Wall clock time and date at job start Wed Apr 1 2020 04:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 N 1.46502 * 109.46987 * 239.99586 * 2 1 3 5 5 C 1.36941 * 119.99779 * 85.00504 * 4 2 1 6 6 H 1.08006 * 120.00013 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99784 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47328 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47111 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47092 * 330.00045 * 9 7 5 13 13 C 1.53005 * 109.47137 * 119.99911 * 2 1 3 14 14 H 1.08992 * 110.91574 * 57.06826 * 13 2 1 15 15 C 1.55160 * 111.00109 * 293.17005 * 13 2 1 16 16 C 1.54321 * 102.94157 * 206.42501 * 15 13 2 17 17 N 1.47188 * 107.29437 * 22.28370 * 16 15 13 18 18 C 1.34777 * 125.73634 * 181.03089 * 17 16 15 19 19 O 1.21280 * 119.99923 * 179.86277 * 18 17 16 20 20 C 1.50703 * 119.99894 * 359.85989 * 18 17 16 21 21 C 1.53004 * 109.46958 * 180.02562 * 20 18 17 22 22 C 1.52993 * 109.46924 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.46955 * 179.97438 * 22 21 20 24 24 C 1.35918 * 116.99801 * 179.97438 * 23 22 21 25 25 C 1.39141 * 120.46656 * 180.02562 * 24 23 22 26 26 C 1.38538 * 118.36727 * 180.02562 * 25 24 23 27 27 C 1.38253 * 119.22365 * 0.02562 * 26 25 24 28 28 N 1.31846 * 120.89036 * 359.97438 * 27 26 25 29 29 C 1.31851 * 121.77652 * 359.70550 * 28 27 26 30 30 C 1.47417 * 108.61382 * 0.91119 * 17 16 15 31 31 H 1.08997 * 109.46957 * 65.26742 * 1 2 3 32 32 H 1.08995 * 109.46867 * 185.26509 * 1 2 3 33 33 H 1.09002 * 109.46892 * 305.26975 * 1 2 3 34 34 H 0.96997 * 119.99842 * 264.99432 * 4 2 1 35 35 H 0.97003 * 119.99763 * 179.97438 * 8 7 5 36 36 H 1.08997 * 110.72138 * 324.78735 * 15 13 2 37 37 H 1.09000 * 110.72097 * 88.05797 * 15 13 2 38 38 H 1.08995 * 109.88499 * 141.61016 * 16 15 13 39 39 H 1.08997 * 109.88064 * 262.77723 * 16 15 13 40 40 H 1.08999 * 109.47089 * 300.00454 * 20 18 17 41 41 H 1.09000 * 109.47167 * 60.00707 * 20 18 17 42 42 H 1.09010 * 109.46711 * 300.00126 * 21 20 18 43 43 H 1.08999 * 109.47344 * 59.99613 * 21 20 18 44 44 H 1.08998 * 109.47648 * 299.99761 * 22 21 20 45 45 H 1.09000 * 109.47382 * 60.00033 * 22 21 20 46 46 H 1.07995 * 120.81999 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.38820 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.55638 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.66058 * 180.28803 * 29 28 27 50 50 H 1.09002 * 110.37157 * 217.11188 * 30 17 16 51 51 H 1.09007 * 110.36945 * 94.90267 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4495 9 14 2.7902 0.2698 -5.1183 10 1 4.1520 0.8558 -5.2032 11 1 2.5804 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6479 -1.7370 1.2995 15 6 1.6881 0.0749 2.5337 16 6 2.7880 -0.3625 3.5238 17 7 3.9238 -0.8537 2.7269 18 6 5.0775 -1.3456 3.2205 19 8 5.9472 -1.7252 2.4653 20 6 5.2867 -1.4239 4.7109 21 6 6.6679 -2.0145 5.0017 22 6 6.8800 -2.0945 6.5147 23 8 8.1697 -2.6467 6.7863 24 6 8.5185 -2.7864 8.0925 25 6 9.7578 -3.3157 8.4391 26 6 10.0681 -3.4391 9.7837 27 6 9.1437 -3.0362 10.7295 28 7 7.9777 -2.5385 10.3673 29 6 7.6463 -2.3986 9.0988 30 6 3.5884 -0.7207 1.2976 31 1 -0.3633 0.4299 -0.9334 32 1 -0.3633 -1.0233 0.0943 33 1 -0.3633 0.5934 0.8391 34 1 2.2491 -1.6318 -1.1525 35 1 3.2495 -2.3960 -4.2416 36 1 1.7401 1.1478 2.3488 37 1 0.7021 -0.2062 2.9037 38 1 3.1019 0.4881 4.1287 39 1 2.4128 -1.1588 4.1666 40 1 5.2218 -0.4240 5.1399 41 1 4.5191 -2.0593 5.1527 42 1 6.7331 -3.0144 4.5725 43 1 7.4352 -1.3788 4.5599 44 1 6.8146 -1.0949 6.9443 45 1 6.1126 -2.7305 6.9561 46 1 10.4602 -3.6235 7.6788 47 1 11.0209 -3.8453 10.0894 48 1 9.3798 -3.1304 11.7792 49 1 6.6837 -1.9825 8.8407 50 1 3.9857 -1.5651 0.7344 51 1 3.9799 0.2164 0.9016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699955932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:09 Heat of formation + Delta-G solvation = -57.740042 kcal Electronic energy + Delta-G solvation = -29195.990332 eV Core-core repulsion = 25094.639756 eV Total energy + Delta-G solvation = -4101.350576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58159 -41.14543 -39.35400 -38.99415 -36.77151 -35.00529 -34.26103 -33.25062 -32.05383 -31.21775 -29.99896 -29.90721 -28.14505 -25.92119 -25.16205 -24.41731 -23.75416 -22.84331 -22.39575 -21.06919 -20.18330 -19.30572 -19.03946 -18.20439 -17.62763 -17.59333 -17.42525 -17.25356 -16.60943 -16.40825 -15.78910 -15.52495 -15.34264 -15.26234 -14.99122 -14.64699 -14.47020 -14.28805 -14.03767 -13.93505 -13.82016 -13.51961 -13.33822 -13.30770 -13.09263 -12.98509 -12.85888 -12.67427 -12.55463 -12.38152 -12.30859 -12.20093 -12.02271 -11.74264 -11.64650 -11.52241 -11.36447 -10.97527 -10.90414 -10.68698 -10.44841 -9.64489 -9.46316 -8.99039 -7.93308 -5.20738 0.14270 0.28571 1.44912 1.46842 1.54709 1.61861 1.82029 2.24146 2.55831 2.82033 3.38052 3.42559 3.55930 3.64508 3.69580 3.77095 3.86200 3.90441 3.91114 4.02657 4.07986 4.17222 4.28364 4.34036 4.35270 4.42332 4.47836 4.53056 4.57089 4.60899 4.64611 4.66411 4.78778 4.89056 4.92888 4.98558 4.99733 5.05465 5.11512 5.14373 5.15059 5.20615 5.28090 5.37975 5.43192 5.53107 5.58793 5.66779 6.24965 6.29015 6.58213 6.96235 7.15787 7.34641 8.13329 8.33746 9.30362 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.001571 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.745037 B =17818.418895 C =18934.447955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.177 3.823 3 H 0.045 0.955 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.968 3.032 10 H -0.292 1.292 11 H -0.298 1.298 12 H -0.266 1.266 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.114 4.114 16 C 0.096 3.904 17 N -0.620 5.620 18 C 0.511 3.489 19 O -0.601 6.601 20 C -0.115 4.115 21 C -0.101 4.101 22 C 0.060 3.940 23 O -0.329 6.329 24 C 0.067 3.933 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.047 3.953 28 N -0.478 5.478 29 C 0.005 3.995 30 C 0.124 3.876 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.150 0.850 47 H 0.173 0.827 48 H 0.182 0.818 49 H 0.175 0.825 50 H 0.032 0.968 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 1.668 33.117 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.798 3.202 10 H -0.220 1.220 11 H -0.225 1.225 12 H -0.190 1.190 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.025 4.025 17 N -0.353 5.353 18 C 0.302 3.698 19 O -0.482 6.482 20 C -0.154 4.154 21 C -0.140 4.140 22 C -0.015 4.015 23 O -0.242 6.242 24 C 0.020 3.980 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.110 4.110 28 N -0.188 5.188 29 C -0.152 4.152 30 C 0.000 4.000 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.168 0.832 47 H 0.191 0.809 48 H 0.199 0.801 49 H 0.192 0.808 50 H 0.050 0.950 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.926 1.828 33.093 33.508 hybrid contribution 0.975 -0.501 -2.587 2.810 sum 5.901 1.328 30.506 31.100 Atomic orbital electron populations 1.22262 0.96878 1.01061 1.00959 1.20460 0.93256 0.94722 0.84709 0.93677 1.42664 1.78478 1.10212 1.06464 1.19623 1.34336 0.94153 0.88339 0.90489 1.25523 1.03341 0.96827 1.01472 1.69827 1.52928 1.10319 1.29218 0.85211 0.77724 0.77551 0.79748 1.22005 1.22478 1.19046 1.22489 0.92237 1.00465 0.96098 0.90661 1.22727 0.99705 1.00693 0.92091 1.22452 0.85001 1.00801 0.94214 1.48802 1.16771 1.62041 1.07721 1.21229 0.79919 0.75977 0.92635 1.90733 1.44180 1.50836 1.62470 1.21499 0.98603 1.06157 0.89177 1.21146 0.96809 1.02179 0.93835 1.22982 0.82463 0.99894 0.96140 1.86072 1.37223 1.79026 1.21840 1.20291 0.95802 0.97664 0.84282 1.21342 0.95070 1.00607 0.98227 1.22380 1.02082 0.98326 0.91567 1.23196 0.89087 0.96824 1.01901 1.67563 1.19845 1.12451 1.18955 1.23204 1.01122 1.02969 0.87890 1.21907 0.96440 0.99662 0.81974 0.94998 0.93831 0.90021 0.79987 0.94349 0.89567 0.86951 0.88257 0.88452 0.85109 0.85260 0.92280 0.92139 0.89329 0.89443 0.83223 0.80948 0.80082 0.80818 0.94975 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.27 71.98 0.67 -4.08 16 2 C 0.18 6.41 2.41 44.99 0.11 6.52 16 3 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 4 N -0.74 -36.78 4.80 -322.92 -1.55 -38.34 16 5 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 8 N -0.97 -61.42 13.06 21.65 0.28 -61.13 16 9 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C -0.09 -2.70 2.62 -9.40 -0.02 -2.72 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.11 -1.93 5.71 31.78 0.18 -1.75 16 16 C 0.10 1.39 6.50 86.70 0.56 1.95 16 17 N -0.62 -16.19 3.33 -811.40 -2.70 -18.90 16 18 C 0.51 14.29 7.85 87.66 0.69 14.98 16 19 O -0.60 -24.28 16.24 -3.03 -0.05 -24.33 16 20 C -0.12 -1.65 4.90 29.85 0.15 -1.51 16 21 C -0.10 -1.83 4.87 30.59 0.15 -1.68 16 22 C 0.06 0.75 4.75 71.98 0.34 1.09 16 23 O -0.33 -6.15 10.15 -92.63 -0.94 -7.09 16 24 C 0.07 1.14 6.71 22.60 0.15 1.29 16 25 C -0.13 -1.81 10.13 22.56 0.23 -1.58 16 26 C -0.12 -1.28 10.11 22.34 0.23 -1.05 16 27 C 0.05 0.58 11.18 84.69 0.95 1.53 16 28 N -0.48 -8.22 10.36 -195.44 -2.02 -10.24 16 29 C 0.01 0.09 10.22 84.80 0.87 0.95 16 30 C 0.12 4.34 6.07 86.86 0.53 4.86 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.84 7.69 -2.39 -0.02 1.82 16 34 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 43 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.09 0.72 7.67 -2.39 -0.02 0.70 16 45 H 0.09 0.73 7.69 -2.39 -0.02 0.72 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 47 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 48 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 49 H 0.17 1.85 6.32 -2.91 -0.02 1.84 16 50 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 51 H 0.05 1.86 8.03 -2.38 -0.02 1.84 16 Total: -1.00 -84.08 418.46 2.30 -81.78 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.19 Total: 26.40 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 7.07 Total: 2.51 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -6.00 Total: -128.61 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.99 Total: -31.42 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -84.08 2.30 -81.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.039 kcal (2) G-P(sol) polarization free energy of solvation -84.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds