Wall clock time and date at job start Wed Apr 1 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 N 1.46502 * 109.46987 * 239.99586 * 2 1 3 5 5 C 1.36941 * 119.99779 * 85.00504 * 4 2 1 6 6 H 1.08006 * 120.00013 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99784 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47328 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47111 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47092 * 330.00045 * 9 7 5 13 13 C 1.53005 * 109.47137 * 119.99911 * 2 1 3 14 14 H 1.08992 * 110.91574 * 57.06826 * 13 2 1 15 15 C 1.55160 * 111.00109 * 293.17005 * 13 2 1 16 16 C 1.54321 * 102.94157 * 206.42501 * 15 13 2 17 17 N 1.47188 * 107.29437 * 22.28370 * 16 15 13 18 18 C 1.34777 * 125.73634 * 181.03089 * 17 16 15 19 19 O 1.21280 * 119.99923 * 179.86277 * 18 17 16 20 20 C 1.50703 * 119.99894 * 359.85989 * 18 17 16 21 21 C 1.53004 * 109.46958 * 180.02562 * 20 18 17 22 22 C 1.52993 * 109.46924 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.46955 * 179.97438 * 22 21 20 24 24 C 1.35918 * 116.99801 * 179.97438 * 23 22 21 25 25 C 1.39141 * 120.46656 * 180.02562 * 24 23 22 26 26 C 1.38538 * 118.36727 * 180.02562 * 25 24 23 27 27 C 1.38253 * 119.22365 * 0.02562 * 26 25 24 28 28 N 1.31846 * 120.89036 * 359.97438 * 27 26 25 29 29 C 1.31851 * 121.77652 * 359.70550 * 28 27 26 30 30 C 1.47417 * 108.61382 * 0.91119 * 17 16 15 31 31 H 1.08997 * 109.46957 * 65.26742 * 1 2 3 32 32 H 1.08995 * 109.46867 * 185.26509 * 1 2 3 33 33 H 1.09002 * 109.46892 * 305.26975 * 1 2 3 34 34 H 0.96997 * 119.99842 * 264.99432 * 4 2 1 35 35 H 0.97003 * 119.99763 * 179.97438 * 8 7 5 36 36 H 1.08997 * 110.72138 * 324.78735 * 15 13 2 37 37 H 1.09000 * 110.72097 * 88.05797 * 15 13 2 38 38 H 1.08995 * 109.88499 * 141.61016 * 16 15 13 39 39 H 1.08997 * 109.88064 * 262.77723 * 16 15 13 40 40 H 1.08999 * 109.47089 * 300.00454 * 20 18 17 41 41 H 1.09000 * 109.47167 * 60.00707 * 20 18 17 42 42 H 1.09010 * 109.46711 * 300.00126 * 21 20 18 43 43 H 1.08999 * 109.47344 * 59.99613 * 21 20 18 44 44 H 1.08998 * 109.47648 * 299.99761 * 22 21 20 45 45 H 1.09000 * 109.47382 * 60.00033 * 22 21 20 46 46 H 1.07995 * 120.81999 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.38820 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.55638 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.66058 * 180.28803 * 29 28 27 50 50 H 1.09002 * 110.37157 * 217.11188 * 30 17 16 51 51 H 1.09007 * 110.36945 * 94.90267 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4495 9 14 2.7902 0.2698 -5.1183 10 1 4.1520 0.8558 -5.2032 11 1 2.5804 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6479 -1.7370 1.2995 15 6 1.6881 0.0749 2.5337 16 6 2.7880 -0.3625 3.5238 17 7 3.9238 -0.8537 2.7269 18 6 5.0775 -1.3456 3.2205 19 8 5.9472 -1.7252 2.4653 20 6 5.2867 -1.4239 4.7109 21 6 6.6679 -2.0145 5.0017 22 6 6.8800 -2.0945 6.5147 23 8 8.1697 -2.6467 6.7863 24 6 8.5185 -2.7864 8.0925 25 6 9.7578 -3.3157 8.4391 26 6 10.0681 -3.4391 9.7837 27 6 9.1437 -3.0362 10.7295 28 7 7.9777 -2.5385 10.3673 29 6 7.6463 -2.3986 9.0988 30 6 3.5884 -0.7207 1.2976 31 1 -0.3633 0.4299 -0.9334 32 1 -0.3633 -1.0233 0.0943 33 1 -0.3633 0.5934 0.8391 34 1 2.2491 -1.6318 -1.1525 35 1 3.2495 -2.3960 -4.2416 36 1 1.7401 1.1478 2.3488 37 1 0.7021 -0.2062 2.9037 38 1 3.1019 0.4881 4.1287 39 1 2.4128 -1.1588 4.1666 40 1 5.2218 -0.4240 5.1399 41 1 4.5191 -2.0593 5.1527 42 1 6.7331 -3.0144 4.5725 43 1 7.4352 -1.3788 4.5599 44 1 6.8146 -1.0949 6.9443 45 1 6.1126 -2.7305 6.9561 46 1 10.4602 -3.6235 7.6788 47 1 11.0209 -3.8453 10.0894 48 1 9.3798 -3.1304 11.7792 49 1 6.6837 -1.9825 8.8407 50 1 3.9857 -1.5651 0.7344 51 1 3.9799 0.2164 0.9016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699955932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:10 Heat of formation + Delta-G solvation = -34.267871 kcal Electronic energy + Delta-G solvation = -29194.972502 eV Core-core repulsion = 25094.639756 eV Total energy + Delta-G solvation = -4100.332746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.01728 -40.05631 -38.67173 -37.85450 -35.20030 -34.23133 -32.72483 -32.46330 -30.77549 -30.49460 -28.91270 -28.34508 -27.31449 -24.50521 -23.94019 -23.65964 -23.02015 -21.80562 -21.42229 -19.67122 -19.23442 -18.55657 -17.50131 -17.10002 -17.00733 -16.91093 -16.64110 -16.13747 -15.48065 -15.02399 -14.84726 -14.59416 -14.30298 -14.01008 -13.84009 -13.67003 -13.46119 -13.38009 -13.08589 -12.80836 -12.63460 -12.58188 -12.42934 -12.16346 -12.07549 -11.86857 -11.74738 -11.60191 -11.34422 -11.07988 -10.89060 -10.78058 -10.60246 -10.54617 -10.22634 -10.16779 -9.93117 -9.89540 -9.74845 -9.62005 -8.91097 -8.90008 -8.52347 -6.96027 -5.75258 -3.04479 0.65706 0.84409 2.52783 2.68085 3.11991 3.35582 3.44565 3.49419 3.51264 4.02879 4.19249 4.28679 4.42792 4.47529 4.55239 4.58131 4.63704 4.66325 4.74631 4.85052 4.86963 4.98879 5.01851 5.06429 5.11077 5.20130 5.31797 5.47387 5.51253 5.55410 5.64409 5.64453 5.71249 5.86756 5.87620 5.90119 5.92458 6.04715 6.07823 6.15201 6.31819 6.36417 6.38191 6.55911 6.62088 6.80466 6.83777 7.06329 7.49891 7.61444 7.70646 8.22979 8.42672 9.54093 10.10789 10.45126 11.47173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.001571 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.745037 B =17818.418895 C =18934.447955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.125 4.125 16 C 0.100 3.900 17 N -0.620 5.620 18 C 0.524 3.476 19 O -0.536 6.536 20 C -0.132 4.132 21 C -0.105 4.105 22 C 0.057 3.943 23 O -0.306 6.306 24 C 0.084 3.916 25 C -0.111 4.111 26 C -0.131 4.131 27 C 0.055 3.945 28 N -0.451 5.451 29 C 0.014 3.986 30 C 0.119 3.881 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.083 0.917 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.456 0.069 29.278 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.098 0.902 15 C -0.163 4.163 16 C -0.023 4.023 17 N -0.355 5.355 18 C 0.312 3.688 19 O -0.413 6.413 20 C -0.172 4.172 21 C -0.143 4.143 22 C -0.018 4.018 23 O -0.218 6.218 24 C 0.036 3.964 25 C -0.137 4.137 26 C -0.151 4.151 27 C -0.102 4.102 28 N -0.160 5.160 29 C -0.144 4.144 30 C -0.002 4.002 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.175 0.825 49 H 0.175 0.825 50 H 0.101 0.899 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.521 0.167 29.184 29.904 hybrid contribution 0.462 -0.024 -1.474 1.545 sum 6.982 0.143 27.710 28.577 Atomic orbital electron populations 1.22440 0.99096 1.00500 1.00360 1.20161 0.91908 0.95143 0.85389 0.93342 1.42413 1.78163 1.10715 1.05265 1.19201 1.36758 0.93832 0.87316 0.91218 1.24729 1.02088 0.95937 0.98032 1.69657 1.50669 1.08647 1.28900 0.86227 0.77773 0.78591 0.83800 1.21751 1.21828 1.20819 1.22677 0.94166 1.00180 0.95152 0.90167 1.22678 0.97658 1.01046 0.94950 1.22089 0.87053 0.98503 0.94629 1.48677 1.15545 1.62349 1.08901 1.20084 0.80854 0.77420 0.90430 1.90761 1.41980 1.48109 1.60413 1.21487 0.98454 1.03449 0.93788 1.21244 0.96665 1.04118 0.92240 1.22940 0.82644 0.98229 0.97973 1.86112 1.36027 1.78454 1.21163 1.20108 0.95044 0.96691 0.84522 1.21015 0.95055 1.00549 0.97127 1.22049 1.01113 0.99445 0.92502 1.22681 0.89531 0.97636 1.00394 1.67534 1.18613 1.11333 1.18561 1.22960 1.00442 1.02832 0.88125 1.22250 0.94984 1.03136 0.79829 0.92585 0.93656 0.94454 0.78274 0.93511 0.90347 0.90063 0.91653 0.91618 0.88725 0.88688 0.89693 0.89727 0.91538 0.91522 0.83867 0.84011 0.82507 0.82453 0.89851 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.27 37.16 0.34 -2.38 16 2 C 0.18 3.38 2.41 -67.93 -0.16 3.21 16 3 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 4 N -0.72 -17.44 4.80 -53.42 -0.26 -17.69 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 9 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C -0.10 -1.52 2.62 -88.47 -0.23 -1.75 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.32 5.71 -24.90 -0.14 -1.46 16 16 C 0.10 0.95 6.50 -2.98 -0.02 0.93 16 17 N -0.62 -8.41 3.33 -170.39 -0.57 -8.97 16 18 C 0.52 7.35 7.85 -10.98 -0.09 7.26 16 19 O -0.54 -10.09 16.24 5.56 0.09 -10.00 16 20 C -0.13 -1.12 4.90 -27.88 -0.14 -1.26 16 21 C -0.10 -0.96 4.87 -26.73 -0.13 -1.09 16 22 C 0.06 0.41 4.75 37.15 0.18 0.59 16 23 O -0.31 -2.91 10.15 -19.48 -0.20 -3.11 16 24 C 0.08 0.75 6.71 -39.07 -0.26 0.49 16 25 C -0.11 -0.84 10.13 -39.14 -0.40 -1.24 16 26 C -0.13 -0.80 10.11 -39.47 -0.40 -1.20 16 27 C 0.06 0.39 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.23 10.36 -13.12 -0.14 -4.36 16 29 C 0.01 0.12 10.22 -17.37 -0.18 -0.05 16 30 C 0.12 2.01 6.07 -2.53 -0.02 1.99 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 34 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16 43 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16 45 H 0.07 0.38 7.69 -51.93 -0.40 -0.02 16 46 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 49 H 0.16 1.02 6.32 -52.49 -0.33 0.69 16 50 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 51 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 LS Contribution 418.46 15.07 6.31 6.31 Total: -1.00 -34.79 418.46 -9.69 -44.48 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.55 Total: 6.22 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.08 Total: -2.86 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.24 Total: -58.43 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.11 Total: -13.11 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.79 -9.69 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.212 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds