Wall clock time and date at job start Wed Apr 1 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47356 * 2 1 4 4 C 1.53005 * 109.46840 * 240.00303 * 2 1 3 5 5 C 1.50690 * 109.47189 * 65.00172 * 4 2 1 6 6 O 1.21283 * 120.00389 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00109 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00062 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47303 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.26821 * 304.39146 * 9 8 7 11 11 C 1.55012 * 110.38950 * 182.26176 * 9 8 7 12 12 C 1.55485 * 101.04621 * 205.00629 * 11 9 8 13 13 C 1.53657 * 101.96929 * 33.48733 * 12 11 9 14 14 C 1.52701 * 115.26431 * 206.89726 * 13 12 11 15 15 N 1.47219 * 87.79365 * 219.25468 * 14 13 12 16 16 C 1.36937 * 135.96887 * 206.43839 * 15 14 13 17 17 H 1.07994 * 120.00411 * 6.77260 * 16 15 14 18 18 C 1.38819 * 119.99468 * 186.77646 * 16 15 14 19 19 N 1.31615 * 119.99475 * 172.32103 * 18 16 15 20 20 Si 1.86795 * 120.00070 * 352.32330 * 18 16 15 21 21 H 1.48504 * 109.47044 * 175.35610 * 20 18 16 22 22 H 1.48501 * 109.47100 * 55.35858 * 20 18 16 23 23 H 1.48499 * 109.47390 * 295.35468 * 20 18 16 24 24 C 1.47207 * 88.05480 * 26.69372 * 15 14 13 25 25 O 1.42389 * 108.53058 * 339.13150 * 13 12 11 26 26 N 1.46503 * 109.47062 * 120.00472 * 2 1 3 27 27 C 1.36335 * 125.63717 * 59.69482 * 26 2 1 28 28 C 1.34854 * 108.22144 * 179.83060 * 27 26 2 29 29 C 1.40893 * 107.41194 * 0.41893 * 28 27 26 30 30 C 1.34847 * 107.41778 * 359.73797 * 29 28 27 31 31 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47195 * 299.99408 * 1 2 3 33 33 H 1.08998 * 109.47415 * 59.99660 * 1 2 3 34 34 H 1.09000 * 109.47374 * 304.99495 * 4 2 1 35 35 H 1.09007 * 109.47143 * 185.00235 * 4 2 1 36 36 H 0.97000 * 119.99649 * 0.02562 * 7 5 4 37 37 H 1.09003 * 109.47069 * 60.00457 * 8 7 5 38 38 H 1.08997 * 109.47509 * 300.00509 * 8 7 5 39 39 H 1.09005 * 111.10117 * 322.95036 * 11 9 8 40 40 H 1.09003 * 111.10390 * 87.01516 * 11 9 8 41 41 H 1.09001 * 110.93104 * 275.31651 * 12 11 9 42 42 H 1.09006 * 110.92783 * 151.65883 * 12 11 9 43 43 H 1.09003 * 113.49814 * 104.52364 * 14 13 12 44 44 H 1.08994 * 113.55843 * 333.99030 * 14 13 12 45 45 H 0.96993 * 120.00496 * 4.91101 * 19 18 16 46 46 H 1.09002 * 113.49973 * 88.03752 * 24 15 14 47 47 H 1.09003 * 113.50163 * 218.58128 * 24 15 14 48 48 H 1.08000 * 125.89153 * 359.96012 * 27 26 2 49 49 H 1.07999 * 126.29531 * 180.16052 * 28 27 26 50 50 H 1.07999 * 126.29371 * 179.73503 * 29 28 27 51 51 H 1.08001 * 125.89201 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4765 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7002 8 6 1.5972 0.3651 -4.8932 9 6 2.1072 -0.3560 -6.1425 10 1 3.1843 -0.5099 -6.0764 11 6 1.7572 0.4562 -7.4156 12 6 1.7370 -0.6677 -8.4898 13 6 1.2105 -1.8670 -7.6864 14 6 1.6461 -3.2374 -8.2002 15 7 0.2917 -3.7221 -7.8873 16 6 -0.2732 -4.9280 -7.5680 17 1 0.3546 -5.7896 -7.3952 18 6 -1.6529 -5.0430 -7.4666 19 7 -2.2047 -6.2276 -7.3100 20 14 -2.7261 -3.5166 -7.5526 21 1 -4.1565 -3.9154 -7.5331 22 1 -2.4355 -2.7771 -8.8071 23 1 -2.4398 -2.6437 -6.3858 24 6 -0.1904 -2.3438 -8.0742 25 8 1.4315 -1.6165 -6.3022 26 7 2.0183 -0.6907 1.1961 27 6 1.7559 -1.9868 1.5277 28 6 2.3799 -2.2589 2.6918 29 6 3.0441 -1.0848 3.0986 30 6 2.8055 -0.1419 2.1646 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6053 -1.7198 -1.2953 35 1 3.1263 -0.7995 -1.2057 36 1 2.4890 -1.2152 -3.7908 37 1 2.0311 1.3640 -4.8473 38 1 0.5108 0.4427 -4.9370 39 1 0.7791 0.9285 -7.3232 40 1 2.5282 1.1952 -7.6340 41 1 2.7404 -0.8627 -8.8683 42 1 1.0574 -0.4159 -9.3041 43 1 2.4245 -3.7014 -7.5945 44 1 1.8768 -3.2501 -9.2654 45 1 -1.6455 -7.0116 -7.1940 46 1 -0.4580 -2.1131 -9.1054 47 1 -0.9627 -2.0531 -7.3621 48 1 1.1540 -2.6774 0.9556 49 1 2.3688 -3.2020 3.2180 50 1 3.6357 -0.9625 3.9938 51 1 3.1741 0.8732 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700235013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:42 Heat of formation + Delta-G solvation = 12.223199 kcal Electronic energy + Delta-G solvation = -30664.997072 eV Core-core repulsion = 26566.680329 eV Total energy + Delta-G solvation = -4098.316742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.20222 -41.59514 -40.73971 -38.39940 -36.24138 -35.57517 -34.50510 -33.16799 -31.49464 -30.59232 -29.64555 -29.34625 -28.14431 -27.14282 -25.20223 -23.74266 -22.73954 -22.55241 -21.58434 -21.22377 -20.80994 -20.31956 -19.59538 -18.66327 -17.94930 -17.69763 -17.36952 -17.07097 -16.59618 -16.10948 -15.71400 -15.59316 -15.51935 -15.34571 -15.08311 -14.88197 -14.71438 -14.45576 -14.29492 -13.99764 -13.84052 -13.59568 -13.42105 -13.31796 -13.14170 -12.95762 -12.80751 -12.68022 -12.58826 -12.51509 -12.41010 -12.20549 -12.14149 -11.94604 -11.69946 -11.32377 -11.20062 -11.02739 -10.96905 -10.24715 -10.14691 -9.53639 -9.20962 -9.05011 -8.67994 -5.47482 1.32273 1.37385 1.43420 1.50606 1.62630 1.79612 2.16740 2.31674 2.49181 2.62092 2.98049 3.20526 3.43360 3.46795 3.61265 3.65385 3.73568 3.82138 3.90509 4.09236 4.14410 4.17762 4.39325 4.40118 4.43207 4.46443 4.46564 4.52248 4.57500 4.65057 4.65204 4.71521 4.73971 4.81245 4.83268 4.91085 4.91830 4.95208 5.02900 5.11656 5.13520 5.19957 5.29958 5.38406 5.41725 5.45974 5.92418 6.11367 6.24423 6.35424 6.42453 6.50849 6.68053 7.12021 7.30876 8.26186 8.88146 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.002565 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.248730 B =10911.490887 C =12330.822834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.109 0.891 4 C -0.146 4.146 5 C 0.519 3.481 6 O -0.571 6.571 7 N -0.718 5.718 8 C 0.125 3.875 9 C 0.059 3.941 10 H 0.100 0.900 11 C -0.137 4.137 12 C -0.128 4.128 13 C 0.090 3.910 14 C 0.112 3.888 15 N -0.660 5.660 16 C -0.285 4.285 17 H 0.048 0.952 18 C -0.088 4.088 19 N -0.973 5.973 20 Si 1.112 2.888 21 H -0.304 1.304 22 H -0.253 1.253 23 H -0.287 1.287 24 C 0.082 3.918 25 O -0.367 6.367 26 N -0.444 5.444 27 C -0.025 4.025 28 C -0.221 4.221 29 C -0.220 4.220 30 C -0.022 4.022 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.413 0.587 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.246 0.754 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.166 0.834 49 H 0.140 0.860 50 H 0.145 0.855 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.353 20.451 9.811 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.127 0.873 4 C -0.186 4.186 5 C 0.306 3.694 6 O -0.452 6.452 7 N -0.369 5.369 8 C 0.001 3.999 9 C 0.002 3.998 10 H 0.118 0.882 11 C -0.175 4.175 12 C -0.167 4.167 13 C 0.049 3.951 14 C -0.013 4.013 15 N -0.388 5.388 16 C -0.413 4.413 17 H 0.066 0.934 18 C -0.279 4.279 19 N -0.619 5.619 20 Si 0.939 3.061 21 H -0.233 1.233 22 H -0.177 1.177 23 H -0.214 1.214 24 C -0.043 4.043 25 O -0.286 6.286 26 N -0.120 5.120 27 C -0.155 4.155 28 C -0.246 4.246 29 C -0.245 4.245 30 C -0.151 4.151 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.248 0.752 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.184 0.816 49 H 0.158 0.842 50 H 0.163 0.837 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 13.091 21.511 9.765 27.009 hybrid contribution 1.474 -2.090 0.079 2.559 sum 14.565 19.421 9.844 26.196 Atomic orbital electron populations 1.22219 0.93492 1.02767 1.03602 1.21013 0.95432 0.96641 0.81592 0.87276 1.21965 1.04898 1.00726 0.90997 1.20565 0.78541 0.85203 0.85088 1.90676 1.41257 1.26127 1.87107 1.45943 1.57296 1.28180 1.05488 1.21572 1.00112 0.95529 0.82687 1.23596 0.97502 0.83604 0.95120 0.88225 1.23266 1.04445 0.97973 0.91806 1.22927 1.03761 0.91565 0.98404 1.22860 0.94643 0.95164 0.82479 1.22931 0.87824 0.91772 0.98765 1.45998 1.07037 1.04052 1.81733 1.19978 0.91998 0.86222 1.43070 0.93405 1.26998 0.95925 1.04810 1.00178 1.71018 1.37138 0.98322 1.55444 0.83200 0.73429 0.71537 0.77981 1.23268 1.17741 1.21442 1.23408 0.97313 0.84394 0.99176 1.88405 1.78204 1.38748 1.23242 1.44405 1.39151 1.10237 1.18203 1.22025 1.06724 0.86742 1.00019 1.21170 1.04936 1.00045 0.98426 1.21165 1.07349 0.94014 1.01939 1.22265 1.01012 1.00655 0.91207 0.92291 0.91837 0.90232 0.87536 0.86292 0.75167 0.88155 0.92995 0.90095 0.86071 0.87642 0.88294 0.93852 0.90823 0.94527 0.90852 0.94329 0.81648 0.84243 0.83720 0.80272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.97 71.98 0.65 -2.59 16 2 C 0.16 2.72 2.67 44.99 0.12 2.84 16 3 H 0.11 1.85 7.88 -2.39 -0.02 1.83 16 4 C -0.15 -2.36 5.17 29.85 0.15 -2.21 16 5 C 0.52 10.96 7.55 87.65 0.66 11.62 16 6 O -0.57 -15.36 13.96 -3.04 -0.04 -15.40 16 7 N -0.72 -14.21 5.54 -463.07 -2.56 -16.77 16 8 C 0.12 2.46 5.39 86.38 0.47 2.93 16 9 C 0.06 1.12 3.48 31.28 0.11 1.23 16 10 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 11 C -0.14 -1.97 6.58 32.14 0.21 -1.76 16 12 C -0.13 -2.33 6.39 31.67 0.20 -2.13 16 13 C 0.09 2.76 1.75 -10.67 -0.02 2.74 16 14 C 0.11 4.14 8.20 83.39 0.68 4.83 16 15 N -0.66 -32.63 3.70 -738.94 -2.73 -35.36 16 16 C -0.28 -17.23 11.08 84.04 0.93 -16.29 16 17 H 0.05 3.12 8.05 -2.91 -0.02 3.09 16 18 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 19 N -0.97 -64.97 13.70 21.65 0.30 -64.67 16 20 Si 1.11 56.12 25.13 68.60 1.72 57.84 16 21 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 22 H -0.25 -11.12 6.11 99.48 0.61 -10.51 16 23 H -0.29 -13.98 6.64 99.48 0.66 -13.32 16 24 C 0.08 3.28 5.18 83.48 0.43 3.71 16 25 O -0.37 -11.40 10.84 -148.98 -1.62 -13.02 16 26 N -0.44 -8.23 2.62 -502.01 -1.31 -9.55 16 27 C -0.03 -0.50 10.45 83.22 0.87 0.37 16 28 C -0.22 -4.51 10.86 22.14 0.24 -4.27 16 29 C -0.22 -4.21 10.86 22.14 0.24 -3.97 16 30 C -0.02 -0.39 11.39 83.21 0.95 0.56 16 31 H 0.06 1.17 7.91 -2.38 -0.02 1.15 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.87 5.95 -2.39 -0.01 1.85 16 34 H 0.11 1.72 8.06 -2.39 -0.02 1.70 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.51 16 36 H 0.41 7.24 8.47 -92.71 -0.79 6.46 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.23 8.05 -2.38 -0.02 1.22 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.45 8.13 -2.39 -0.02 1.44 16 42 H 0.10 1.62 7.81 -2.38 -0.02 1.60 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 45 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 46 H 0.07 2.67 7.50 -2.39 -0.02 2.65 16 47 H 0.04 1.69 4.70 -2.39 -0.01 1.68 16 48 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 49 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 50 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 51 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -82.28 405.42 1.06 -81.22 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.05 Total: 23.10 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 7.36 Total: -7.39 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -6.32 Total: -126.35 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.66 Total: -28.42 kcal Atomic # 14 Polarization: 56.12 SS G_CDS: 1.72 Total: 57.84 kcal Total: -82.28 1.06 -81.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.443 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds