Wall clock time and date at job start Wed Apr 1 2020 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1 6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46988 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47350 * 120.00090 * 9 7 5 12 12 H 1.48504 * 109.47178 * 240.00742 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 H 1.09007 * 110.88488 * 57.57165 * 13 2 1 15 15 C 1.55152 * 111.00775 * 181.45284 * 13 2 1 16 16 C 1.54323 * 102.94352 * 153.57800 * 15 13 2 17 17 N 1.47026 * 107.27057 * 337.80971 * 16 15 13 18 18 C 1.34779 * 125.64758 * 178.95826 * 17 16 15 19 19 O 1.21281 * 119.99668 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.00203 * 359.97438 * 18 17 16 21 21 C 1.52996 * 109.47122 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46968 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.46987 * 180.02562 * 22 21 20 24 24 C 1.35912 * 117.00166 * 180.02562 * 23 22 21 25 25 C 1.39134 * 120.47516 * 179.97438 * 24 23 22 26 26 C 1.38535 * 118.37436 * 180.02562 * 25 24 23 27 27 C 1.38260 * 119.22062 * 359.97438 * 26 25 24 28 28 N 1.31846 * 120.88500 * 0.02562 * 27 26 25 29 29 C 1.31839 * 121.78274 * 359.69664 * 28 27 26 30 30 C 1.47422 * 108.70234 * 358.93900 * 17 16 15 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 35 35 H 0.97005 * 120.00673 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.72172 * 271.94222 * 15 13 2 37 37 H 1.09003 * 110.71876 * 35.04241 * 15 13 2 38 38 H 1.09001 * 109.88426 * 97.22635 * 16 15 13 39 39 H 1.08996 * 109.88454 * 218.39109 * 16 15 13 40 40 H 1.09006 * 109.46403 * 299.99369 * 20 18 17 41 41 H 1.08992 * 109.47261 * 59.99171 * 20 18 17 42 42 H 1.08998 * 109.47288 * 299.99376 * 21 20 18 43 43 H 1.09000 * 109.47421 * 59.99862 * 21 20 18 44 44 H 1.08998 * 109.46906 * 299.99976 * 22 21 20 45 45 H 1.09000 * 109.46863 * 59.99887 * 22 21 20 46 46 H 1.08005 * 120.81429 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.38801 * 180.02562 * 26 25 24 48 48 H 1.08002 * 119.55067 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.66069 * 180.29491 * 29 28 27 50 50 H 1.08998 * 110.36791 * 265.28812 * 30 17 16 51 51 H 1.09004 * 110.36363 * 142.96617 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9255 -1.9387 -3.4498 9 14 2.7914 0.2702 -5.1179 10 1 2.3773 1.6826 -4.9205 11 1 4.2085 0.2274 -5.5597 12 1 1.9311 -0.3584 -6.1524 13 6 2.0400 -0.7212 1.2493 14 1 1.6547 -1.7398 1.2945 15 6 3.5905 -0.7102 1.3037 16 6 3.8841 -0.8149 2.8152 17 7 2.6858 -0.3453 3.5261 18 6 2.5341 -0.2995 4.8645 19 8 1.4974 0.1088 5.3436 20 6 3.6525 -0.7556 5.7658 21 6 3.2255 -0.6007 7.2268 22 6 4.3607 -1.0643 8.1417 23 8 3.9617 -0.9202 9.5063 24 6 4.8622 -1.2899 10.4549 25 6 4.5493 -1.1794 11.8061 26 6 5.4997 -1.5682 12.7359 27 6 6.7182 -2.0500 12.2945 28 7 6.9831 -2.1421 11.0062 29 6 6.1042 -1.7878 10.0896 30 6 1.6781 0.0676 2.5324 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 -1.1525 35 1 3.2490 -2.3961 -4.2418 36 1 4.0012 -1.5678 0.7708 37 1 3.9842 0.2206 0.8953 38 1 4.0909 -1.8514 3.0818 39 1 4.7372 -0.1868 3.0715 40 1 3.8792 -1.8022 5.5621 41 1 4.5388 -0.1491 5.5803 42 1 2.9990 0.4460 7.4301 43 1 2.3389 -1.2070 7.4125 44 1 4.5868 -2.1110 7.9383 45 1 5.2475 -0.4583 7.9561 46 1 3.5892 -0.7989 12.1223 47 1 5.2911 -1.4966 13.7931 48 1 7.4632 -2.3543 13.0148 49 1 6.3556 -1.8820 9.0435 50 1 1.7431 1.1402 2.3494 51 1 0.6778 -0.2001 2.8729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699955930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:03 Heat of formation + Delta-G solvation = -56.128235 kcal Electronic energy + Delta-G solvation = -29041.158795 eV Core-core repulsion = 24939.878112 eV Total energy + Delta-G solvation = -4101.280683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57958 -41.16390 -39.35175 -38.98767 -36.77253 -34.99233 -34.21396 -33.24800 -31.95377 -31.19187 -30.79081 -29.25202 -28.04518 -26.18627 -25.07952 -24.39415 -23.76226 -22.79075 -22.41221 -21.07582 -20.17987 -19.24861 -19.09463 -18.22516 -17.64611 -17.59698 -17.42917 -17.30368 -16.60049 -16.33047 -15.77097 -15.53389 -15.34143 -15.14085 -14.83339 -14.70235 -14.56842 -14.19950 -14.03275 -13.99748 -13.82607 -13.63567 -13.39730 -13.28341 -13.18277 -12.98030 -12.88534 -12.78674 -12.55143 -12.33220 -12.29285 -12.11567 -11.97360 -11.72272 -11.62037 -11.53601 -11.36237 -10.97516 -10.89297 -10.68540 -10.44170 -9.65393 -9.46271 -8.96615 -7.90609 -5.17263 0.14309 0.29118 1.48709 1.50086 1.58743 1.61419 1.81315 2.23000 2.58607 2.82090 3.37095 3.44073 3.55719 3.65004 3.71079 3.72258 3.85908 3.90756 3.92651 4.03532 4.08173 4.20263 4.30160 4.33074 4.35972 4.39231 4.43273 4.52914 4.54125 4.61357 4.61837 4.65231 4.72156 4.81738 4.91069 4.99449 4.99898 5.03588 5.07833 5.15072 5.15890 5.22806 5.25098 5.36730 5.39512 5.56338 5.58847 5.61210 6.24389 6.31902 6.54511 6.96855 7.12844 7.39174 8.14971 8.38901 9.32796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.001435 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.705205 B =19508.408890 C =20284.336338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.729 5.729 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.298 1.298 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.115 4.115 16 C 0.104 3.896 17 N -0.618 5.618 18 C 0.521 3.479 19 O -0.590 6.590 20 C -0.123 4.123 21 C -0.097 4.097 22 C 0.057 3.943 23 O -0.325 6.325 24 C 0.068 3.932 25 C -0.124 4.124 26 C -0.124 4.124 27 C 0.046 3.954 28 N -0.480 5.480 29 C 0.003 3.997 30 C 0.119 3.881 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.153 0.847 47 H 0.174 0.826 48 H 0.181 0.819 49 H 0.172 0.828 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 0.517 31.447 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.369 5.369 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.193 1.193 11 H -0.222 1.222 12 H -0.226 1.226 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.351 5.351 18 C 0.312 3.688 19 O -0.471 6.471 20 C -0.162 4.162 21 C -0.135 4.135 22 C -0.018 4.018 23 O -0.238 6.238 24 C 0.020 3.980 25 C -0.150 4.150 26 C -0.143 4.143 27 C -0.111 4.111 28 N -0.190 5.190 29 C -0.154 4.154 30 C -0.004 4.004 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.171 0.829 47 H 0.191 0.809 48 H 0.198 0.802 49 H 0.189 0.811 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.503 0.667 31.392 32.283 hybrid contribution -0.894 0.271 -1.400 1.683 sum 6.609 0.937 29.992 30.726 Atomic orbital electron populations 1.22361 0.98319 1.00760 1.00495 1.20305 0.92278 0.94915 0.85248 0.93627 1.42498 1.78286 1.10280 1.05883 1.19596 1.34330 0.94052 0.88360 0.90948 1.25398 1.03291 0.96778 1.00956 1.69795 1.52880 1.10012 1.29133 0.85210 0.76692 0.78221 0.80478 1.19326 1.22174 1.22564 1.22446 0.96556 0.99358 0.93019 0.90590 1.22493 0.94796 1.03195 0.94790 1.22263 0.87226 1.01272 0.91019 1.48680 1.17781 1.63690 1.04968 1.20945 0.89284 0.77348 0.81234 1.90700 1.31816 1.49523 1.75098 1.21523 0.97039 1.05731 0.91946 1.21118 0.97703 1.02779 0.91949 1.22998 0.98474 1.02745 0.77555 1.86057 1.40744 1.80725 1.16302 1.20272 0.90397 0.96744 0.90542 1.21343 1.02212 1.01766 0.89717 1.22389 0.93110 0.96730 1.02103 1.23195 0.97358 0.98437 0.92109 1.67549 1.33838 1.14292 1.03345 1.23186 0.89914 1.01390 1.00889 1.22113 0.92475 0.98743 0.87102 0.93954 0.94532 0.91683 0.79420 0.94220 0.90550 0.91320 0.89077 0.88775 0.85827 0.85677 0.91633 0.91742 0.89791 0.89706 0.82912 0.80860 0.80201 0.81111 0.91389 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.34 71.98 0.67 -4.82 16 2 C 0.18 6.59 2.41 44.99 0.11 6.70 16 3 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 4 N -0.73 -34.17 4.82 -322.94 -1.56 -35.73 16 5 C -0.23 -12.25 9.93 84.03 0.83 -11.42 16 6 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 8 N -0.97 -57.07 13.06 21.65 0.28 -56.78 16 9 Si 0.96 45.07 29.55 68.60 2.03 47.09 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 13 C -0.09 -2.73 2.62 -9.40 -0.02 -2.75 16 14 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 15 C -0.11 -2.96 6.13 31.78 0.19 -2.76 16 16 C 0.10 1.85 6.49 86.73 0.56 2.42 16 17 N -0.62 -13.99 3.33 -811.79 -2.70 -16.69 16 18 C 0.52 12.05 7.85 87.66 0.69 12.73 16 19 O -0.59 -18.98 16.24 -3.03 -0.05 -19.03 16 20 C -0.12 -1.55 4.89 29.85 0.15 -1.41 16 21 C -0.10 -1.47 4.87 30.59 0.15 -1.32 16 22 C 0.06 0.64 4.75 71.98 0.34 0.99 16 23 O -0.33 -5.52 10.15 -92.56 -0.94 -6.45 16 24 C 0.07 1.09 6.71 22.60 0.15 1.24 16 25 C -0.12 -1.61 10.13 22.56 0.23 -1.38 16 26 C -0.12 -1.17 10.11 22.35 0.23 -0.94 16 27 C 0.05 0.56 11.18 84.70 0.95 1.51 16 28 N -0.48 -8.30 10.35 -195.44 -2.02 -10.33 16 29 C 0.00 0.05 10.22 84.80 0.87 0.92 16 30 C 0.12 3.16 5.56 86.86 0.48 3.64 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.87 7.45 -2.38 -0.02 1.85 16 34 H 0.37 18.83 7.80 -92.71 -0.72 18.10 16 35 H 0.25 14.35 8.31 -92.70 -0.77 13.57 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 44 H 0.08 0.67 7.67 -2.39 -0.02 0.66 16 45 H 0.08 0.66 7.69 -2.39 -0.02 0.65 16 46 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 47 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 48 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.17 1.91 6.32 -2.91 -0.02 1.89 16 50 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 51 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 Total: -1.00 -73.36 418.12 2.27 -71.09 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.19 Total: 27.01 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 7.04 Total: -0.18 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.00 Total: -119.53 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.99 Total: -25.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.36 2.27 -71.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.960 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds