Wall clock time and date at job start Wed Apr 1 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47326 * 2 1 4 4 C 1.53001 * 109.47238 * 119.99635 * 2 1 3 5 5 C 1.50689 * 109.47361 * 295.00346 * 4 2 1 6 6 O 1.21287 * 120.00198 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00096 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00073 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46978 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.26633 * 304.38107 * 9 8 7 11 11 C 1.55013 * 110.38167 * 182.25519 * 9 8 7 12 12 C 1.55482 * 101.04633 * 204.99825 * 11 9 8 13 13 C 1.53666 * 101.96795 * 33.48818 * 12 11 9 14 14 C 1.52694 * 115.26892 * 206.90015 * 13 12 11 15 15 N 1.47212 * 87.79750 * 219.25119 * 14 13 12 16 16 C 1.36929 * 135.97518 * 206.45765 * 15 14 13 17 17 H 1.08004 * 119.99690 * 7.81059 * 16 15 14 18 18 C 1.38806 * 120.00254 * 187.80786 * 16 15 14 19 19 N 1.31623 * 120.00448 * 195.31964 * 18 16 15 20 20 Si 1.86798 * 120.00073 * 15.31965 * 18 16 15 21 21 H 1.48504 * 109.47294 * 270.00540 * 20 18 16 22 22 H 1.48492 * 109.47337 * 150.00011 * 20 18 16 23 23 H 1.48506 * 109.47040 * 29.99991 * 20 18 16 24 24 C 1.47216 * 88.05142 * 26.71314 * 15 14 13 25 25 O 1.42393 * 108.52854 * 339.13460 * 13 12 11 26 26 N 1.46504 * 109.46905 * 239.99993 * 2 1 3 27 27 C 1.36342 * 125.63558 * 299.68798 * 26 2 1 28 28 C 1.34850 * 108.21495 * 179.83447 * 27 26 2 29 29 C 1.40890 * 107.41726 * 0.42662 * 28 27 26 30 30 C 1.34851 * 107.41897 * 359.73619 * 29 28 27 31 31 H 1.09004 * 109.47455 * 299.99764 * 1 2 3 32 32 H 1.08999 * 109.47126 * 60.00038 * 1 2 3 33 33 H 1.09007 * 109.47390 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46973 * 174.99749 * 4 2 1 35 35 H 1.09005 * 109.46532 * 55.00183 * 4 2 1 36 36 H 0.97004 * 119.99924 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47246 * 59.99657 * 8 7 5 38 38 H 1.09001 * 109.46500 * 299.99841 * 8 7 5 39 39 H 1.08996 * 111.10774 * 322.95020 * 11 9 8 40 40 H 1.09004 * 111.10206 * 87.01484 * 11 9 8 41 41 H 1.08993 * 110.93454 * 275.32536 * 12 11 9 42 42 H 1.09004 * 110.93292 * 151.65443 * 12 11 9 43 43 H 1.09002 * 113.49387 * 104.51958 * 14 13 12 44 44 H 1.09000 * 113.56007 * 333.99672 * 14 13 12 45 45 H 0.97000 * 119.99832 * 354.91549 * 19 18 16 46 46 H 1.08997 * 113.49599 * 88.02095 * 24 15 14 47 47 H 1.09000 * 113.49758 * 218.55452 * 24 15 14 48 48 H 1.07996 * 125.89011 * 359.96602 * 27 26 2 49 49 H 1.07999 * 126.28865 * 180.16680 * 28 27 26 50 50 H 1.08004 * 126.29032 * 179.73656 * 29 28 27 51 51 H 1.07996 * 125.88794 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 8 1.0116 1.0874 2.3632 7 7 1.9845 -0.3919 3.7002 8 6 1.5964 0.3644 4.8934 9 6 2.1066 -0.3567 6.1426 10 1 1.7419 -1.3837 6.1610 11 6 1.6586 0.3962 7.4214 12 6 2.7533 -0.0526 8.4302 13 6 3.9867 -0.1863 7.5234 14 6 5.0418 -1.1816 8.0007 15 7 6.0660 -0.2259 7.5481 16 6 7.3641 -0.3037 7.1192 17 1 7.8167 -1.2677 6.9398 18 6 8.0982 0.8565 6.9148 19 7 9.2200 0.8132 6.2277 20 14 7.4941 2.4796 7.6149 21 1 6.6206 3.1531 6.6206 22 1 8.6574 3.3499 7.9219 23 1 6.7237 2.2259 8.8590 24 6 5.0856 0.8506 7.7650 25 8 3.5450 -0.3370 6.1781 26 7 2.0183 -0.6906 -1.1962 27 6 1.7656 -1.9902 -1.5219 28 6 2.3799 -2.2587 -2.6920 29 6 3.0440 -1.0846 -3.0987 30 6 2.8054 -0.1416 -2.1646 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1262 -0.7994 1.2056 35 1 1.6053 -1.7198 1.2952 36 1 2.4884 -1.2158 3.7908 37 1 0.5100 0.4426 4.9366 38 1 2.0310 1.3630 4.8477 39 1 1.6827 1.4754 7.2702 40 1 0.6698 0.0694 7.7431 41 1 2.4970 -1.0105 8.8824 42 1 2.9130 0.7073 9.1952 43 1 5.0420 -2.1166 7.4406 44 1 5.0382 -1.3363 9.0797 45 1 9.5721 -0.0393 5.9273 46 1 5.0932 1.2473 8.7802 47 1 5.1229 1.6318 7.0058 48 1 1.1736 -2.6842 -0.9437 49 1 2.3687 -3.2017 -3.2182 50 1 3.6355 -0.9622 -3.9940 51 1 3.1745 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700235014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:46 Heat of formation + Delta-G solvation = 35.488824 kcal Electronic energy + Delta-G solvation = -30574.116893 eV Core-core repulsion = 26476.809024 eV Total energy + Delta-G solvation = -4097.307869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.43071 -40.38397 -39.75468 -37.01981 -35.38554 -34.58272 -32.38662 -32.13525 -30.48554 -29.57991 -28.86118 -28.23902 -26.80571 -25.45046 -24.03539 -22.85287 -21.63137 -21.15328 -20.74640 -20.41130 -19.56245 -19.34989 -17.87127 -17.51372 -16.91428 -16.79674 -16.08760 -15.81642 -15.67266 -14.85428 -14.69883 -14.50815 -14.18644 -13.96686 -13.80686 -13.66127 -13.42365 -13.36300 -13.13435 -13.09098 -12.98209 -12.64800 -12.40056 -12.25385 -12.19928 -12.00650 -11.72255 -11.68032 -11.67500 -11.43017 -11.34753 -10.85976 -10.74937 -10.36445 -10.22777 -10.05136 -9.87299 -9.25744 -9.24201 -8.87634 -8.75041 -8.70134 -8.27198 -7.17146 -6.28684 -3.19508 2.14753 2.39656 2.58182 2.96013 3.13529 3.41540 3.46271 3.61864 3.71623 4.17170 4.40128 4.45071 4.55987 4.61007 4.61946 4.74272 4.82241 4.85576 4.90526 4.91210 5.05879 5.08691 5.10277 5.20034 5.28723 5.38394 5.39709 5.44518 5.47067 5.49208 5.56942 5.65085 5.65780 5.82642 5.86348 5.89209 6.00982 6.14972 6.17621 6.20996 6.22170 6.24050 6.31107 6.40014 6.48498 6.88414 7.12946 7.13355 7.25678 7.28155 7.42458 7.98565 8.25410 8.99267 9.52920 10.38591 11.21629 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.002531 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.332442 B =11059.766039 C =12681.735609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.107 0.893 4 C -0.154 4.154 5 C 0.521 3.479 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.123 3.877 9 C 0.062 3.938 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.137 4.137 13 C 0.071 3.929 14 C 0.113 3.887 15 N -0.617 5.617 16 C -0.301 4.301 17 H 0.081 0.919 18 C -0.024 4.024 19 N -0.932 5.932 20 Si 1.062 2.938 21 H -0.293 1.293 22 H -0.295 1.295 23 H -0.283 1.283 24 C 0.098 3.902 25 O -0.332 6.332 26 N -0.443 5.443 27 C -0.016 4.016 28 C -0.204 4.204 29 C -0.205 4.205 30 C -0.013 4.013 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.261 0.739 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.156 0.844 49 H 0.132 0.868 50 H 0.133 0.867 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 -4.769 -7.413 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.125 0.875 4 C -0.194 4.194 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.370 5.370 8 C 0.000 4.000 9 C 0.004 3.996 10 H 0.093 0.907 11 C -0.184 4.184 12 C -0.176 4.176 13 C 0.030 3.970 14 C -0.014 4.014 15 N -0.344 5.344 16 C -0.428 4.428 17 H 0.099 0.901 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.894 3.106 21 H -0.221 1.221 22 H -0.222 1.222 23 H -0.210 1.210 24 C -0.028 4.028 25 O -0.250 6.250 26 N -0.119 5.119 27 C -0.146 4.146 28 C -0.228 4.228 29 C -0.229 4.229 30 C -0.143 4.143 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.174 0.826 49 H 0.150 0.850 50 H 0.151 0.849 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.118 -2.269 -7.381 23.427 hybrid contribution 0.063 -2.157 0.268 2.175 sum -22.055 -4.426 -7.113 23.592 Atomic orbital electron populations 1.22279 0.92863 1.02721 1.04391 1.21084 0.95913 0.96765 0.81558 0.87505 1.22015 1.04392 1.00709 0.92332 1.20234 0.79165 0.85523 0.84448 1.90686 1.40406 1.24390 1.86640 1.45891 1.57380 1.28143 1.05556 1.21567 0.99611 0.96236 0.82615 1.23300 0.83292 0.98780 0.94273 0.90680 1.23217 0.99441 1.01445 0.94269 1.22907 0.93930 1.02490 0.98273 1.23180 0.92571 0.99560 0.81720 1.22660 0.87136 0.94763 0.96835 1.46051 1.10430 1.02342 1.75613 1.20086 0.85498 0.95681 1.41499 0.90144 1.25744 0.96095 1.01530 0.98909 1.70898 1.22849 1.27590 1.36133 0.83777 0.74715 0.75791 0.76339 1.22115 1.22244 1.20950 1.23031 0.87195 0.93695 0.98922 1.88444 1.17833 1.93441 1.25303 1.44346 1.39341 1.10120 1.18088 1.21705 1.07033 0.86172 0.99664 1.20882 1.04742 0.99311 0.97899 1.20891 1.06768 0.93973 1.01295 1.21889 1.00971 0.99914 0.91505 0.88721 0.91942 0.92392 0.87686 0.88127 0.75782 0.90218 0.90438 0.89911 0.89899 0.90259 0.89619 0.93221 0.93663 0.92884 0.92740 0.92491 0.82635 0.84997 0.84918 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 8.98 37.16 0.33 -1.11 16 2 C 0.15 1.41 2.67 -67.93 -0.18 1.23 16 3 H 0.11 1.10 7.87 -51.93 -0.41 0.69 16 4 C -0.15 -1.38 5.16 -27.89 -0.14 -1.52 16 5 C 0.52 5.88 7.55 -10.99 -0.08 5.80 16 6 O -0.54 -7.58 13.97 5.55 0.08 -7.50 16 7 N -0.72 -7.81 5.54 -60.29 -0.33 -8.14 16 8 C 0.12 1.37 5.39 -4.04 -0.02 1.35 16 9 C 0.06 0.70 3.48 -25.67 -0.09 0.61 16 10 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.15 -1.42 6.58 -24.35 -0.16 -1.58 16 12 C -0.14 -1.61 6.39 -25.07 -0.16 -1.77 16 13 C 0.07 1.20 1.75 -90.43 -0.16 1.04 16 14 C 0.11 2.20 8.20 -8.07 -0.07 2.13 16 15 N -0.62 -15.43 3.63 -184.60 -0.67 -16.10 16 16 C -0.30 -8.87 11.03 -15.07 -0.17 -9.03 16 17 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 19 N -0.93 -29.97 13.70 55.49 0.76 -29.21 16 20 Si 1.06 27.10 25.51 -169.99 -4.34 22.76 16 21 H -0.29 -7.29 6.97 56.52 0.39 -6.90 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.28 -6.58 5.65 56.52 0.32 -6.26 16 24 C 0.10 2.06 5.09 -7.91 -0.04 2.02 16 25 O -0.33 -5.57 10.84 -35.23 -0.38 -5.96 16 26 N -0.44 -4.48 2.62 -110.03 -0.29 -4.77 16 27 C -0.02 -0.16 10.45 -16.75 -0.18 -0.33 16 28 C -0.20 -2.13 10.86 -39.78 -0.43 -2.56 16 29 C -0.20 -2.20 10.86 -39.78 -0.43 -2.63 16 30 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 31 H 0.09 0.95 5.95 -51.93 -0.31 0.64 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.41 4.00 8.47 -40.82 -0.35 3.65 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.09 0.94 7.81 -51.93 -0.41 0.54 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 45 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 46 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 47 H 0.06 1.30 6.28 -51.93 -0.33 0.97 16 48 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 50 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 51 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -36.17 406.34 -9.87 -46.04 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.56 Total: 4.26 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.26 Total: -7.50 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.53 Total: -58.22 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.30 Total: -13.46 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -4.34 Total: 22.76 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.17 -9.87 -46.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.531 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds