.97438 * 26 25 24 28 28 N 1.31846 * 120.88500 * 0.02562 * 27 26 25 29 29 C 1.31839 * 121.78274 * 359.69664 * 28 27 26 30 30 C 1.47422 * 108.70234 * 358.93900 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 35 35 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.72172 * 271.94222 * 15 13 2 37 37 H 1.09003 * 110.71876 * 35.04241 * 15 13 2 38 38 H 1.09001 * 109.88426 * 97.22635 * 16 15 13 39 39 H 1.08996 * 109.88454 * 218.39109 * 16 15 13 40 40 H 1.09006 * 109.46403 * 299.99369 * 20 18 17 41 41 H 1.08992 * 109.47261 * 59.99171 * 20 18 17 42 42 H 1.08998 * 109.47288 * 299.99376 * 21 20 18 43 43 H 1.09000 * 109.47421 * 59.99862 * 21 20 18 44 44 H 1.08998 * 109.46906 * 299.99976 * 22 21 20 45 45 H 1.09000 * 109.46863 * 59.99887 * 22 21 20 46 46 H 1.08005 * 120.81429 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.38801 * 180.02562 * 26 25 24 48 48 H 1.08002 * 119.55067 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.66069 * 180.29491 * 29 28 27 50 50 H 1.08998 * 110.36791 * 265.28812 * 30 17 16 51 51 H 1.09004 * 110.36363 * 142.96617 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 2.3773 1.6826 -4.9205 11 1 4.2085 0.2274 -5.5597 12 1 1.9311 -0.3584 -6.1524 13 6 2.0400 -0.7212 1.2493 14 1 1.6547 -1.7398 1.2945 15 6 3.5905 -0.7102 1.3037 16 6 3.8841 -0.8149 2.8152 17 7 2.6858 -0.3453 3.5261 18 6 2.5341 -0.2995 4.8645 19 8 1.4974 0.1088 5.3436 20 6 3.6525 -0.7556 5.7658 21 6 3.2255 -0.6007 7.2268 22 6 4.3607 -1.0643 8.1417 23 8 3.9617 -0.9202 9.5063 24 6 4.8622 -1.2899 10.4549 25 6 4.5493 -1.1794 11.8061 26 6 5.4997 -1.5682 12.7359 27 6 6.7182 -2.0500 12.2945 28 7 6.9831 -2.1421 11.0062 29 6 6.1042 -1.7878 10.0896 30 6 1.6781 0.0676 2.5324 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 -1.1525 35 1 3.2490 -2.3961 -4.2418 36 1 4.0012 -1.5678 0.7708 37 1 3.9842 0.2206 0.8953 38 1 4.0909 -1.8514 3.0818 39 1 4.7372 -0.1868 3.0715 40 1 3.8792 -1.8022 5.5621 41 1 4.5388 -0.1491 5.5803 42 1 2.9990 0.4460 7.4301 43 1 2.3389 -1.2070 7.4125 44 1 4.5868 -2.1110 7.9383 45 1 5.2475 -0.4583 7.9561 46 1 3.5892 -0.7989 12.1223 47 1 5.2911 -1.4966 13.7931 48 1 7.4632 -2.3543 13.0148 49 1 6.3556 -1.8820 9.0435 50 1 1.7431 1.1402 2.3494 51 1 0.6778 -0.2001 2.8729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699955930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -35.585372 kcal Electronic energy + Delta-G solvation = -29040.267990 eV Core-core repulsion = 24939.878112 eV Total energy + Delta-G solvation = -4100.389878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04905 -40.16532 -38.70763 -37.90789 -35.24769 -34.30668 -32.75827 -32.44657 -30.81001 -30.49174 -29.37243 -28.12766 -27.11028 -24.76103 -24.16329 -23.55151 -22.91570 -21.83337 -21.42700 -19.67878 -19.32870 -18.59777 -17.54018 -17.16282 -17.05637 -16.96673 -16.72292 -16.25571 -15.58557 -15.04548 -14.87398 -14.59394 -14.27647 -14.02851 -13.86317 -13.51882 -13.48559 -13.45704 -13.16093 -12.83733 -12.64864 -12.60724 -12.46992 -12.40095 -12.15343 -11.94782 -11.76303 -11.70372 -11.24221 -11.13718 -10.93070 -10.74547 -10.61280 -10.42596 -10.21956 -10.19704 -9.98974 -9.91455 -9.84240 -9.66900 -8.95655 -8.93007 -8.65478 -7.00141 -5.80773 -3.09163 0.63163 0.81680 2.47264 2.54330 3.02326 3.33173 3.40160 3.46598 3.48226 4.00793 4.15704 4.24038 4.39788 4.42492 4.51712 4.54130 4.59771 4.70040 4.76594 4.82129 4.86674 4.95437 5.02558 5.07078 5.10342 5.18237 5.28216 5.47667 5.48091 5.50678 5.61411 5.64261 5.65555 5.82461 5.84888 5.87368 5.94835 6.03632 6.04654 6.17935 6.20506 6.35575 6.41583 6.56435 6.60968 6.76367 6.83833 7.06606 7.48081 7.48750 7.67501 8.07992 8.37752 9.49495 10.06305 10.41356 11.41883 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.001435 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.705205 B =19508.408890 C =20284.336338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.116 4.116 16 C 0.097 3.903 17 N -0.617 5.617 18 C 0.527 3.473 19 O -0.545 6.545 20 C -0.133 4.133 21 C -0.103 4.103 22 C 0.056 3.944 23 O -0.306 6.306 24 C 0.084 3.916 25 C -0.111 4.111 26 C -0.132 4.132 27 C 0.056 3.944 28 N -0.451 5.451 29 C 0.015 3.985 30 C 0.113 3.887 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 0.226 29.608 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.316 3.684 19 O -0.423 6.423 20 C -0.173 4.173 21 C -0.141 4.141 22 C -0.019 4.019 23 O -0.218 6.218 24 C 0.036 3.964 25 C -0.138 4.138 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.143 4.143 30 C -0.009 4.009 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.175 0.825 49 H 0.176 0.824 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.180 0.347 29.531 30.173 hybrid contribution -0.423 0.320 -0.930 1.071 sum 5.758 0.668 28.601 29.183 Atomic orbital electron populations 1.22487 0.99219 1.00961 1.00083 1.20133 0.91815 0.95155 0.85453 0.93295 1.42366 1.78154 1.10651 1.05134 1.19270 1.36276 0.93888 0.87301 0.91166 1.24707 1.02235 0.95946 0.97980 1.69659 1.51062 1.08648 1.28765 0.86160 0.77276 0.78840 0.84169 1.20587 1.21934 1.21928 1.22670 0.95375 1.00035 0.94160 0.90147 1.22569 0.96238 1.04316 0.92277 1.22201 0.87400 0.99169 0.93848 1.48607 1.17677 1.63838 1.04918 1.20107 0.88779 0.78368 0.81188 1.90717 1.29654 1.47468 1.74427 1.21495 0.98232 1.03817 0.93799 1.21228 0.97638 1.04257 0.90975 1.22944 0.98848 1.01429 0.78672 1.86094 1.40032 1.80332 1.15379 1.20098 0.90233 0.96000 0.90105 1.21001 1.01315 1.01732 0.89723 1.22050 0.94078 0.98290 1.00726 1.22693 0.96287 0.98884 0.92299 1.67535 1.33051 1.13177 1.02221 1.22976 0.89932 1.01165 1.00198 1.22317 0.92228 0.99069 0.87291 0.93459 0.92720 0.94392 0.78305 0.93604 0.89433 0.90140 0.91496 0.91545 0.88495 0.88538 0.89809 0.89792 0.91452 0.91467 0.83911 0.84009 0.82482 0.82417 0.91291 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.34 37.16 0.35 -2.56 16 2 C 0.18 3.37 2.41 -67.93 -0.16 3.21 16 3 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 4 N -0.72 -16.77 4.82 -53.43 -0.26 -17.02 16 5 C -0.24 -6.24 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 9 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.10 -1.52 2.62 -88.47 -0.23 -1.75 16 14 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 15 C -0.12 -1.57 6.13 -24.90 -0.15 -1.72 16 16 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 17 N -0.62 -7.62 3.33 -170.52 -0.57 -8.18 16 18 C 0.53 6.54 7.85 -10.98 -0.09 6.46 16 19 O -0.54 -8.82 16.24 5.56 0.09 -8.73 16 20 C -0.13 -1.04 4.89 -27.88 -0.14 -1.18 16 21 C -0.10 -0.84 4.87 -26.73 -0.13 -0.97 16 22 C 0.06 0.37 4.75 37.16 0.18 0.55 16 23 O -0.31 -2.72 10.15 -19.46 -0.20 -2.91 16 24 C 0.08 0.71 6.71 -39.07 -0.26 0.44 16 25 C -0.11 -0.79 10.13 -39.14 -0.40 -1.19 16 26 C -0.13 -0.75 10.11 -39.46 -0.40 -1.15 16 27 C 0.06 0.39 11.18 -17.54 -0.20 0.19 16 28 N -0.45 -4.16 10.35 -13.12 -0.14 -4.30 16 29 C 0.02 0.13 10.22 -17.37 -0.18 -0.05 16 30 C 0.11 1.56 5.56 -2.53 -0.01 1.55 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 34 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.07 0.36 7.67 -51.93 -0.40 -0.04 16 45 H 0.07 0.35 7.69 -51.93 -0.40 -0.05 16 46 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 48 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.16 1.01 6.32 -52.49 -0.33 0.68 16 50 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 51 H 0.08 1.11 7.96 -51.93 -0.41 0.69 16 LS Contribution 418.12 15.07 6.30 6.30 Total: -1.00 -33.07 418.12 -9.69 -42.76 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.54 Total: 5.73 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.09 Total: -4.02 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.24 Total: -55.90 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.11 Total: -11.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.07 -9.69 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds