Wall clock time and date at job start Wed Apr 1 2020 04:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47356 * 2 1 4 4 C 1.53005 * 109.46840 * 240.00303 * 2 1 3 5 5 C 1.50690 * 109.47189 * 65.00172 * 4 2 1 6 6 O 1.21283 * 120.00389 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00109 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00062 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47303 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.26821 * 304.39146 * 9 8 7 11 11 C 1.55012 * 110.38950 * 182.26176 * 9 8 7 12 12 C 1.55485 * 101.04621 * 205.00629 * 11 9 8 13 13 C 1.53657 * 101.96929 * 33.48733 * 12 11 9 14 14 C 1.52701 * 115.26431 * 206.89726 * 13 12 11 15 15 N 1.47219 * 87.79365 * 219.25468 * 14 13 12 16 16 C 1.36937 * 135.96887 * 206.43839 * 15 14 13 17 17 H 1.07994 * 120.00411 * 6.77260 * 16 15 14 18 18 C 1.38819 * 119.99468 * 186.77646 * 16 15 14 19 19 N 1.31615 * 119.99475 * 172.32103 * 18 16 15 20 20 Si 1.86795 * 120.00070 * 352.32330 * 18 16 15 21 21 H 1.48504 * 109.47044 * 175.35610 * 20 18 16 22 22 H 1.48501 * 109.47100 * 55.35858 * 20 18 16 23 23 H 1.48499 * 109.47390 * 295.35468 * 20 18 16 24 24 C 1.47207 * 88.05480 * 26.69372 * 15 14 13 25 25 O 1.42389 * 108.53058 * 339.13150 * 13 12 11 26 26 N 1.46503 * 109.47062 * 120.00472 * 2 1 3 27 27 C 1.36335 * 125.63717 * 59.69482 * 26 2 1 28 28 C 1.34854 * 108.22144 * 179.83060 * 27 26 2 29 29 C 1.40893 * 107.41194 * 0.41893 * 28 27 26 30 30 C 1.34847 * 107.41778 * 359.73797 * 29 28 27 31 31 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47195 * 299.99408 * 1 2 3 33 33 H 1.08998 * 109.47415 * 59.99660 * 1 2 3 34 34 H 1.09000 * 109.47374 * 304.99495 * 4 2 1 35 35 H 1.09007 * 109.47143 * 185.00235 * 4 2 1 36 36 H 0.97000 * 119.99649 * 0.02562 * 7 5 4 37 37 H 1.09003 * 109.47069 * 60.00457 * 8 7 5 38 38 H 1.08997 * 109.47509 * 300.00509 * 8 7 5 39 39 H 1.09005 * 111.10117 * 322.95036 * 11 9 8 40 40 H 1.09003 * 111.10390 * 87.01516 * 11 9 8 41 41 H 1.09001 * 110.93104 * 275.31651 * 12 11 9 42 42 H 1.09006 * 110.92783 * 151.65883 * 12 11 9 43 43 H 1.09003 * 113.49814 * 104.52364 * 14 13 12 44 44 H 1.08994 * 113.55843 * 333.99030 * 14 13 12 45 45 H 0.96993 * 120.00496 * 4.91101 * 19 18 16 46 46 H 1.09002 * 113.49973 * 88.03752 * 24 15 14 47 47 H 1.09003 * 113.50163 * 218.58128 * 24 15 14 48 48 H 1.08000 * 125.89153 * 359.96012 * 27 26 2 49 49 H 1.07999 * 126.29531 * 180.16052 * 28 27 26 50 50 H 1.07999 * 126.29371 * 179.73503 * 29 28 27 51 51 H 1.08001 * 125.89201 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4765 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7002 8 6 1.5972 0.3651 -4.8932 9 6 2.1072 -0.3560 -6.1425 10 1 3.1843 -0.5099 -6.0764 11 6 1.7572 0.4562 -7.4156 12 6 1.7370 -0.6677 -8.4898 13 6 1.2105 -1.8670 -7.6864 14 6 1.6461 -3.2374 -8.2002 15 7 0.2917 -3.7221 -7.8873 16 6 -0.2732 -4.9280 -7.5680 17 1 0.3546 -5.7896 -7.3952 18 6 -1.6529 -5.0430 -7.4666 19 7 -2.2047 -6.2276 -7.3100 20 14 -2.7261 -3.5166 -7.5526 21 1 -4.1565 -3.9154 -7.5331 22 1 -2.4355 -2.7771 -8.8071 23 1 -2.4398 -2.6437 -6.3858 24 6 -0.1904 -2.3438 -8.0742 25 8 1.4315 -1.6165 -6.3022 26 7 2.0183 -0.6907 1.1961 27 6 1.7559 -1.9868 1.5277 28 6 2.3799 -2.2589 2.6918 29 6 3.0441 -1.0848 3.0986 30 6 2.8055 -0.1419 2.1646 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6053 -1.7198 -1.2953 35 1 3.1263 -0.7995 -1.2057 36 1 2.4890 -1.2152 -3.7908 37 1 2.0311 1.3640 -4.8473 38 1 0.5108 0.4427 -4.9370 39 1 0.7791 0.9285 -7.3232 40 1 2.5282 1.1952 -7.6340 41 1 2.7404 -0.8627 -8.8683 42 1 1.0574 -0.4159 -9.3041 43 1 2.4245 -3.7014 -7.5945 44 1 1.8768 -3.2501 -9.2654 45 1 -1.6455 -7.0116 -7.1940 46 1 -0.4580 -2.1131 -9.1054 47 1 -0.9627 -2.0531 -7.3621 48 1 1.1540 -2.6774 0.9556 49 1 2.3688 -3.2020 3.2180 50 1 3.6357 -0.9625 3.9938 51 1 3.1741 0.8732 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700235013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:43 Heat of formation + Delta-G solvation = 37.259617 kcal Electronic energy + Delta-G solvation = -30663.911411 eV Core-core repulsion = 26566.680329 eV Total energy + Delta-G solvation = -4097.231082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44650 -40.40989 -39.77431 -37.04607 -35.38822 -34.59821 -32.39968 -32.15166 -30.50152 -29.58204 -28.87798 -28.22209 -26.81191 -25.53614 -24.04185 -22.85433 -21.64666 -21.17273 -20.75921 -20.43054 -19.56691 -19.36197 -17.87985 -17.53783 -16.93947 -16.78957 -16.21809 -15.83400 -15.68807 -14.83249 -14.77591 -14.44272 -14.21015 -14.00519 -13.87568 -13.66472 -13.43766 -13.35536 -13.11938 -13.06930 -12.91414 -12.64571 -12.41558 -12.29722 -12.21325 -11.95146 -11.73873 -11.70050 -11.64878 -11.43315 -11.35689 -10.87714 -10.71240 -10.50669 -10.32202 -10.06723 -9.69132 -9.26564 -9.19739 -8.85480 -8.81803 -8.76903 -8.29178 -7.14507 -6.30988 -3.20796 2.13234 2.37162 2.57371 2.93825 3.12040 3.39516 3.45695 3.64146 3.69701 4.18148 4.38337 4.42033 4.55938 4.59965 4.60495 4.72466 4.82287 4.83494 4.88880 4.89588 5.04171 5.09581 5.12590 5.20199 5.28149 5.36734 5.39353 5.44352 5.47838 5.49649 5.59053 5.65483 5.67429 5.81138 5.86601 5.96102 6.00611 6.14362 6.16041 6.17898 6.19483 6.23540 6.27012 6.36830 6.44441 6.86634 7.10450 7.11229 7.24058 7.26636 7.39452 7.97124 8.24036 8.98528 9.51081 10.36623 11.22020 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.002565 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.248730 B =10911.490887 C =12330.822834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.105 0.895 4 C -0.154 4.154 5 C 0.520 3.480 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.123 3.877 9 C 0.062 3.938 10 H 0.076 0.924 11 C -0.146 4.146 12 C -0.137 4.137 13 C 0.069 3.931 14 C 0.117 3.883 15 N -0.621 5.621 16 C -0.300 4.300 17 H 0.082 0.918 18 C -0.026 4.026 19 N -0.936 5.936 20 Si 1.071 2.929 21 H -0.295 1.295 22 H -0.288 1.288 23 H -0.293 1.293 24 C 0.095 3.905 25 O -0.333 6.333 26 N -0.443 5.443 27 C -0.012 4.012 28 C -0.205 4.205 29 C -0.205 4.205 30 C -0.017 4.017 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.260 0.740 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.159 0.841 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.278 17.096 10.640 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.049 3.951 3 H 0.123 0.877 4 C -0.195 4.195 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.370 5.370 8 C 0.000 4.000 9 C 0.004 3.996 10 H 0.094 0.906 11 C -0.184 4.184 12 C -0.176 4.176 13 C 0.028 3.972 14 C -0.010 4.010 15 N -0.349 5.349 16 C -0.426 4.426 17 H 0.100 0.900 18 C -0.224 4.224 19 N -0.578 5.578 20 Si 0.904 3.096 21 H -0.223 1.223 22 H -0.215 1.215 23 H -0.221 1.221 24 C -0.031 4.031 25 O -0.251 6.251 26 N -0.119 5.119 27 C -0.142 4.142 28 C -0.229 4.229 29 C -0.229 4.229 30 C -0.147 4.147 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.176 0.824 49 H 0.151 0.849 50 H 0.150 0.850 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.942 18.124 10.620 23.685 hybrid contribution 1.980 -1.024 -0.238 2.242 sum 12.921 17.100 10.383 23.815 Atomic orbital electron populations 1.22302 0.92674 1.03178 1.04407 1.21072 0.96146 0.96410 0.81515 0.87674 1.22021 1.03850 1.01261 0.92338 1.20235 0.79174 0.85508 0.84468 1.90686 1.39963 1.24753 1.86690 1.45891 1.57581 1.28020 1.05507 1.21567 1.01500 0.94468 0.82514 1.23307 0.96768 0.85273 0.94300 0.90625 1.23220 1.03107 0.98123 0.93938 1.22911 1.02399 0.93881 0.98415 1.23216 0.98301 0.94369 0.81289 1.22629 0.90576 0.90350 0.97400 1.45845 1.03890 1.04068 1.81119 1.20100 0.92163 0.84983 1.45371 0.90015 1.25704 0.93988 1.03107 0.99595 1.70919 1.37075 0.97824 1.52012 0.83686 0.75627 0.74099 0.76188 1.22283 1.21521 1.22090 1.23098 0.94891 0.86463 0.98619 1.88433 1.77555 1.35927 1.23205 1.44363 1.39131 1.10360 1.18060 1.21803 1.06384 0.86273 0.99726 1.20900 1.04599 0.99355 0.98056 1.20879 1.06930 0.93974 1.01152 1.21830 1.01527 0.99708 0.91639 0.92079 0.91934 0.88630 0.87736 0.88076 0.75783 0.90192 0.90437 0.89913 0.89859 0.90215 0.89575 0.93222 0.93393 0.92972 0.92735 0.92565 0.82397 0.84928 0.84997 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.97 37.15 0.33 -1.36 16 2 C 0.15 1.40 2.67 -67.93 -0.18 1.22 16 3 H 0.11 0.96 7.88 -51.93 -0.41 0.56 16 4 C -0.15 -1.35 5.17 -27.89 -0.14 -1.50 16 5 C 0.52 5.81 7.55 -10.99 -0.08 5.73 16 6 O -0.54 -7.51 13.96 5.56 0.08 -7.44 16 7 N -0.72 -7.73 5.54 -60.30 -0.33 -8.06 16 8 C 0.12 1.36 5.39 -4.04 -0.02 1.34 16 9 C 0.06 0.70 3.48 -25.67 -0.09 0.61 16 10 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.15 -1.42 6.58 -24.35 -0.16 -1.58 16 12 C -0.14 -1.60 6.39 -25.07 -0.16 -1.76 16 13 C 0.07 1.17 1.75 -90.44 -0.16 1.01 16 14 C 0.12 2.27 8.20 -8.06 -0.07 2.21 16 15 N -0.62 -15.50 3.70 -184.58 -0.68 -16.18 16 16 C -0.30 -8.81 11.08 -15.06 -0.17 -8.98 16 17 H 0.08 2.52 8.05 -52.49 -0.42 2.10 16 18 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 19 N -0.94 -30.00 13.70 55.49 0.76 -29.24 16 20 Si 1.07 27.46 25.13 -169.99 -4.27 23.19 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.29 -6.76 6.11 56.52 0.35 -6.42 16 23 H -0.29 -7.27 6.64 56.52 0.38 -6.90 16 24 C 0.09 2.01 5.18 -7.92 -0.04 1.97 16 25 O -0.33 -5.54 10.84 -35.23 -0.38 -5.92 16 26 N -0.44 -4.37 2.62 -110.02 -0.29 -4.66 16 27 C -0.01 -0.12 10.45 -16.75 -0.18 -0.30 16 28 C -0.20 -2.15 10.86 -39.78 -0.43 -2.58 16 29 C -0.20 -2.07 10.86 -39.78 -0.43 -2.50 16 30 C -0.02 -0.17 11.39 -16.75 -0.19 -0.36 16 31 H 0.06 0.61 7.91 -51.93 -0.41 0.19 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.11 5.95 -51.93 -0.31 0.81 16 34 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.41 3.93 8.47 -40.82 -0.35 3.59 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.09 0.94 7.81 -51.93 -0.41 0.54 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 45 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 46 H 0.06 1.09 7.50 -51.93 -0.39 0.70 16 47 H 0.06 1.28 4.70 -51.93 -0.24 1.03 16 48 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 50 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -36.03 405.42 -9.78 -45.80 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.50 Total: 4.11 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.26 Total: -7.70 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.54 Total: -58.15 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.30 Total: -13.36 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.27 Total: 23.19 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.03 -9.78 -45.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.064 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds