Wall clock time and date at job start Wed Apr 1 2020 04:46:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47188 * 2 1
4 4 N 1.46502 * 109.46987 * 239.99586 * 2 1 3
5 5 C 1.36941 * 119.99779 * 85.00504 * 4 2 1
6 6 H 1.08006 * 120.00013 * 359.97438 * 5 4 2
7 7 C 1.38809 * 119.99784 * 179.97438 * 5 4 2
8 8 N 1.31617 * 119.99964 * 359.97438 * 7 5 4
9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47328 * 89.99915 * 9 7 5
11 11 H 1.48496 * 109.47111 * 210.00371 * 9 7 5
12 12 H 1.48504 * 109.47092 * 330.00045 * 9 7 5
13 13 C 1.53005 * 109.47137 * 119.99911 * 2 1 3
14 14 H 1.08992 * 110.91574 * 57.06826 * 13 2 1
15 15 C 1.55160 * 111.00109 * 293.17005 * 13 2 1
16 16 C 1.54321 * 102.94157 * 206.42501 * 15 13 2
17 17 N 1.47188 * 107.29437 * 22.28370 * 16 15 13
18 18 C 1.34777 * 125.73634 * 181.03089 * 17 16 15
19 19 O 1.21280 * 119.99923 * 179.86277 * 18 17 16
20 20 C 1.50703 * 119.99894 * 359.85989 * 18 17 16
21 21 C 1.53004 * 109.46958 * 180.02562 * 20 18 17
22 22 C 1.52993 * 109.46924 * 180.02562 * 21 20 18
23 23 O 1.42903 * 109.46955 * 179.97438 * 22 21 20
24 24 C 1.35918 * 116.99801 * 179.97438 * 23 22 21
25 25 C 1.39141 * 120.46656 * 180.02562 * 24 23 22
26 26 C 1.38538 * 118.36727 * 180.02562 * 25 24 23
27 27 C 1.38253 * 119.22365 * 0.02562 * 26 25 24
28 28 N 1.31846 * 120.89036 * 359.97438 * 27 26 25
29 29 C 1.31851 * 121.77652 * 359.70550 * 28 27 26
30 30 C 1.47417 * 108.61382 * 0.91119 * 17 16 15
31 31 H 1.08997 * 109.46957 * 65.26742 * 1 2 3
32 32 H 1.08995 * 109.46867 * 185.26509 * 1 2 3
33 33 H 1.09002 * 109.46892 * 305.26975 * 1 2 3
34 34 H 0.96997 * 119.99842 * 264.99432 * 4 2 1
35 35 H 0.97003 * 119.99763 * 179.97438 * 8 7 5
36 36 H 1.08997 * 110.72138 * 324.78735 * 15 13 2
37 37 H 1.09000 * 110.72097 * 88.05797 * 15 13 2
38 38 H 1.08995 * 109.88499 * 141.61016 * 16 15 13
39 39 H 1.08997 * 109.88064 * 262.77723 * 16 15 13
40 40 H 1.08999 * 109.47089 * 300.00454 * 20 18 17
41 41 H 1.09000 * 109.47167 * 60.00707 * 20 18 17
42 42 H 1.09010 * 109.46711 * 300.00126 * 21 20 18
43 43 H 1.08999 * 109.47344 * 59.99613 * 21 20 18
44 44 H 1.08998 * 109.47648 * 299.99761 * 22 21 20
45 45 H 1.09000 * 109.47382 * 60.00033 * 22 21 20
46 46 H 1.07995 * 120.81999 * 359.97438 * 25 24 23
47 47 H 1.08001 * 120.38820 * 180.02562 * 26 25 24
48 48 H 1.08004 * 119.55638 * 179.97438 * 27 26 25
49 49 H 1.07997 * 119.66058 * 180.28803 * 29 28 27
50 50 H 1.09002 * 110.37157 * 217.11188 * 30 17 16
51 51 H 1.09007 * 110.36945 * 94.90267 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1492 -0.0076 -2.3758
6 1 1.8920 1.0403 -2.4244
7 6 2.6123 -0.6619 -3.5090
8 7 2.9262 -1.9387 -3.4495
9 14 2.7902 0.2698 -5.1183
10 1 4.1520 0.8558 -5.2032
11 1 2.5804 -0.6619 -6.2554
12 1 1.7794 1.3562 -5.1756
13 6 2.0400 -0.7213 1.2493
14 1 1.6479 -1.7370 1.2995
15 6 1.6881 0.0749 2.5337
16 6 2.7880 -0.3625 3.5238
17 7 3.9238 -0.8537 2.7269
18 6 5.0775 -1.3456 3.2205
19 8 5.9472 -1.7252 2.4653
20 6 5.2867 -1.4239 4.7109
21 6 6.6679 -2.0145 5.0017
22 6 6.8800 -2.0945 6.5147
23 8 8.1697 -2.6467 6.7863
24 6 8.5185 -2.7864 8.0925
25 6 9.7578 -3.3157 8.4391
26 6 10.0681 -3.4391 9.7837
27 6 9.1437 -3.0362 10.7295
28 7 7.9777 -2.5385 10.3673
29 6 7.6463 -2.3986 9.0988
30 6 3.5884 -0.7207 1.2976
31 1 -0.3633 0.4299 -0.9334
32 1 -0.3633 -1.0233 0.0943
33 1 -0.3633 0.5934 0.8391
34 1 2.2491 -1.6318 -1.1525
35 1 3.2495 -2.3960 -4.2416
36 1 1.7401 1.1478 2.3488
37 1 0.7021 -0.2062 2.9037
38 1 3.1019 0.4881 4.1287
39 1 2.4128 -1.1588 4.1666
40 1 5.2218 -0.4240 5.1399
41 1 4.5191 -2.0593 5.1527
42 1 6.7331 -3.0144 4.5725
43 1 7.4352 -1.3788 4.5599
44 1 6.8146 -1.0949 6.9443
45 1 6.1126 -2.7305 6.9561
46 1 10.4602 -3.6235 7.6788
47 1 11.0209 -3.8453 10.0894
48 1 9.3798 -3.1304 11.7792
49 1 6.6837 -1.9825 8.8407
50 1 3.9857 -1.5651 0.7344
51 1 3.9799 0.2164 0.9016
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699955932.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:10
Heat of formation + Delta-G solvation = -34.267871 kcal
Electronic energy + Delta-G solvation = -29194.972502 eV
Core-core repulsion = 25094.639756 eV
Total energy + Delta-G solvation = -4100.332746 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.01728 -40.05631 -38.67173 -37.85450 -35.20030 -34.23133 -32.72483 -32.46330
-30.77549 -30.49460 -28.91270 -28.34508 -27.31449 -24.50521 -23.94019 -23.65964
-23.02015 -21.80562 -21.42229 -19.67122 -19.23442 -18.55657 -17.50131 -17.10002
-17.00733 -16.91093 -16.64110 -16.13747 -15.48065 -15.02399 -14.84726 -14.59416
-14.30298 -14.01008 -13.84009 -13.67003 -13.46119 -13.38009 -13.08589 -12.80836
-12.63460 -12.58188 -12.42934 -12.16346 -12.07549 -11.86857 -11.74738 -11.60191
-11.34422 -11.07988 -10.89060 -10.78058 -10.60246 -10.54617 -10.22634 -10.16779
-9.93117 -9.89540 -9.74845 -9.62005 -8.91097 -8.90008 -8.52347 -6.96027
-5.75258 -3.04479 0.65706 0.84409 2.52783 2.68085 3.11991 3.35582
3.44565 3.49419 3.51264 4.02879 4.19249 4.28679 4.42792 4.47529
4.55239 4.58131 4.63704 4.66325 4.74631 4.85052 4.86963 4.98879
5.01851 5.06429 5.11077 5.20130 5.31797 5.47387 5.51253 5.55410
5.64409 5.64453 5.71249 5.86756 5.87620 5.90119 5.92458 6.04715
6.07823 6.15201 6.31819 6.36417 6.38191 6.55911 6.62088 6.80466
6.83777 7.06329 7.49891 7.61444 7.70646 8.22979 8.42672 9.54093
10.10789 10.45126 11.47173
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020542 B = 0.001571 C = 0.001478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1362.745037 B =17818.418895 C =18934.447955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.184 3.816
3 H 0.049 0.951
4 N -0.724 5.724
5 C -0.240 4.240
6 H 0.070 0.930
7 C -0.012 4.012
8 N -0.931 5.931
9 Si 0.905 3.095
10 H -0.290 1.290
11 H -0.292 1.292
12 H -0.282 1.282
13 C -0.102 4.102
14 H 0.080 0.920
15 C -0.125 4.125
16 C 0.100 3.900
17 N -0.620 5.620
18 C 0.524 3.476
19 O -0.536 6.536
20 C -0.132 4.132
21 C -0.105 4.105
22 C 0.057 3.943
23 O -0.306 6.306
24 C 0.084 3.916
25 C -0.111 4.111
26 C -0.131 4.131
27 C 0.055 3.945
28 N -0.451 5.451
29 C 0.014 3.986
30 C 0.119 3.881
31 H 0.055 0.945
32 H 0.044 0.956
33 H 0.036 0.964
34 H 0.384 0.616
35 H 0.255 0.745
36 H 0.078 0.922
37 H 0.081 0.919
38 H 0.065 0.935
39 H 0.065 0.935
40 H 0.094 0.906
41 H 0.095 0.905
42 H 0.084 0.916
43 H 0.084 0.916
44 H 0.066 0.934
45 H 0.067 0.933
46 H 0.144 0.856
47 H 0.142 0.858
48 H 0.158 0.842
49 H 0.158 0.842
50 H 0.083 0.917
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.456 0.069 29.278 29.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.074 3.926
3 H 0.067 0.933
4 N -0.366 5.366
5 C -0.371 4.371
6 H 0.088 0.912
7 C -0.208 4.208
8 N -0.579 5.579
9 Si 0.736 3.264
10 H -0.218 1.218
11 H -0.218 1.218
12 H -0.208 1.208
13 C -0.122 4.122
14 H 0.098 0.902
15 C -0.163 4.163
16 C -0.023 4.023
17 N -0.355 5.355
18 C 0.312 3.688
19 O -0.413 6.413
20 C -0.172 4.172
21 C -0.143 4.143
22 C -0.018 4.018
23 O -0.218 6.218
24 C 0.036 3.964
25 C -0.137 4.137
26 C -0.151 4.151
27 C -0.102 4.102
28 N -0.160 5.160
29 C -0.144 4.144
30 C -0.002 4.002
31 H 0.074 0.926
32 H 0.063 0.937
33 H 0.055 0.945
34 H 0.217 0.783
35 H 0.065 0.935
36 H 0.097 0.903
37 H 0.099 0.901
38 H 0.083 0.917
39 H 0.084 0.916
40 H 0.113 0.887
41 H 0.113 0.887
42 H 0.103 0.897
43 H 0.103 0.897
44 H 0.085 0.915
45 H 0.085 0.915
46 H 0.161 0.839
47 H 0.160 0.840
48 H 0.175 0.825
49 H 0.175 0.825
50 H 0.101 0.899
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 6.521 0.167 29.184 29.904
hybrid contribution 0.462 -0.024 -1.474 1.545
sum 6.982 0.143 27.710 28.577
Atomic orbital electron populations
1.22440 0.99096 1.00500 1.00360 1.20161 0.91908 0.95143 0.85389
0.93342 1.42413 1.78163 1.10715 1.05265 1.19201 1.36758 0.93832
0.87316 0.91218 1.24729 1.02088 0.95937 0.98032 1.69657 1.50669
1.08647 1.28900 0.86227 0.77773 0.78591 0.83800 1.21751 1.21828
1.20819 1.22677 0.94166 1.00180 0.95152 0.90167 1.22678 0.97658
1.01046 0.94950 1.22089 0.87053 0.98503 0.94629 1.48677 1.15545
1.62349 1.08901 1.20084 0.80854 0.77420 0.90430 1.90761 1.41980
1.48109 1.60413 1.21487 0.98454 1.03449 0.93788 1.21244 0.96665
1.04118 0.92240 1.22940 0.82644 0.98229 0.97973 1.86112 1.36027
1.78454 1.21163 1.20108 0.95044 0.96691 0.84522 1.21015 0.95055
1.00549 0.97127 1.22049 1.01113 0.99445 0.92502 1.22681 0.89531
0.97636 1.00394 1.67534 1.18613 1.11333 1.18561 1.22960 1.00442
1.02832 0.88125 1.22250 0.94984 1.03136 0.79829 0.92585 0.93656
0.94454 0.78274 0.93511 0.90347 0.90063 0.91653 0.91618 0.88725
0.88688 0.89693 0.89727 0.91538 0.91522 0.83867 0.84011 0.82507
0.82453 0.89851 0.91070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.72 9.27 37.16 0.34 -2.38 16
2 C 0.18 3.38 2.41 -67.93 -0.16 3.21 16
3 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16
4 N -0.72 -17.44 4.80 -53.42 -0.26 -17.69 16
5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16
6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16
7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16
8 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16
9 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16
10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
13 C -0.10 -1.52 2.62 -88.47 -0.23 -1.75 16
14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
15 C -0.12 -1.32 5.71 -24.90 -0.14 -1.46 16
16 C 0.10 0.95 6.50 -2.98 -0.02 0.93 16
17 N -0.62 -8.41 3.33 -170.39 -0.57 -8.97 16
18 C 0.52 7.35 7.85 -10.98 -0.09 7.26 16
19 O -0.54 -10.09 16.24 5.56 0.09 -10.00 16
20 C -0.13 -1.12 4.90 -27.88 -0.14 -1.26 16
21 C -0.10 -0.96 4.87 -26.73 -0.13 -1.09 16
22 C 0.06 0.41 4.75 37.15 0.18 0.59 16
23 O -0.31 -2.91 10.15 -19.48 -0.20 -3.11 16
24 C 0.08 0.75 6.71 -39.07 -0.26 0.49 16
25 C -0.11 -0.84 10.13 -39.14 -0.40 -1.24 16
26 C -0.13 -0.80 10.11 -39.47 -0.40 -1.20 16
27 C 0.06 0.39 11.18 -17.54 -0.20 0.20 16
28 N -0.45 -4.23 10.36 -13.12 -0.14 -4.36 16
29 C 0.01 0.12 10.22 -17.37 -0.18 -0.05 16
30 C 0.12 2.01 6.07 -2.53 -0.02 1.99 16
31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16
34 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16
35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
36 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16
37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.08 0.92 8.10 -51.92 -0.42 0.50 16
43 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16
44 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16
45 H 0.07 0.38 7.69 -51.93 -0.40 -0.02 16
46 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16
47 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16
48 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16
49 H 0.16 1.02 6.32 -52.49 -0.33 0.69 16
50 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16
51 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16
LS Contribution 418.46 15.07 6.31 6.31
Total: -1.00 -34.79 418.46 -9.69 -44.48
By element:
Atomic # 1 Polarization: 14.77 SS G_CDS: -8.55 Total: 6.22 kcal
Atomic # 6 Polarization: -0.78 SS G_CDS: -2.08 Total: -2.86 kcal
Atomic # 7 Polarization: -58.20 SS G_CDS: -0.24 Total: -58.43 kcal
Atomic # 8 Polarization: -13.00 SS G_CDS: -0.11 Total: -13.11 kcal
Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal
Total LS contribution 6.31 Total: 6.31 kcal
Total: -34.79 -9.69 -44.48 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699955932.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.212 kcal
(2) G-P(sol) polarization free energy of solvation -34.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds